Wall clock time and date at job start Tue Mar 31 2020 20:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46887 * 2 1 4 4 H 1.08997 * 109.30161 * 304.58005 * 3 2 1 5 5 C 1.52926 * 109.29685 * 184.99780 * 3 2 1 6 6 C 1.53345 * 108.67018 * 189.14385 * 5 3 2 7 7 H 1.09003 * 109.67345 * 307.75858 * 6 5 3 8 8 C 1.50707 * 109.67121 * 187.26450 * 6 5 3 9 9 O 1.21279 * 119.99629 * 0.49914 * 8 6 5 10 10 N 1.34778 * 119.99745 * 180.49445 * 8 6 5 11 11 C 1.46504 * 119.99601 * 184.73295 * 10 8 6 12 12 C 1.52998 * 109.47092 * 184.87936 * 11 10 8 13 13 C 1.52996 * 109.47328 * 183.71726 * 12 11 10 14 14 C 1.52998 * 115.55000 * 294.70177 * 13 12 11 15 15 N 1.46503 * 109.47297 * 302.56175 * 14 13 12 16 16 C 1.36935 * 120.00083 * 174.76186 * 15 14 13 17 17 H 1.08005 * 120.00002 * 4.75994 * 16 15 14 18 18 C 1.38810 * 119.99762 * 184.48547 * 16 15 14 19 19 N 1.31625 * 119.99724 * 174.35021 * 18 16 15 20 20 Si 1.86801 * 120.00181 * 354.35032 * 18 16 15 21 21 H 1.48495 * 109.46956 * 94.01766 * 20 18 16 22 22 H 1.48503 * 109.46822 * 214.01521 * 20 18 16 23 23 H 1.48498 * 109.46860 * 334.01471 * 20 18 16 24 24 C 1.53005 * 117.49939 * 80.36953 * 13 12 11 25 25 C 1.52999 * 117.50000 * 149.03220 * 13 12 11 26 26 C 1.53072 * 108.46002 * 67.51487 * 6 5 3 27 27 C 1.50192 * 109.88254 * 311.16646 * 26 6 5 28 28 O 1.21279 * 118.22989 * 197.51051 * 27 26 6 29 29 N 1.33355 * 123.52160 * 17.47702 * 27 26 6 30 30 H 1.09005 * 109.47093 * 60.00076 * 1 2 3 31 31 H 1.09000 * 109.47612 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47374 * 300.00438 * 1 2 3 33 33 H 1.08993 * 109.47213 * 240.00168 * 2 1 3 34 34 H 1.08999 * 109.46704 * 119.99790 * 2 1 3 35 35 H 1.08993 * 109.60200 * 69.38612 * 5 3 2 36 36 H 1.08996 * 109.60207 * 308.89350 * 5 3 2 37 37 H 0.96993 * 119.99968 * 4.73471 * 10 8 6 38 38 H 1.09000 * 109.46714 * 64.88457 * 11 10 8 39 39 H 1.08999 * 109.47395 * 304.88405 * 11 10 8 40 40 H 1.09008 * 109.46871 * 63.71995 * 12 11 10 41 41 H 1.08998 * 109.47129 * 303.72117 * 12 11 10 42 42 H 1.09000 * 109.47167 * 182.56257 * 14 13 12 43 43 H 1.09002 * 109.47257 * 62.56187 * 14 13 12 44 44 H 0.96993 * 119.99594 * 354.76028 * 15 14 13 45 45 H 0.96995 * 119.99614 * 180.02562 * 19 18 16 46 46 H 1.08995 * 117.49859 * 215.00723 * 24 13 12 47 47 H 1.09001 * 117.49580 * 0.02690 * 24 13 12 48 48 H 1.08998 * 117.49724 * 359.97279 * 25 13 12 49 49 H 1.08994 * 117.50239 * 144.97962 * 25 13 12 50 50 H 1.08993 * 109.39688 * 71.24228 * 26 6 5 51 51 H 1.09000 * 109.39946 * 190.98566 * 26 6 5 52 52 H 0.97000 * 117.94251 * 177.83011 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6096 1.9768 -0.8470 5 6 3.5640 1.4398 -0.1257 6 6 4.0782 2.8659 0.1052 7 1 3.5460 3.5580 -0.5474 8 6 5.5553 2.9263 -0.1879 9 8 6.1417 1.9303 -0.5555 10 7 6.2244 4.0870 -0.0415 11 6 7.6358 4.1722 -0.4249 12 6 8.1845 5.5496 -0.0475 13 6 9.6310 5.6723 -0.5307 14 6 10.6328 4.7299 0.1396 15 7 10.6119 4.9453 1.5885 16 6 11.3508 4.1380 2.4115 17 1 12.0082 3.3927 1.9887 18 6 11.2592 4.2815 3.7892 19 7 11.8820 3.4350 4.5818 20 14 10.2523 5.6757 4.5182 21 1 8.8790 5.1933 4.8122 22 1 10.8918 6.1441 5.7740 23 1 10.1857 6.7980 3.5481 24 6 9.8569 6.0102 -2.0057 25 6 10.1274 7.0637 -0.9286 26 6 3.8274 3.2406 1.5680 27 6 2.4093 2.9170 1.9422 28 8 1.9468 3.4326 2.9378 29 7 1.6314 2.0937 1.2384 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 3.8480 1.1057 -1.1236 36 1 3.9914 0.7715 0.6218 37 1 5.7715 4.8659 0.3176 38 1 7.7295 4.0261 -1.5010 39 1 8.2013 3.4003 0.0971 40 1 8.1518 5.6696 1.0354 41 1 7.5777 6.3236 -0.5173 42 1 11.6333 4.9312 -0.2432 43 1 10.3615 3.6968 -0.0781 44 1 10.0746 5.6599 1.9648 45 1 11.8177 3.5350 5.5444 46 1 10.7192 5.5611 -2.4986 47 1 8.9750 6.1455 -2.6318 48 1 9.4232 7.8917 -0.8466 49 1 11.1674 7.3079 -0.7126 50 1 4.5074 2.6780 2.2075 51 1 4.0041 4.3076 1.7038 52 1 0.7378 1.9169 1.5716 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166341465.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:49 Heat of formation + Delta-G solvation = -56.767323 kcal Electronic energy + Delta-G solvation = -29651.526558 eV Core-core repulsion = 25651.132824 eV Total energy + Delta-G solvation = -4000.393734 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.08066 -39.58093 -38.42989 -37.36123 -34.93915 -34.31341 -34.06960 -32.43793 -31.13568 -30.21144 -29.30573 -26.42207 -25.91631 -24.17121 -22.85888 -22.36733 -22.14315 -21.80030 -20.52247 -19.63851 -18.80714 -17.77735 -17.51126 -17.04092 -16.67600 -16.07458 -15.68589 -15.45783 -15.16323 -14.89436 -14.60736 -14.40629 -14.21646 -14.04703 -13.92284 -13.82614 -13.41835 -13.22363 -13.06146 -12.76431 -12.40825 -12.35738 -12.05041 -11.87834 -11.74692 -11.62522 -11.48754 -11.42081 -11.34900 -11.24346 -11.20796 -10.93577 -10.76667 -10.43620 -10.17061 -9.91988 -9.73782 -9.64209 -9.45654 -9.44841 -9.06748 -8.84212 -7.20036 -5.75453 -3.10071 2.33341 2.49962 2.90205 3.00697 3.37689 3.39445 3.46014 3.91045 4.02983 4.14234 4.21450 4.33366 4.57422 4.59393 4.60271 4.67611 4.84062 4.85291 4.91039 4.96800 5.02679 5.07124 5.15008 5.17463 5.30267 5.36459 5.40998 5.49222 5.50973 5.53517 5.59428 5.63368 5.64448 5.71192 5.76232 5.82826 5.83664 6.04428 6.12468 6.28653 6.29091 6.33043 6.40103 6.42948 6.67292 6.70915 6.98213 7.39311 7.88957 8.02353 8.11756 8.44064 9.23592 9.95808 10.16698 11.43009 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011271 B = 0.002722 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.588221 B =10285.566371 C =11524.772721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.137 4.137 3 C 0.139 3.861 4 H 0.078 0.922 5 C -0.113 4.113 6 C -0.110 4.110 7 H 0.105 0.895 8 C 0.517 3.483 9 O -0.531 6.531 10 N -0.727 5.727 11 C 0.121 3.879 12 C -0.089 4.089 13 C -0.126 4.126 14 C 0.192 3.808 15 N -0.751 5.751 16 C -0.242 4.242 17 H 0.089 0.911 18 C 0.005 3.995 19 N -0.933 5.933 20 Si 0.881 3.119 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.276 1.276 24 C -0.172 4.172 25 C -0.170 4.170 26 C -0.130 4.130 27 C 0.525 3.475 28 O -0.554 6.554 29 N -0.716 5.716 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.398 0.602 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.024 0.976 43 H 0.037 0.963 44 H 0.361 0.639 45 H 0.259 0.741 46 H 0.094 0.906 47 H 0.090 0.910 48 H 0.088 0.912 49 H 0.096 0.904 50 H 0.110 0.890 51 H 0.107 0.893 52 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.669 -0.118 -15.872 27.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.175 4.175 3 C 0.034 3.966 4 H 0.096 0.904 5 C -0.151 4.151 6 C -0.132 4.132 7 H 0.123 0.877 8 C 0.302 3.698 9 O -0.407 6.407 10 N -0.378 5.378 11 C -0.001 4.001 12 C -0.127 4.127 13 C -0.127 4.127 14 C 0.065 3.935 15 N -0.396 5.396 16 C -0.372 4.372 17 H 0.107 0.893 18 C -0.191 4.191 19 N -0.581 5.581 20 Si 0.711 3.289 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.202 1.202 24 C -0.210 4.210 25 C -0.207 4.207 26 C -0.170 4.170 27 C 0.312 3.688 28 O -0.432 6.432 29 N -0.370 5.370 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.232 0.768 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.042 0.958 43 H 0.055 0.945 44 H 0.194 0.806 45 H 0.069 0.931 46 H 0.113 0.887 47 H 0.108 0.892 48 H 0.107 0.893 49 H 0.115 0.885 50 H 0.128 0.872 51 H 0.125 0.875 52 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -22.074 -0.718 -15.646 27.066 hybrid contribution -1.103 1.326 0.939 1.964 sum -23.177 0.608 -14.707 27.456 Atomic orbital electron populations 1.21812 0.95365 1.02345 1.01837 1.21930 0.96428 0.95365 1.03806 1.21097 0.95282 0.93707 0.86468 0.90383 1.21797 0.92733 0.95283 1.05302 1.21464 0.94114 1.00038 0.97590 0.87711 1.20297 0.88620 0.83188 0.77662 1.90741 1.69513 1.34294 1.46150 1.46044 1.12793 1.13088 1.65874 1.21402 0.79924 0.98630 1.00189 1.21213 0.93536 0.95676 1.02234 1.21640 0.95633 0.98585 0.96827 1.20165 0.93871 0.95200 0.84309 1.42636 1.57040 1.38603 1.01356 1.19042 1.18342 1.12099 0.87740 0.89297 1.24658 0.99983 0.98578 0.95863 1.69718 1.47808 1.37393 1.03149 0.86571 0.80346 0.83193 0.78792 1.21109 1.21753 1.20238 1.22975 1.03075 1.03732 0.91189 1.23010 1.02382 0.92065 1.03212 1.21698 0.94323 1.05035 0.95975 1.19989 0.88014 0.78034 0.82753 1.90792 1.73933 1.51756 1.26738 1.45718 1.18095 1.47342 1.25803 0.92313 0.92067 0.92798 0.89959 0.90869 0.88514 0.89825 0.76790 0.91700 0.89823 0.90414 0.91921 0.95804 0.94538 0.80635 0.93101 0.88718 0.89157 0.89318 0.88526 0.87177 0.87459 0.76471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 9.75 37.16 0.36 -0.28 16 2 C -0.14 -0.66 5.57 -26.73 -0.15 -0.81 16 3 C 0.14 0.79 3.09 -68.37 -0.21 0.58 16 4 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 5 C -0.11 -0.85 3.99 -26.59 -0.11 -0.95 16 6 C -0.11 -0.89 2.61 -91.55 -0.24 -1.13 16 7 H 0.10 0.62 8.13 -51.93 -0.42 0.19 16 8 C 0.52 6.06 7.13 -10.98 -0.08 5.98 16 9 O -0.53 -8.41 15.88 5.56 0.09 -8.32 16 10 N -0.73 -7.92 5.48 -60.29 -0.33 -8.25 16 11 C 0.12 1.61 5.47 -4.04 -0.02 1.58 16 12 C -0.09 -1.14 5.06 -26.73 -0.14 -1.28 16 13 C -0.13 -1.81 1.63 -154.51 -0.25 -2.06 16 14 C 0.19 3.64 5.84 -4.04 -0.02 3.62 16 15 N -0.75 -17.53 5.18 -59.91 -0.31 -17.84 16 16 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 17 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 18 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 19 N -0.93 -29.60 13.97 55.49 0.78 -28.82 16 20 Si 0.88 22.14 27.77 -169.99 -4.72 17.42 16 21 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 23 H -0.28 -6.49 6.49 56.52 0.37 -6.12 16 24 C -0.17 -2.02 9.97 -26.69 -0.27 -2.28 16 25 C -0.17 -2.19 9.92 -26.69 -0.26 -2.45 16 26 C -0.13 -1.19 5.17 -28.09 -0.15 -1.33 16 27 C 0.53 5.56 7.71 -11.86 -0.09 5.47 16 28 O -0.55 -8.28 17.78 5.56 0.10 -8.18 16 29 N -0.72 -5.44 5.12 -54.85 -0.28 -5.72 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.05 0.23 6.62 -51.93 -0.34 -0.12 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.10 0.72 7.89 -51.93 -0.41 0.31 16 36 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 37 H 0.40 3.27 8.07 -40.82 -0.33 2.94 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 1.41 7.31 -51.93 -0.38 1.03 16 40 H 0.08 1.15 7.21 -51.92 -0.37 0.77 16 41 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 42 H 0.02 0.47 8.11 -51.93 -0.42 0.05 16 43 H 0.04 0.72 7.39 -51.93 -0.38 0.34 16 44 H 0.36 8.22 4.70 -40.82 -0.19 8.02 16 45 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 46 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 48 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 50 H 0.11 1.14 8.09 -51.93 -0.42 0.71 16 51 H 0.11 0.86 7.85 -51.93 -0.41 0.45 16 52 H 0.40 2.79 6.97 -40.82 -0.28 2.51 16 LS Contribution 413.09 15.07 6.23 6.23 Total: -1.00 -36.28 413.09 -9.36 -45.64 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -9.03 Total: 10.18 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -1.87 Total: -2.32 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -0.15 Total: -60.64 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: 0.19 Total: -16.50 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.72 Total: 17.42 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -36.28 -9.36 -45.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166341465.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.125 kcal (2) G-P(sol) polarization free energy of solvation -36.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds