Wall clock time and date at job start Tue Mar 31 2020 20:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46887 * 2 1 4 4 H 1.08997 * 109.30161 * 304.58005 * 3 2 1 5 5 C 1.52926 * 109.29685 * 184.99780 * 3 2 1 6 6 C 1.53345 * 108.67018 * 189.14385 * 5 3 2 7 7 H 1.09003 * 109.67345 * 307.75858 * 6 5 3 8 8 C 1.50707 * 109.67121 * 187.26450 * 6 5 3 9 9 O 1.21279 * 119.99629 * 0.49914 * 8 6 5 10 10 N 1.34778 * 119.99745 * 180.49445 * 8 6 5 11 11 C 1.46504 * 119.99601 * 184.73295 * 10 8 6 12 12 C 1.52998 * 109.47092 * 184.87936 * 11 10 8 13 13 C 1.52996 * 109.47328 * 183.71726 * 12 11 10 14 14 C 1.52998 * 115.55000 * 294.70177 * 13 12 11 15 15 N 1.46503 * 109.47297 * 302.56175 * 14 13 12 16 16 C 1.36935 * 120.00083 * 174.76186 * 15 14 13 17 17 H 1.08005 * 120.00002 * 4.75994 * 16 15 14 18 18 C 1.38810 * 119.99762 * 184.48547 * 16 15 14 19 19 N 1.31625 * 119.99724 * 174.35021 * 18 16 15 20 20 Si 1.86801 * 120.00181 * 354.35032 * 18 16 15 21 21 H 1.48495 * 109.46956 * 94.01766 * 20 18 16 22 22 H 1.48503 * 109.46822 * 214.01521 * 20 18 16 23 23 H 1.48498 * 109.46860 * 334.01471 * 20 18 16 24 24 C 1.53005 * 117.49939 * 80.36953 * 13 12 11 25 25 C 1.52999 * 117.50000 * 149.03220 * 13 12 11 26 26 C 1.53072 * 108.46002 * 67.51487 * 6 5 3 27 27 C 1.50192 * 109.88254 * 311.16646 * 26 6 5 28 28 O 1.21279 * 118.22989 * 197.51051 * 27 26 6 29 29 N 1.33355 * 123.52160 * 17.47702 * 27 26 6 30 30 H 1.09005 * 109.47093 * 60.00076 * 1 2 3 31 31 H 1.09000 * 109.47612 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47374 * 300.00438 * 1 2 3 33 33 H 1.08993 * 109.47213 * 240.00168 * 2 1 3 34 34 H 1.08999 * 109.46704 * 119.99790 * 2 1 3 35 35 H 1.08993 * 109.60200 * 69.38612 * 5 3 2 36 36 H 1.08996 * 109.60207 * 308.89350 * 5 3 2 37 37 H 0.96993 * 119.99968 * 4.73471 * 10 8 6 38 38 H 1.09000 * 109.46714 * 64.88457 * 11 10 8 39 39 H 1.08999 * 109.47395 * 304.88405 * 11 10 8 40 40 H 1.09008 * 109.46871 * 63.71995 * 12 11 10 41 41 H 1.08998 * 109.47129 * 303.72117 * 12 11 10 42 42 H 1.09000 * 109.47167 * 182.56257 * 14 13 12 43 43 H 1.09002 * 109.47257 * 62.56187 * 14 13 12 44 44 H 0.96993 * 119.99594 * 354.76028 * 15 14 13 45 45 H 0.96995 * 119.99614 * 180.02562 * 19 18 16 46 46 H 1.08995 * 117.49859 * 215.00723 * 24 13 12 47 47 H 1.09001 * 117.49580 * 0.02690 * 24 13 12 48 48 H 1.08998 * 117.49724 * 359.97279 * 25 13 12 49 49 H 1.08994 * 117.50239 * 144.97962 * 25 13 12 50 50 H 1.08993 * 109.39688 * 71.24228 * 26 6 5 51 51 H 1.09000 * 109.39946 * 190.98566 * 26 6 5 52 52 H 0.97000 * 117.94251 * 177.83011 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6096 1.9768 -0.8470 5 6 3.5640 1.4398 -0.1257 6 6 4.0782 2.8659 0.1052 7 1 3.5460 3.5580 -0.5474 8 6 5.5553 2.9263 -0.1879 9 8 6.1417 1.9303 -0.5555 10 7 6.2244 4.0870 -0.0415 11 6 7.6358 4.1722 -0.4249 12 6 8.1845 5.5496 -0.0475 13 6 9.6310 5.6723 -0.5307 14 6 10.6328 4.7299 0.1396 15 7 10.6119 4.9453 1.5885 16 6 11.3508 4.1380 2.4115 17 1 12.0082 3.3927 1.9887 18 6 11.2592 4.2815 3.7892 19 7 11.8820 3.4350 4.5818 20 14 10.2523 5.6757 4.5182 21 1 8.8790 5.1933 4.8122 22 1 10.8918 6.1441 5.7740 23 1 10.1857 6.7980 3.5481 24 6 9.8569 6.0102 -2.0057 25 6 10.1274 7.0637 -0.9286 26 6 3.8274 3.2406 1.5680 27 6 2.4093 2.9170 1.9422 28 8 1.9468 3.4326 2.9378 29 7 1.6314 2.0937 1.2384 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 3.8480 1.1057 -1.1236 36 1 3.9914 0.7715 0.6218 37 1 5.7715 4.8659 0.3176 38 1 7.7295 4.0261 -1.5010 39 1 8.2013 3.4003 0.0971 40 1 8.1518 5.6696 1.0354 41 1 7.5777 6.3236 -0.5173 42 1 11.6333 4.9312 -0.2432 43 1 10.3615 3.6968 -0.0781 44 1 10.0746 5.6599 1.9648 45 1 11.8177 3.5350 5.5444 46 1 10.7192 5.5611 -2.4986 47 1 8.9750 6.1455 -2.6318 48 1 9.4232 7.8917 -0.8466 49 1 11.1674 7.3079 -0.7126 50 1 4.5074 2.6780 2.2075 51 1 4.0041 4.3076 1.7038 52 1 0.7378 1.9169 1.5716 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166341465.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:48 Heat of formation + Delta-G solvation = -83.608640 kcal Electronic energy + Delta-G solvation = -29652.690484 eV Core-core repulsion = 25651.132824 eV Total energy + Delta-G solvation = -4001.557661 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.86447 -40.53717 -39.57002 -38.10272 -36.15343 -35.82272 -34.99170 -33.23915 -33.05453 -31.17860 -29.96432 -28.13202 -26.70926 -24.95006 -24.26363 -23.64480 -22.95823 -22.68231 -21.43801 -20.40088 -20.25659 -19.23173 -18.48695 -17.92707 -17.43877 -17.01142 -16.68692 -16.62582 -16.38369 -16.17944 -15.67158 -15.35090 -15.30655 -14.98923 -14.85973 -14.76471 -14.57282 -14.34909 -14.11378 -14.01102 -13.81374 -13.44884 -13.10838 -13.01844 -12.88390 -12.45272 -12.38796 -12.34324 -12.27695 -12.20120 -12.12581 -11.95728 -11.87172 -11.79330 -11.77824 -11.37470 -11.12933 -10.95081 -10.69527 -10.52803 -10.12988 -10.07650 -9.28566 -8.04624 -5.36914 1.34424 1.38870 1.46813 1.50647 1.57748 2.12654 2.23545 2.46750 2.86332 3.25782 3.34743 3.49990 3.57737 3.67892 3.69787 3.81847 3.93062 4.00031 4.06611 4.07118 4.12191 4.18212 4.29459 4.41408 4.47507 4.49105 4.52998 4.63549 4.64952 4.72849 4.84718 4.86349 4.94555 4.95207 4.99628 5.10471 5.14653 5.16418 5.17305 5.26375 5.26809 5.31747 5.36775 5.41823 5.46942 5.74385 5.78334 6.19825 6.26912 6.53405 7.07340 7.12694 7.23322 7.83778 8.05412 9.17276 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011271 B = 0.002722 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.588221 B =10285.566371 C =11524.772721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.135 4.135 3 C 0.144 3.856 4 H 0.107 0.893 5 C -0.113 4.113 6 C -0.096 4.096 7 H 0.141 0.859 8 C 0.514 3.486 9 O -0.578 6.578 10 N -0.717 5.717 11 C 0.129 3.871 12 C -0.079 4.079 13 C -0.147 4.147 14 C 0.189 3.811 15 N -0.748 5.748 16 C -0.234 4.234 17 H 0.050 0.950 18 C -0.065 4.065 19 N -0.985 5.985 20 Si 0.954 3.046 21 H -0.279 1.279 22 H -0.296 1.296 23 H -0.245 1.245 24 C -0.147 4.147 25 C -0.164 4.164 26 C -0.127 4.127 27 C 0.525 3.475 28 O -0.603 6.603 29 N -0.704 5.704 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.061 0.939 37 H 0.415 0.585 38 H 0.073 0.927 39 H 0.035 0.965 40 H 0.058 0.942 41 H 0.103 0.897 42 H 0.017 0.983 43 H 0.020 0.980 44 H 0.367 0.633 45 H 0.257 0.743 46 H 0.093 0.907 47 H 0.120 0.880 48 H 0.114 0.886 49 H 0.083 0.917 50 H 0.092 0.908 51 H 0.122 0.878 52 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.615 2.579 -18.261 31.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.173 4.173 3 C 0.040 3.960 4 H 0.124 0.876 5 C -0.151 4.151 6 C -0.117 4.117 7 H 0.158 0.842 8 C 0.301 3.699 9 O -0.457 6.457 10 N -0.369 5.369 11 C 0.005 3.995 12 C -0.117 4.117 13 C -0.149 4.149 14 C 0.063 3.937 15 N -0.394 5.394 16 C -0.365 4.365 17 H 0.068 0.932 18 C -0.257 4.257 19 N -0.635 5.635 20 Si 0.781 3.219 21 H -0.205 1.205 22 H -0.223 1.223 23 H -0.170 1.170 24 C -0.185 4.185 25 C -0.201 4.201 26 C -0.168 4.168 27 C 0.313 3.687 28 O -0.486 6.486 29 N -0.356 5.356 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.252 0.748 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.122 0.878 42 H 0.035 0.965 43 H 0.038 0.962 44 H 0.201 0.799 45 H 0.066 0.934 46 H 0.112 0.888 47 H 0.138 0.862 48 H 0.132 0.868 49 H 0.101 0.899 50 H 0.111 0.889 51 H 0.140 0.860 52 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -25.052 2.002 -18.112 30.979 hybrid contribution -0.085 0.338 1.572 1.610 sum -25.137 2.340 -16.540 30.182 Atomic orbital electron populations 1.21811 0.94525 1.02654 1.02264 1.21914 0.97079 0.94613 1.03711 1.21241 0.94019 0.94501 0.86211 0.87577 1.21794 0.93919 0.94562 1.04863 1.21437 0.91603 1.01237 0.97420 0.84175 1.20925 0.89941 0.82499 0.76504 1.90727 1.70747 1.35904 1.48358 1.45955 1.11893 1.13699 1.65329 1.21167 0.80659 0.97719 0.99955 1.21150 0.93025 0.96213 1.01269 1.21446 0.95211 0.99059 0.99135 1.20231 0.95230 0.95976 0.82259 1.42573 1.56168 1.37901 1.02781 1.19009 1.17504 1.11420 0.88552 0.93184 1.25539 1.02089 1.01743 0.96305 1.69914 1.50363 1.39939 1.03328 0.85394 0.78294 0.80275 0.77930 1.20479 1.22304 1.16950 1.23081 1.04081 1.01629 0.89691 1.23093 1.02221 0.91849 1.02941 1.21660 0.93136 1.05717 0.96240 1.20148 0.88416 0.77908 0.82221 1.90771 1.74905 1.53992 1.28909 1.45726 1.17933 1.45998 1.25903 0.91207 0.91915 0.93011 0.88902 0.92245 0.88075 0.91995 0.74839 0.90918 0.94623 0.92373 0.87838 0.96493 0.96243 0.79885 0.93387 0.88847 0.86208 0.86788 0.89879 0.88936 0.86024 0.75943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 9.75 71.98 0.70 -0.23 16 2 C -0.14 -1.06 5.57 30.59 0.17 -0.89 16 3 C 0.14 1.29 3.09 45.11 0.14 1.43 16 4 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 5 C -0.11 -1.53 3.99 30.69 0.12 -1.41 16 6 C -0.10 -1.34 2.61 -11.40 -0.03 -1.37 16 7 H 0.14 1.05 8.13 -2.39 -0.02 1.03 16 8 C 0.51 11.49 7.13 87.66 0.62 12.12 16 9 O -0.58 -18.50 15.88 -3.03 -0.05 -18.55 16 10 N -0.72 -14.30 5.48 -463.05 -2.54 -16.84 16 11 C 0.13 3.27 5.47 86.38 0.47 3.74 16 12 C -0.08 -1.81 5.06 30.59 0.15 -1.66 16 13 C -0.15 -3.93 1.63 -52.18 -0.08 -4.02 16 14 C 0.19 7.28 5.84 86.38 0.50 7.79 16 15 N -0.75 -35.23 5.18 -343.45 -1.78 -37.01 16 16 C -0.23 -13.74 10.47 84.03 0.88 -12.86 16 17 H 0.05 3.26 8.06 -2.91 -0.02 3.23 16 18 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 19 N -0.98 -64.90 13.97 21.65 0.30 -64.60 16 20 Si 0.95 46.04 27.77 68.60 1.90 47.94 16 21 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 22 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 23 H -0.25 -10.46 6.49 99.48 0.65 -9.81 16 24 C -0.15 -2.93 9.97 30.62 0.31 -2.62 16 25 C -0.16 -3.64 9.92 30.62 0.30 -3.34 16 26 C -0.13 -2.16 5.17 29.71 0.15 -2.01 16 27 C 0.53 10.58 7.71 87.72 0.68 11.26 16 28 O -0.60 -17.89 17.78 -3.03 -0.05 -17.94 16 29 N -0.70 -9.52 5.12 -446.61 -2.28 -11.81 16 30 H 0.07 0.29 8.14 -2.38 -0.02 0.27 16 31 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.05 0.34 6.62 -2.39 -0.02 0.32 16 33 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.10 1.33 7.89 -2.39 -0.02 1.32 16 36 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 37 H 0.41 5.51 8.07 -92.71 -0.75 4.76 16 38 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.04 1.25 7.31 -2.39 -0.02 1.23 16 40 H 0.06 1.58 7.21 -2.38 -0.02 1.56 16 41 H 0.10 1.58 8.09 -2.39 -0.02 1.56 16 42 H 0.02 0.68 8.11 -2.39 -0.02 0.66 16 43 H 0.02 0.81 7.39 -2.39 -0.02 0.80 16 44 H 0.37 16.27 4.70 -92.71 -0.44 15.83 16 45 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 46 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 49 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 50 H 0.09 1.93 8.09 -2.39 -0.02 1.91 16 51 H 0.12 1.70 7.85 -2.39 -0.02 1.68 16 52 H 0.40 5.03 6.97 -92.71 -0.65 4.38 16 Total: -1.00 -84.14 413.09 0.10 -84.03 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: -0.96 Total: 32.34 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 5.56 Total: 2.43 kcal Atomic # 7 Polarization: -123.96 SS G_CDS: -6.30 Total: -130.26 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -0.10 Total: -36.48 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.90 Total: 47.94 kcal Total: -84.14 0.10 -84.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166341465.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.426 kcal (2) G-P(sol) polarization free energy of solvation -84.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds