Wall clock time and date at job start Tue Mar 31 2020 20:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46966 * 2 1 4 4 H 1.09001 * 109.12377 * 55.52262 * 3 2 1 5 5 C 1.52920 * 109.29852 * 174.99875 * 3 2 1 6 6 C 1.53342 * 108.67372 * 171.07001 * 5 3 2 7 7 H 1.09003 * 109.67492 * 172.70137 * 6 5 3 8 8 C 1.50694 * 109.67712 * 52.20467 * 6 5 3 9 9 O 1.21289 * 119.99694 * 269.51903 * 8 6 5 10 10 N 1.34768 * 120.00156 * 89.51876 * 8 6 5 11 11 C 1.46508 * 119.99913 * 185.43523 * 10 8 6 12 12 C 1.53007 * 109.46831 * 184.75362 * 11 10 8 13 13 C 1.52995 * 109.46839 * 183.79366 * 12 11 10 14 14 C 1.53002 * 115.55401 * 294.51948 * 13 12 11 15 15 N 1.46498 * 109.47366 * 279.76448 * 14 13 12 16 16 C 1.36935 * 120.00276 * 175.07957 * 15 14 13 17 17 H 1.08001 * 119.99962 * 4.53939 * 16 15 14 18 18 C 1.38810 * 120.00001 * 184.53380 * 16 15 14 19 19 N 1.31618 * 120.00008 * 173.21897 * 18 16 15 20 20 Si 1.86803 * 120.00148 * 353.21989 * 18 16 15 21 21 H 1.48497 * 109.47126 * 93.03092 * 20 18 16 22 22 H 1.48503 * 109.46865 * 213.03011 * 20 18 16 23 23 H 1.48501 * 109.47119 * 333.02969 * 20 18 16 24 24 C 1.53000 * 117.51944 * 80.22575 * 13 12 11 25 25 C 1.52995 * 60.00256 * 107.48047 * 24 13 12 26 26 C 1.53074 * 108.42497 * 292.46688 * 6 5 3 27 27 C 1.50189 * 109.88233 * 48.91952 * 26 6 5 28 28 O 1.21279 * 118.24214 * 162.42389 * 27 26 6 29 29 N 1.33351 * 123.50808 * 342.37699 * 27 26 6 30 30 H 1.09000 * 109.47305 * 300.00098 * 1 2 3 31 31 H 1.09007 * 109.47576 * 59.99603 * 1 2 3 32 32 H 1.08996 * 109.47213 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47107 * 240.00595 * 2 1 3 34 34 H 1.08997 * 109.47036 * 120.00281 * 2 1 3 35 35 H 1.08997 * 109.60146 * 51.31164 * 5 3 2 36 36 H 1.09003 * 109.60663 * 290.82681 * 5 3 2 37 37 H 0.97005 * 120.00386 * 5.43088 * 10 8 6 38 38 H 1.08989 * 109.47453 * 64.75545 * 11 10 8 39 39 H 1.08998 * 109.47003 * 304.74543 * 11 10 8 40 40 H 1.09003 * 109.47175 * 63.79302 * 12 11 10 41 41 H 1.08995 * 109.46993 * 303.79347 * 12 11 10 42 42 H 1.08996 * 109.47500 * 159.75939 * 14 13 12 43 43 H 1.09007 * 109.46433 * 39.75908 * 14 13 12 44 44 H 0.97001 * 119.99570 * 355.08179 * 15 14 13 45 45 H 0.97001 * 120.00255 * 180.02562 * 19 18 16 46 46 H 1.08999 * 117.49807 * 214.97012 * 24 13 12 47 47 H 1.08999 * 117.50134 * 359.97438 * 24 13 12 48 48 H 1.09004 * 117.49807 * 252.51414 * 25 24 13 49 49 H 1.08997 * 117.50064 * 107.48699 * 25 24 13 50 50 H 1.08996 * 109.40215 * 169.02706 * 26 6 5 51 51 H 1.09003 * 109.40631 * 288.77566 * 26 6 5 52 52 H 0.96997 * 117.94857 * 182.24709 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6093 1.9735 0.8490 5 6 3.5640 1.4398 0.1258 6 6 4.0778 2.8669 -0.0998 7 1 5.1460 2.9102 0.1130 8 6 3.3412 3.8204 0.8053 9 8 2.3222 4.3551 0.4222 10 7 3.8147 4.0790 2.0402 11 6 3.0384 4.9111 2.9630 12 6 3.8464 5.1455 4.2410 13 6 2.9999 5.9342 5.2420 14 6 2.6419 7.3616 4.8233 15 7 3.7788 8.2473 5.0860 16 6 3.7287 9.5594 4.6975 17 1 2.8242 9.9601 4.2640 18 6 4.8402 10.3746 4.8610 19 7 4.8395 11.5951 4.3682 20 14 6.3372 9.7396 5.7804 21 1 7.2993 9.1521 4.8137 22 1 6.9862 10.8619 6.5046 23 1 5.9162 8.7000 6.7536 24 6 1.9661 5.1577 6.0601 25 6 3.2407 5.6741 6.7304 26 6 3.8270 3.2460 -1.5615 27 6 2.4086 2.9248 -1.9363 28 8 1.9458 3.4444 -2.9296 29 7 1.6312 2.0981 -1.2359 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.9916 0.7743 -0.6240 36 1 3.8481 1.1021 1.1225 37 1 4.6695 3.7142 2.3182 38 1 2.1053 4.4055 3.2108 39 1 2.8187 5.8689 2.4914 40 1 4.7476 5.7104 4.0026 41 1 4.1239 4.1856 4.6766 42 1 1.7773 7.7015 5.3934 43 1 2.4055 7.3796 3.7593 44 1 4.5672 7.9042 5.5350 45 1 5.6164 12.1646 4.4820 46 1 1.0309 5.6637 6.2999 47 1 1.8886 4.0846 5.8849 48 1 4.0021 4.9407 6.9964 49 1 3.1442 6.5198 7.4112 50 1 4.0035 4.3133 -1.6941 51 1 4.5071 2.6854 -2.2028 52 1 0.7376 1.9222 -1.5698 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166341467.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:51 Heat of formation + Delta-G solvation = -82.200658 kcal Electronic energy + Delta-G solvation = -30048.115582 eV Core-core repulsion = 26046.618976 eV Total energy + Delta-G solvation = -4001.496606 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.04096 -40.26354 -39.52755 -37.95266 -36.19542 -35.73505 -34.88324 -33.22602 -33.00583 -31.19419 -30.00828 -28.16024 -26.53654 -24.84668 -24.32564 -23.73832 -22.92193 -22.50704 -21.88665 -20.63968 -20.06489 -19.09913 -18.33946 -17.63024 -17.36089 -16.92581 -16.74918 -16.57615 -16.32443 -16.16154 -15.75660 -15.44316 -15.16840 -14.95167 -14.81728 -14.70455 -14.39681 -14.37460 -14.04762 -13.88945 -13.58344 -13.52484 -13.11238 -12.99255 -12.88420 -12.84823 -12.47565 -12.33624 -12.28974 -12.19832 -12.13306 -11.95377 -11.84994 -11.78706 -11.73683 -11.13581 -10.93849 -10.84571 -10.74318 -10.59331 -10.06514 -10.01094 -9.30355 -8.05128 -5.38387 1.35580 1.40929 1.49318 1.60502 1.72381 2.15957 2.40729 2.47489 2.83894 3.24728 3.50340 3.55407 3.58802 3.73915 3.76591 3.80432 3.86600 3.98445 4.06324 4.14471 4.20102 4.22251 4.43205 4.44865 4.45493 4.52988 4.58992 4.63652 4.74815 4.76809 4.84751 4.86592 4.90312 4.93038 4.95332 5.08495 5.09199 5.11767 5.16301 5.26139 5.28057 5.33840 5.36013 5.39499 5.49265 5.72839 5.84652 6.18973 6.43451 6.60504 7.06430 7.25534 7.31293 7.82009 8.05371 9.16821 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014042 B = 0.002593 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.477264 B =10794.259688 C =11793.594334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.125 4.125 3 C 0.130 3.870 4 H 0.056 0.944 5 C -0.113 4.113 6 C -0.103 4.103 7 H 0.150 0.850 8 C 0.503 3.497 9 O -0.582 6.582 10 N -0.711 5.711 11 C 0.129 3.871 12 C -0.075 4.075 13 C -0.147 4.147 14 C 0.188 3.812 15 N -0.748 5.748 16 C -0.240 4.240 17 H 0.045 0.955 18 C -0.067 4.067 19 N -0.986 5.986 20 Si 0.961 3.039 21 H -0.274 1.274 22 H -0.296 1.296 23 H -0.246 1.246 24 C -0.148 4.148 25 C -0.164 4.164 26 C -0.119 4.119 27 C 0.525 3.475 28 O -0.624 6.624 29 N -0.701 5.701 30 H 0.050 0.950 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.123 0.877 37 H 0.419 0.581 38 H 0.067 0.933 39 H 0.030 0.970 40 H 0.062 0.938 41 H 0.107 0.893 42 H 0.012 0.988 43 H 0.017 0.983 44 H 0.369 0.631 45 H 0.258 0.742 46 H 0.087 0.913 47 H 0.123 0.877 48 H 0.119 0.881 49 H 0.077 0.923 50 H 0.081 0.919 51 H 0.142 0.858 52 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.345 -35.272 -2.340 35.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.163 4.163 3 C 0.026 3.974 4 H 0.074 0.926 5 C -0.151 4.151 6 C -0.125 4.125 7 H 0.167 0.833 8 C 0.290 3.710 9 O -0.461 6.461 10 N -0.364 5.364 11 C 0.005 3.995 12 C -0.113 4.113 13 C -0.148 4.148 14 C 0.062 3.938 15 N -0.393 5.393 16 C -0.371 4.371 17 H 0.064 0.936 18 C -0.258 4.258 19 N -0.636 5.636 20 Si 0.787 3.213 21 H -0.200 1.200 22 H -0.223 1.223 23 H -0.170 1.170 24 C -0.186 4.186 25 C -0.201 4.201 26 C -0.159 4.159 27 C 0.314 3.686 28 O -0.508 6.508 29 N -0.351 5.351 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.131 0.869 36 H 0.142 0.858 37 H 0.256 0.744 38 H 0.086 0.914 39 H 0.049 0.951 40 H 0.080 0.920 41 H 0.126 0.874 42 H 0.030 0.970 43 H 0.035 0.965 44 H 0.202 0.798 45 H 0.067 0.933 46 H 0.106 0.894 47 H 0.141 0.859 48 H 0.137 0.863 49 H 0.095 0.905 50 H 0.099 0.901 51 H 0.160 0.840 52 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 0.498 -34.430 -3.078 34.571 hybrid contribution 0.194 1.172 0.214 1.207 sum 0.692 -33.258 -2.863 33.388 Atomic orbital electron populations 1.21834 0.96210 1.02539 1.01234 1.21884 0.95935 0.93813 1.04650 1.21255 0.96749 0.94043 0.85390 0.92641 1.22022 0.92480 0.93496 1.07066 1.21557 1.03758 0.95171 0.91973 0.83265 1.21252 0.85146 0.82088 0.82477 1.90784 1.27625 1.52693 1.74987 1.45886 1.24733 1.52075 1.13686 1.21130 0.95052 0.93888 0.89421 1.21143 0.97029 1.00518 0.92575 1.21477 1.04735 0.94660 0.93887 1.20241 0.89029 0.87691 0.96825 1.42557 1.18082 1.06910 1.71786 1.19005 0.98055 0.87202 1.32878 0.93642 1.25617 1.01424 0.96378 1.02373 1.69933 1.31777 1.10212 1.51654 0.85300 0.79053 0.77779 0.79148 1.20006 1.22270 1.16968 1.23094 0.93146 1.00698 1.01637 1.23026 1.00840 1.03163 0.93066 1.21579 0.92796 1.04267 0.97289 1.20483 0.89713 0.76803 0.81636 1.90706 1.75801 1.53690 1.30624 1.45538 1.17496 1.46269 1.25779 0.93039 0.93926 0.91019 0.90319 0.87921 0.86874 0.85849 0.74375 0.91428 0.95147 0.91950 0.87442 0.96969 0.96480 0.79770 0.93280 0.89434 0.85882 0.86269 0.90474 0.90060 0.84000 0.77243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.75 71.98 0.70 -0.82 16 2 C -0.12 -0.83 5.58 30.60 0.17 -0.66 16 3 C 0.13 1.54 2.33 45.11 0.10 1.65 16 4 H 0.06 0.92 7.13 -2.39 -0.02 0.90 16 5 C -0.11 -0.60 4.93 30.68 0.15 -0.45 16 6 C -0.10 -1.12 3.07 -11.40 -0.03 -1.16 16 7 H 0.15 0.42 8.14 -2.39 -0.02 0.40 16 8 C 0.50 10.40 5.76 87.66 0.51 10.91 16 9 O -0.58 -19.02 14.24 -3.06 -0.04 -19.07 16 10 N -0.71 -11.93 5.55 -463.06 -2.57 -14.50 16 11 C 0.13 3.02 5.49 86.38 0.47 3.50 16 12 C -0.08 -1.56 5.22 30.59 0.16 -1.40 16 13 C -0.15 -3.88 1.53 -52.18 -0.08 -3.96 16 14 C 0.19 7.40 6.12 86.38 0.53 7.92 16 15 N -0.75 -35.43 5.37 -343.45 -1.84 -37.28 16 16 C -0.24 -14.26 10.46 84.03 0.88 -13.38 16 17 H 0.05 3.01 8.06 -2.91 -0.02 2.99 16 18 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 19 N -0.99 -64.88 13.97 21.65 0.30 -64.58 16 20 Si 0.96 45.28 27.71 68.60 1.90 47.18 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 23 H -0.25 -10.23 6.58 99.48 0.65 -9.57 16 24 C -0.15 -3.01 9.90 30.59 0.30 -2.71 16 25 C -0.16 -3.73 9.82 30.59 0.30 -3.43 16 26 C -0.12 -2.09 5.27 29.71 0.16 -1.94 16 27 C 0.52 13.66 6.38 87.72 0.56 14.22 16 28 O -0.62 -23.07 17.78 -3.03 -0.05 -23.13 16 29 N -0.70 -13.95 4.85 -446.63 -2.16 -16.11 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.04 0.50 6.63 -2.38 -0.02 0.49 16 32 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 34 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.11 0.15 8.11 -2.39 -0.02 0.13 16 36 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 37 H 0.42 3.58 8.48 -92.70 -0.79 2.80 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.03 1.01 6.87 -2.39 -0.02 1.00 16 40 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.11 1.35 8.09 -2.39 -0.02 1.33 16 42 H 0.01 0.51 7.95 -2.39 -0.02 0.49 16 43 H 0.02 0.74 6.70 -2.38 -0.02 0.72 16 44 H 0.37 16.22 5.53 -92.71 -0.51 15.71 16 45 H 0.26 16.09 8.31 -92.71 -0.77 15.31 16 46 H 0.09 1.92 8.08 -2.39 -0.02 1.90 16 47 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 49 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 50 H 0.08 1.85 8.10 -2.39 -0.02 1.83 16 51 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 52 H 0.39 8.13 6.98 -92.71 -0.65 7.48 16 Total: -1.00 -91.87 410.10 -0.19 -92.06 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: -1.07 Total: 30.67 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 5.35 Total: 4.75 kcal Atomic # 7 Polarization: -126.19 SS G_CDS: -6.28 Total: -132.47 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -0.10 Total: -42.19 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.18 kcal Total: -91.87 -0.19 -92.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166341467.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.863 kcal (2) G-P(sol) polarization free energy of solvation -91.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds