Wall clock time and date at job start Tue Mar 31 2020 20:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46966 * 2 1 4 4 H 1.09001 * 109.12377 * 55.52262 * 3 2 1 5 5 C 1.52920 * 109.29852 * 174.99875 * 3 2 1 6 6 C 1.53342 * 108.67372 * 171.07001 * 5 3 2 7 7 H 1.09003 * 109.67492 * 172.70137 * 6 5 3 8 8 C 1.50694 * 109.67712 * 52.20467 * 6 5 3 9 9 O 1.21289 * 119.99694 * 269.51903 * 8 6 5 10 10 N 1.34768 * 120.00156 * 89.51876 * 8 6 5 11 11 C 1.46508 * 119.99913 * 185.43523 * 10 8 6 12 12 C 1.53007 * 109.46831 * 184.75362 * 11 10 8 13 13 C 1.52995 * 109.46839 * 183.79366 * 12 11 10 14 14 C 1.53002 * 115.55401 * 294.51948 * 13 12 11 15 15 N 1.46498 * 109.47366 * 279.76448 * 14 13 12 16 16 C 1.36935 * 120.00276 * 175.07957 * 15 14 13 17 17 H 1.08001 * 119.99962 * 4.53939 * 16 15 14 18 18 C 1.38810 * 120.00001 * 184.53380 * 16 15 14 19 19 N 1.31618 * 120.00008 * 173.21897 * 18 16 15 20 20 Si 1.86803 * 120.00148 * 353.21989 * 18 16 15 21 21 H 1.48497 * 109.47126 * 93.03092 * 20 18 16 22 22 H 1.48503 * 109.46865 * 213.03011 * 20 18 16 23 23 H 1.48501 * 109.47119 * 333.02969 * 20 18 16 24 24 C 1.53000 * 117.51944 * 80.22575 * 13 12 11 25 25 C 1.52995 * 60.00256 * 107.48047 * 24 13 12 26 26 C 1.53074 * 108.42497 * 292.46688 * 6 5 3 27 27 C 1.50189 * 109.88233 * 48.91952 * 26 6 5 28 28 O 1.21279 * 118.24214 * 162.42389 * 27 26 6 29 29 N 1.33351 * 123.50808 * 342.37699 * 27 26 6 30 30 H 1.09000 * 109.47305 * 300.00098 * 1 2 3 31 31 H 1.09007 * 109.47576 * 59.99603 * 1 2 3 32 32 H 1.08996 * 109.47213 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47107 * 240.00595 * 2 1 3 34 34 H 1.08997 * 109.47036 * 120.00281 * 2 1 3 35 35 H 1.08997 * 109.60146 * 51.31164 * 5 3 2 36 36 H 1.09003 * 109.60663 * 290.82681 * 5 3 2 37 37 H 0.97005 * 120.00386 * 5.43088 * 10 8 6 38 38 H 1.08989 * 109.47453 * 64.75545 * 11 10 8 39 39 H 1.08998 * 109.47003 * 304.74543 * 11 10 8 40 40 H 1.09003 * 109.47175 * 63.79302 * 12 11 10 41 41 H 1.08995 * 109.46993 * 303.79347 * 12 11 10 42 42 H 1.08996 * 109.47500 * 159.75939 * 14 13 12 43 43 H 1.09007 * 109.46433 * 39.75908 * 14 13 12 44 44 H 0.97001 * 119.99570 * 355.08179 * 15 14 13 45 45 H 0.97001 * 120.00255 * 180.02562 * 19 18 16 46 46 H 1.08999 * 117.49807 * 214.97012 * 24 13 12 47 47 H 1.08999 * 117.50134 * 359.97438 * 24 13 12 48 48 H 1.09004 * 117.49807 * 252.51414 * 25 24 13 49 49 H 1.08997 * 117.50064 * 107.48699 * 25 24 13 50 50 H 1.08996 * 109.40215 * 169.02706 * 26 6 5 51 51 H 1.09003 * 109.40631 * 288.77566 * 26 6 5 52 52 H 0.96997 * 117.94857 * 182.24709 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6093 1.9735 0.8490 5 6 3.5640 1.4398 0.1258 6 6 4.0778 2.8669 -0.0998 7 1 5.1460 2.9102 0.1130 8 6 3.3412 3.8204 0.8053 9 8 2.3222 4.3551 0.4222 10 7 3.8147 4.0790 2.0402 11 6 3.0384 4.9111 2.9630 12 6 3.8464 5.1455 4.2410 13 6 2.9999 5.9342 5.2420 14 6 2.6419 7.3616 4.8233 15 7 3.7788 8.2473 5.0860 16 6 3.7287 9.5594 4.6975 17 1 2.8242 9.9601 4.2640 18 6 4.8402 10.3746 4.8610 19 7 4.8395 11.5951 4.3682 20 14 6.3372 9.7396 5.7804 21 1 7.2993 9.1521 4.8137 22 1 6.9862 10.8619 6.5046 23 1 5.9162 8.7000 6.7536 24 6 1.9661 5.1577 6.0601 25 6 3.2407 5.6741 6.7304 26 6 3.8270 3.2460 -1.5615 27 6 2.4086 2.9248 -1.9363 28 8 1.9458 3.4444 -2.9296 29 7 1.6312 2.0981 -1.2359 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.9916 0.7743 -0.6240 36 1 3.8481 1.1021 1.1225 37 1 4.6695 3.7142 2.3182 38 1 2.1053 4.4055 3.2108 39 1 2.8187 5.8689 2.4914 40 1 4.7476 5.7104 4.0026 41 1 4.1239 4.1856 4.6766 42 1 1.7773 7.7015 5.3934 43 1 2.4055 7.3796 3.7593 44 1 4.5672 7.9042 5.5350 45 1 5.6164 12.1646 4.4820 46 1 1.0309 5.6637 6.2999 47 1 1.8886 4.0846 5.8849 48 1 4.0021 4.9407 6.9964 49 1 3.1442 6.5198 7.4112 50 1 4.0035 4.3133 -1.6941 51 1 4.5071 2.6854 -2.2028 52 1 0.7376 1.9222 -1.5698 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166341467.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:52 Heat of formation + Delta-G solvation = -52.906463 kcal Electronic energy + Delta-G solvation = -30046.845291 eV Core-core repulsion = 26046.618976 eV Total energy + Delta-G solvation = -4000.226314 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.26555 -39.29730 -38.40125 -37.17114 -35.01698 -34.25051 -34.01416 -32.30899 -31.10657 -30.24585 -29.44189 -26.45477 -25.74598 -24.13720 -22.96215 -22.50003 -21.98264 -21.68698 -21.06498 -19.61930 -18.69750 -17.58538 -17.43600 -16.82650 -16.56591 -16.02325 -15.83482 -15.34584 -15.18511 -14.77987 -14.54474 -14.47358 -14.21527 -14.10242 -13.89721 -13.72821 -13.45338 -13.18155 -12.91011 -12.67117 -12.41069 -12.26114 -12.24639 -12.10276 -11.81360 -11.71849 -11.64171 -11.41204 -11.35624 -11.25630 -11.21544 -10.95018 -10.73273 -10.21670 -9.93808 -9.88538 -9.83592 -9.65828 -9.49565 -9.20692 -9.12970 -8.85293 -7.20832 -5.76252 -3.10782 2.43439 2.64067 2.95007 3.14331 3.35839 3.38896 3.44139 3.89630 4.04090 4.08044 4.15947 4.37976 4.58182 4.59262 4.63831 4.70420 4.81379 4.87696 4.92166 4.95605 4.99485 5.09576 5.12111 5.19432 5.26020 5.29171 5.36073 5.46037 5.48366 5.51365 5.52500 5.54572 5.60403 5.67733 5.76047 5.79882 5.84811 6.01507 6.07234 6.21419 6.27710 6.32583 6.34647 6.65427 6.67289 6.72298 7.23957 7.33971 8.02068 8.07906 8.15580 8.43249 9.23051 9.95124 10.16303 11.42164 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014042 B = 0.002593 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.477264 B =10794.259688 C =11793.594334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.134 4.134 3 C 0.138 3.862 4 H 0.076 0.924 5 C -0.119 4.119 6 C -0.114 4.114 7 H 0.106 0.894 8 C 0.510 3.490 9 O -0.523 6.523 10 N -0.726 5.726 11 C 0.121 3.879 12 C -0.088 4.088 13 C -0.127 4.127 14 C 0.191 3.809 15 N -0.751 5.751 16 C -0.243 4.243 17 H 0.089 0.911 18 C 0.004 3.996 19 N -0.932 5.932 20 Si 0.882 3.118 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.276 1.276 24 C -0.171 4.171 25 C -0.168 4.168 26 C -0.119 4.119 27 C 0.537 3.463 28 O -0.561 6.561 29 N -0.707 5.707 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.398 0.602 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.024 0.976 43 H 0.037 0.963 44 H 0.361 0.639 45 H 0.259 0.741 46 H 0.094 0.906 47 H 0.089 0.911 48 H 0.088 0.912 49 H 0.098 0.902 50 H 0.106 0.894 51 H 0.107 0.893 52 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.571 -30.192 -4.658 30.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.173 4.173 3 C 0.032 3.968 4 H 0.094 0.906 5 C -0.157 4.157 6 C -0.136 4.136 7 H 0.124 0.876 8 C 0.295 3.705 9 O -0.399 6.399 10 N -0.378 5.378 11 C -0.002 4.002 12 C -0.126 4.126 13 C -0.128 4.128 14 C 0.064 3.936 15 N -0.396 5.396 16 C -0.373 4.373 17 H 0.107 0.893 18 C -0.191 4.191 19 N -0.580 5.580 20 Si 0.712 3.288 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.202 1.202 24 C -0.209 4.209 25 C -0.205 4.205 26 C -0.159 4.159 27 C 0.325 3.675 28 O -0.440 6.440 29 N -0.360 5.360 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.232 0.768 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.042 0.958 43 H 0.055 0.945 44 H 0.193 0.807 45 H 0.069 0.931 46 H 0.113 0.887 47 H 0.108 0.892 48 H 0.107 0.893 49 H 0.116 0.884 50 H 0.124 0.876 51 H 0.125 0.875 52 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -2.431 -29.256 -5.465 29.861 hybrid contribution 1.306 -0.475 0.956 1.687 sum -1.125 -29.731 -4.509 30.092 Atomic orbital electron populations 1.21801 0.95246 1.02139 1.02241 1.21923 0.96810 0.95382 1.03144 1.20992 0.94655 0.93321 0.87790 0.90578 1.21889 0.94734 0.94848 1.04224 1.21484 1.01897 0.95176 0.95055 0.87577 1.20426 0.85749 0.82286 0.82075 1.90793 1.24843 1.50370 1.73866 1.46052 1.24270 1.53097 1.14378 1.21407 0.94116 0.95677 0.88990 1.21228 0.98637 0.99168 0.93578 1.21652 1.01731 0.97283 0.92173 1.20188 0.90655 0.84688 0.98084 1.42639 1.16604 1.08348 1.72026 1.19058 0.99564 0.84846 1.33855 0.89304 1.24665 0.97396 0.96146 1.00936 1.69726 1.30465 1.08272 1.49571 0.86549 0.84058 0.77910 0.80250 1.21224 1.21783 1.20189 1.22997 0.94079 0.99333 1.04488 1.22951 0.99274 1.03133 0.95156 1.21529 0.94463 1.05204 0.94723 1.19761 0.88171 0.77293 0.82307 1.90751 1.74263 1.51193 1.27779 1.45404 1.17975 1.47216 1.25367 0.92205 0.92642 0.92169 0.91118 0.90360 0.89436 0.89172 0.76775 0.91721 0.90209 0.90319 0.91870 0.95816 0.94509 0.80659 0.93098 0.88722 0.89244 0.89319 0.88356 0.87558 0.87489 0.76676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 9.75 37.16 0.36 -0.47 16 2 C -0.13 -0.64 5.58 -26.73 -0.15 -0.79 16 3 C 0.14 0.96 2.33 -68.37 -0.16 0.80 16 4 H 0.08 0.67 7.13 -51.93 -0.37 0.30 16 5 C -0.12 -0.59 4.93 -26.59 -0.13 -0.72 16 6 C -0.11 -0.81 3.07 -91.56 -0.28 -1.09 16 7 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 8 C 0.51 5.59 5.76 -10.99 -0.06 5.53 16 9 O -0.52 -8.22 14.24 5.55 0.08 -8.14 16 10 N -0.73 -6.98 5.55 -60.29 -0.33 -7.31 16 11 C 0.12 1.48 5.49 -4.03 -0.02 1.45 16 12 C -0.09 -1.06 5.22 -26.73 -0.14 -1.19 16 13 C -0.13 -1.81 1.53 -154.51 -0.24 -2.05 16 14 C 0.19 3.65 6.12 -4.04 -0.02 3.63 16 15 N -0.75 -17.62 5.37 -59.91 -0.32 -17.94 16 16 C -0.24 -6.94 10.46 -15.06 -0.16 -7.09 16 17 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 18 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 19 N -0.93 -29.59 13.97 55.49 0.78 -28.81 16 20 Si 0.88 21.97 27.71 -169.99 -4.71 17.25 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 23 H -0.28 -6.42 6.58 56.52 0.37 -6.05 16 24 C -0.17 -2.03 9.90 -26.73 -0.26 -2.29 16 25 C -0.17 -2.22 9.82 -26.73 -0.26 -2.48 16 26 C -0.12 -1.11 5.27 -28.09 -0.15 -1.26 16 27 C 0.54 6.78 6.38 -11.87 -0.08 6.71 16 28 O -0.56 -9.66 17.78 5.56 0.10 -9.56 16 29 N -0.71 -6.97 4.85 -54.85 -0.27 -7.24 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.32 6.63 -51.93 -0.34 -0.02 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.09 0.32 8.11 -51.93 -0.42 -0.11 16 36 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.40 2.60 8.48 -40.82 -0.35 2.25 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.08 1.26 6.87 -51.93 -0.36 0.90 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 42 H 0.02 0.47 7.95 -51.93 -0.41 0.06 16 43 H 0.04 0.74 6.70 -51.92 -0.35 0.39 16 44 H 0.36 8.22 5.53 -40.82 -0.23 8.00 16 45 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 46 H 0.09 1.13 8.08 -51.93 -0.42 0.71 16 47 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 50 H 0.11 1.17 8.10 -51.93 -0.42 0.75 16 51 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 52 H 0.40 3.85 6.98 -40.82 -0.28 3.56 16 LS Contribution 410.10 15.07 6.18 6.18 Total: -1.00 -37.62 410.10 -9.38 -47.00 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -9.03 Total: 9.85 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -1.85 Total: -1.28 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -0.15 Total: -61.31 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: 0.18 Total: -17.69 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.25 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -37.62 -9.38 -47.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166341467.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.907 kcal (2) G-P(sol) polarization free energy of solvation -37.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds