Wall clock time and date at job start Tue Mar 31 2020 19:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46806 * 2 1 4 4 H 1.08999 * 115.56114 * 29.31572 * 3 2 1 5 5 C 1.53068 * 117.49082 * 243.59886 * 3 2 1 6 6 C 1.53001 * 117.49350 * 174.99791 * 3 2 1 7 7 H 1.08997 * 117.49995 * 359.97438 * 6 3 2 8 8 C 1.50702 * 117.49475 * 214.97939 * 6 3 2 9 9 O 1.21270 * 120.00311 * 0.08721 * 8 6 3 10 10 N 1.34780 * 119.99681 * 180.09131 * 8 6 3 11 11 C 1.46492 * 119.99902 * 179.97438 * 10 8 6 12 12 C 1.52999 * 109.47049 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47053 * 174.72785 * 12 11 10 14 14 C 1.52995 * 115.55288 * 65.35323 * 13 12 11 15 15 N 1.46893 * 109.47347 * 64.03930 * 14 13 12 16 16 C 1.46898 * 111.00342 * 175.87208 * 15 14 13 17 17 C 1.50699 * 109.47252 * 180.02562 * 16 15 14 18 18 O 1.21288 * 120.00022 * 359.97438 * 17 16 15 19 19 N 1.34782 * 119.99867 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99846 * 179.97438 * 19 17 16 21 21 H 1.08001 * 119.99862 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00174 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00439 * 179.97438 * 22 20 19 24 24 Si 1.86808 * 119.99554 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47132 * 90.00054 * 24 22 20 26 26 H 1.48502 * 109.46759 * 209.99668 * 24 22 20 27 27 H 1.48492 * 109.47174 * 329.99383 * 24 22 20 28 28 C 1.53009 * 117.49698 * 211.02365 * 13 12 11 29 29 C 1.53009 * 117.49708 * 279.68199 * 13 12 11 30 30 H 1.08999 * 109.47444 * 59.99944 * 1 2 3 31 31 H 1.09000 * 109.47324 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47153 * 299.99873 * 1 2 3 33 33 H 1.09000 * 109.47153 * 240.00127 * 2 1 3 34 34 H 1.09004 * 109.46756 * 119.99955 * 2 1 3 35 35 H 1.09006 * 117.51272 * 145.04052 * 5 3 2 36 36 H 1.08999 * 117.52056 * 359.97438 * 5 3 2 37 37 H 0.97001 * 119.99987 * 359.97438 * 10 8 6 38 38 H 1.09002 * 109.47170 * 60.00279 * 11 10 8 39 39 H 1.09001 * 109.47260 * 300.00027 * 11 10 8 40 40 H 1.08995 * 109.47484 * 54.72939 * 12 11 10 41 41 H 1.08999 * 109.47584 * 294.72403 * 12 11 10 42 42 H 1.08997 * 109.46958 * 304.03901 * 14 13 12 43 43 H 1.09002 * 109.47406 * 184.03797 * 14 13 12 44 44 H 1.00902 * 111.00334 * 51.91573 * 15 14 13 45 45 H 1.09000 * 109.47601 * 60.00029 * 16 15 14 46 46 H 1.08999 * 109.47125 * 299.99764 * 16 15 14 47 47 H 0.97001 * 120.00213 * 359.72011 * 19 17 16 48 48 H 0.96991 * 120.00077 * 180.02562 * 23 22 20 49 49 H 1.08997 * 117.49608 * 215.00039 * 28 13 12 50 50 H 1.08996 * 117.49966 * 0.02562 * 28 13 12 51 51 H 1.08990 * 117.49944 * 359.97418 * 29 13 12 52 52 H 1.08999 * 117.49867 * 144.97823 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3883 2.1717 0.4814 5 6 2.8447 1.9075 -1.2162 6 6 3.5501 1.6579 0.1183 7 1 4.1802 0.7720 0.1966 8 6 4.0227 2.8621 0.8915 9 8 3.2158 3.6158 1.3928 10 7 5.3423 3.1013 1.0258 11 6 5.8018 4.2721 1.7768 12 6 7.3313 4.3093 1.7778 13 6 7.8096 5.5991 2.4477 14 6 7.4827 5.7298 3.9365 15 7 8.1866 4.6811 4.6864 16 6 7.9744 4.8347 6.1319 17 6 8.7104 3.7440 6.8664 18 8 9.3485 2.9194 6.2468 19 7 8.6587 3.6842 8.2119 20 6 9.3279 2.6915 8.8801 21 1 9.8968 1.9577 8.3284 22 6 9.2751 2.6301 10.2673 23 7 9.9161 1.6784 10.9078 24 14 8.2917 3.8997 11.2216 25 1 6.8978 3.4180 11.3951 26 1 8.9131 4.1076 12.5542 27 1 8.2827 5.1828 10.4742 28 6 9.1277 6.2026 1.9581 29 6 7.7993 6.8775 1.6071 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.7225 2.9427 -1.5350 36 1 3.0111 1.1858 -2.0159 37 1 5.9878 2.4982 0.6250 38 1 5.4396 4.2105 2.8031 39 1 5.4162 5.1780 1.3092 40 1 7.6962 4.2762 0.7513 41 1 7.7154 3.4503 2.3278 42 1 6.4080 5.6224 4.0833 43 1 7.8022 6.7087 4.2941 44 1 9.1707 4.6760 4.4640 45 1 6.9091 4.7666 6.3521 46 1 8.3504 5.8061 6.4530 47 1 8.1511 4.3456 8.7077 48 1 9.8789 1.6353 11.8760 49 1 9.7618 6.6928 2.6968 50 1 9.6537 5.6811 1.1586 51 1 7.4521 6.7997 0.5769 52 1 7.5592 7.8117 2.1148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167280220.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:21 Heat of formation + Delta-G solvation = -36.840057 kcal Electronic energy + Delta-G solvation = -28315.281593 eV Core-core repulsion = 24315.751970 eV Total energy + Delta-G solvation = -3999.529623 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.24008 -39.07901 -38.25037 -37.36351 -35.08230 -34.64329 -33.76978 -32.41698 -31.64822 -30.44569 -28.12935 -25.50316 -24.96267 -24.12430 -23.31005 -22.92738 -22.20151 -20.90849 -20.37573 -19.47949 -18.98851 -18.24576 -17.43559 -16.40913 -16.23352 -15.70745 -15.62458 -15.19233 -15.06212 -14.91818 -14.78629 -14.53866 -14.37643 -13.85338 -13.61734 -13.50832 -13.24324 -12.85352 -12.78695 -12.73437 -12.46283 -12.29011 -12.16492 -11.98958 -11.76305 -11.69155 -11.65569 -11.59610 -11.37861 -11.22730 -11.10669 -10.62505 -10.58829 -10.37651 -10.32508 -10.01954 -9.96656 -9.83680 -9.56315 -9.19374 -8.57718 -8.18185 -8.11140 -6.30419 -3.81721 2.32305 2.92256 3.03233 3.08138 3.15827 3.49408 3.52061 3.75580 4.10546 4.16342 4.26443 4.41848 4.45694 4.53065 4.61113 4.73773 4.79632 4.83944 4.88132 4.97863 4.99443 5.07763 5.16921 5.22173 5.26546 5.28986 5.41144 5.44854 5.46688 5.52021 5.56781 5.64578 5.64965 5.71658 5.74866 5.75613 5.80518 5.82019 5.90084 5.94178 5.95765 6.04208 6.08540 6.16068 6.30366 7.11162 7.33575 7.58739 7.61507 8.07736 8.15304 8.60756 8.95758 9.43410 9.83819 10.82720 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009041 B = 0.002154 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3096.162899 B =12993.069758 C =15247.312402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.117 4.117 4 H 0.118 0.882 5 C -0.150 4.150 6 C -0.192 4.192 7 H 0.124 0.876 8 C 0.542 3.458 9 O -0.542 6.542 10 N -0.725 5.725 11 C 0.124 3.876 12 C -0.087 4.087 13 C -0.113 4.113 14 C 0.093 3.907 15 N -0.663 5.663 16 C 0.047 3.953 17 C 0.451 3.549 18 O -0.564 6.564 19 N -0.591 5.591 20 C -0.304 4.304 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 C -0.171 4.171 29 C -0.173 4.173 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.401 0.599 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.029 0.971 44 H 0.351 0.649 45 H 0.087 0.913 46 H 0.043 0.957 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.094 0.906 50 H 0.095 0.905 51 H 0.094 0.906 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.646 5.951 -24.748 28.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.135 4.135 4 H 0.136 0.864 5 C -0.187 4.187 6 C -0.213 4.213 7 H 0.142 0.858 8 C 0.328 3.672 9 O -0.420 6.420 10 N -0.376 5.376 11 C 0.001 3.999 12 C -0.125 4.125 13 C -0.114 4.114 14 C -0.036 4.036 15 N -0.296 5.296 16 C -0.085 4.085 17 C 0.237 3.763 18 O -0.446 6.446 19 N -0.231 5.231 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.208 4.208 29 C -0.211 4.211 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.235 0.765 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.047 0.953 44 H 0.170 0.830 45 H 0.105 0.895 46 H 0.061 0.939 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.112 0.888 50 H 0.114 0.886 51 H 0.113 0.887 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.224 5.373 -24.644 28.479 hybrid contribution 0.336 1.483 1.083 1.867 sum -12.888 6.856 -23.561 27.717 Atomic orbital electron populations 1.21741 0.95136 1.01705 1.02146 1.21169 0.96344 0.93563 1.02263 1.22494 0.91366 0.98814 1.00857 0.86414 1.23109 1.02227 1.03059 0.90302 1.22326 0.97967 0.99049 1.02000 0.85817 1.19644 0.82237 0.85516 0.79802 1.90694 1.53982 1.48791 1.48499 1.45934 1.06983 1.28865 1.55770 1.21331 0.94296 0.87459 0.96830 1.21202 0.93715 0.97560 1.00004 1.21292 1.01684 0.93922 0.94522 1.21502 0.99633 0.92560 0.89905 1.60018 1.17820 1.47301 1.04450 1.21711 1.01225 0.96894 0.88714 1.19705 0.85987 0.88169 0.82477 1.90557 1.45201 1.42260 1.66611 1.42215 1.47060 1.28177 1.05632 1.19427 1.27262 1.06623 0.89987 0.86295 1.25042 0.97587 0.97277 0.96312 1.69618 1.41719 1.31986 1.08854 0.86667 0.80846 0.81297 0.80546 1.19578 1.20203 1.19559 1.23044 0.90549 1.03690 1.03496 1.23053 1.01385 0.96148 1.00482 0.92587 0.92568 0.92420 0.91656 0.91233 0.88392 0.87818 0.76493 0.90931 0.91850 0.91806 0.89095 0.90506 0.95302 0.82969 0.89495 0.93882 0.79695 0.91630 0.88794 0.88613 0.88729 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.87 37.16 0.37 -0.56 16 2 C -0.10 -0.64 6.22 -26.73 -0.17 -0.80 16 3 C -0.12 -0.96 5.25 -90.58 -0.48 -1.44 16 4 H 0.12 1.19 7.60 -51.93 -0.39 0.80 16 5 C -0.15 -1.03 9.88 -26.69 -0.26 -1.30 16 6 C -0.19 -1.62 5.91 -91.77 -0.54 -2.16 16 7 H 0.12 0.83 8.14 -51.93 -0.42 0.40 16 8 C 0.54 6.27 7.61 -10.98 -0.08 6.19 16 9 O -0.54 -8.44 16.26 5.57 0.09 -8.35 16 10 N -0.72 -7.04 5.56 -60.30 -0.33 -7.38 16 11 C 0.12 1.31 5.40 -4.05 -0.02 1.29 16 12 C -0.09 -0.83 5.13 -26.73 -0.14 -0.97 16 13 C -0.11 -1.11 1.64 -154.50 -0.25 -1.36 16 14 C 0.09 1.08 5.36 -3.83 -0.02 1.06 16 15 N -0.66 -10.01 5.94 -115.07 -0.68 -10.69 16 16 C 0.05 0.79 6.16 -4.98 -0.03 0.76 16 17 C 0.45 10.27 7.82 -10.98 -0.09 10.19 16 18 O -0.56 -15.11 15.78 5.55 0.09 -15.03 16 19 N -0.59 -14.21 5.09 -10.96 -0.06 -14.27 16 20 C -0.30 -8.67 10.16 -14.93 -0.15 -8.82 16 21 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.91 13.96 55.50 0.77 -25.13 16 24 Si 0.88 19.58 27.74 -169.99 -4.72 14.86 16 25 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.27 -5.48 6.51 56.52 0.37 -5.11 16 28 C -0.17 -1.52 9.94 -26.68 -0.27 -1.79 16 29 C -0.17 -1.43 9.95 -26.68 -0.27 -1.69 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.36 7.88 -51.93 -0.41 -0.05 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.52 8.03 -51.93 -0.42 0.10 16 37 H 0.40 2.86 8.47 -40.82 -0.35 2.52 16 38 H 0.07 0.93 7.27 -51.93 -0.38 0.56 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 41 H 0.09 1.05 8.01 -51.93 -0.42 0.63 16 42 H 0.08 0.91 7.15 -51.93 -0.37 0.53 16 43 H 0.03 0.32 8.09 -51.93 -0.42 -0.10 16 44 H 0.35 5.53 8.38 -39.29 -0.33 5.20 16 45 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.37 7.84 5.76 -40.82 -0.24 7.61 16 48 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 49 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 52 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 429.14 15.07 6.47 6.47 Total: -1.00 -34.51 429.14 -10.05 -44.57 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: -9.19 Total: 15.34 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -2.49 Total: -0.38 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: -0.30 Total: -57.47 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: 0.18 Total: -23.37 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.72 Total: 14.86 kcal Total LS contribution 6.47 Total: 6.47 kcal Total: -34.51 -10.05 -44.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167280220.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.725 kcal (2) G-P(sol) polarization free energy of solvation -34.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds