Wall clock time and date at job start Tue Mar 31 2020 19:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46806 * 2 1 4 4 H 1.08999 * 115.56114 * 29.31572 * 3 2 1 5 5 C 1.53068 * 117.49082 * 243.59886 * 3 2 1 6 6 C 1.53001 * 117.49350 * 174.99791 * 3 2 1 7 7 H 1.08997 * 117.49995 * 359.97438 * 6 3 2 8 8 C 1.50702 * 117.49475 * 214.97939 * 6 3 2 9 9 O 1.21270 * 120.00311 * 0.08721 * 8 6 3 10 10 N 1.34780 * 119.99681 * 180.09131 * 8 6 3 11 11 C 1.46492 * 119.99902 * 179.97438 * 10 8 6 12 12 C 1.52999 * 109.47049 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47053 * 174.72785 * 12 11 10 14 14 C 1.52995 * 115.55288 * 65.35323 * 13 12 11 15 15 N 1.46893 * 109.47347 * 64.03930 * 14 13 12 16 16 C 1.46898 * 111.00342 * 175.87208 * 15 14 13 17 17 C 1.50699 * 109.47252 * 180.02562 * 16 15 14 18 18 O 1.21288 * 120.00022 * 359.97438 * 17 16 15 19 19 N 1.34782 * 119.99867 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99846 * 179.97438 * 19 17 16 21 21 H 1.08001 * 119.99862 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00174 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00439 * 179.97438 * 22 20 19 24 24 Si 1.86808 * 119.99554 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47132 * 90.00054 * 24 22 20 26 26 H 1.48502 * 109.46759 * 209.99668 * 24 22 20 27 27 H 1.48492 * 109.47174 * 329.99383 * 24 22 20 28 28 C 1.53009 * 117.49698 * 211.02365 * 13 12 11 29 29 C 1.53009 * 117.49708 * 279.68199 * 13 12 11 30 30 H 1.08999 * 109.47444 * 59.99944 * 1 2 3 31 31 H 1.09000 * 109.47324 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47153 * 299.99873 * 1 2 3 33 33 H 1.09000 * 109.47153 * 240.00127 * 2 1 3 34 34 H 1.09004 * 109.46756 * 119.99955 * 2 1 3 35 35 H 1.09006 * 117.51272 * 145.04052 * 5 3 2 36 36 H 1.08999 * 117.52056 * 359.97438 * 5 3 2 37 37 H 0.97001 * 119.99987 * 359.97438 * 10 8 6 38 38 H 1.09002 * 109.47170 * 60.00279 * 11 10 8 39 39 H 1.09001 * 109.47260 * 300.00027 * 11 10 8 40 40 H 1.08995 * 109.47484 * 54.72939 * 12 11 10 41 41 H 1.08999 * 109.47584 * 294.72403 * 12 11 10 42 42 H 1.08997 * 109.46958 * 304.03901 * 14 13 12 43 43 H 1.09002 * 109.47406 * 184.03797 * 14 13 12 44 44 H 1.00902 * 111.00334 * 51.91573 * 15 14 13 45 45 H 1.09000 * 109.47601 * 60.00029 * 16 15 14 46 46 H 1.08999 * 109.47125 * 299.99764 * 16 15 14 47 47 H 0.97001 * 120.00213 * 359.72011 * 19 17 16 48 48 H 0.96991 * 120.00077 * 180.02562 * 23 22 20 49 49 H 1.08997 * 117.49608 * 215.00039 * 28 13 12 50 50 H 1.08996 * 117.49966 * 0.02562 * 28 13 12 51 51 H 1.08990 * 117.49944 * 359.97418 * 29 13 12 52 52 H 1.08999 * 117.49867 * 144.97823 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3883 2.1717 0.4814 5 6 2.8447 1.9075 -1.2162 6 6 3.5501 1.6579 0.1183 7 1 4.1802 0.7720 0.1966 8 6 4.0227 2.8621 0.8915 9 8 3.2158 3.6158 1.3928 10 7 5.3423 3.1013 1.0258 11 6 5.8018 4.2721 1.7768 12 6 7.3313 4.3093 1.7778 13 6 7.8096 5.5991 2.4477 14 6 7.4827 5.7298 3.9365 15 7 8.1866 4.6811 4.6864 16 6 7.9744 4.8347 6.1319 17 6 8.7104 3.7440 6.8664 18 8 9.3485 2.9194 6.2468 19 7 8.6587 3.6842 8.2119 20 6 9.3279 2.6915 8.8801 21 1 9.8968 1.9577 8.3284 22 6 9.2751 2.6301 10.2673 23 7 9.9161 1.6784 10.9078 24 14 8.2917 3.8997 11.2216 25 1 6.8978 3.4180 11.3951 26 1 8.9131 4.1076 12.5542 27 1 8.2827 5.1828 10.4742 28 6 9.1277 6.2026 1.9581 29 6 7.7993 6.8775 1.6071 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.7225 2.9427 -1.5350 36 1 3.0111 1.1858 -2.0159 37 1 5.9878 2.4982 0.6250 38 1 5.4396 4.2105 2.8031 39 1 5.4162 5.1780 1.3092 40 1 7.6962 4.2762 0.7513 41 1 7.7154 3.4503 2.3278 42 1 6.4080 5.6224 4.0833 43 1 7.8022 6.7087 4.2941 44 1 9.1707 4.6760 4.4640 45 1 6.9091 4.7666 6.3521 46 1 8.3504 5.8061 6.4530 47 1 8.1511 4.3456 8.7077 48 1 9.8789 1.6353 11.8760 49 1 9.7618 6.6928 2.6968 50 1 9.6537 5.6811 1.1586 51 1 7.4521 6.7997 0.5769 52 1 7.5592 7.8117 2.1148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167280220.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:20 Heat of formation + Delta-G solvation = -62.042540 kcal Electronic energy + Delta-G solvation = -28316.374454 eV Core-core repulsion = 24315.751970 eV Total energy + Delta-G solvation = -4000.622484 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.09100 -40.38725 -39.59336 -38.07359 -36.31139 -35.91517 -35.43605 -33.74889 -32.96997 -31.25396 -29.49615 -26.86737 -26.02537 -24.68481 -24.62973 -23.74233 -22.93016 -21.58736 -21.32866 -21.12121 -20.40432 -19.69474 -18.27210 -17.71820 -17.30194 -17.04086 -16.67521 -16.61013 -16.01500 -15.85165 -15.71698 -15.56170 -15.16739 -15.12061 -14.95733 -14.74937 -14.47526 -14.43350 -13.95357 -13.52849 -13.39450 -13.32763 -13.19081 -13.00843 -12.98095 -12.83573 -12.50280 -12.42440 -12.31942 -12.19988 -12.02855 -11.98405 -11.93287 -11.52965 -11.27376 -11.09472 -11.02720 -10.81484 -10.61548 -10.43587 -10.25886 -10.09474 -9.30593 -8.42541 -6.03181 1.28664 1.34331 1.42724 1.47020 1.94112 2.14120 2.21431 2.60712 2.84863 2.95936 3.13642 3.44437 3.63044 3.76349 3.76802 3.86130 3.88588 4.01865 4.06083 4.14477 4.20445 4.27846 4.36030 4.39472 4.42026 4.48172 4.51501 4.56214 4.61307 4.71859 4.77432 4.82069 4.86164 4.93009 4.99245 5.05986 5.09809 5.15306 5.22291 5.25765 5.28634 5.29441 5.33677 5.45146 5.49849 5.51448 5.89547 6.04360 6.41122 6.54298 6.58633 6.86707 7.23258 7.38437 7.94614 8.75004 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009041 B = 0.002154 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3096.162899 B =12993.069758 C =15247.312402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.128 4.128 4 H 0.091 0.909 5 C -0.129 4.129 6 C -0.198 4.198 7 H 0.146 0.854 8 C 0.534 3.466 9 O -0.590 6.590 10 N -0.715 5.715 11 C 0.130 3.870 12 C -0.075 4.075 13 C -0.129 4.129 14 C 0.097 3.903 15 N -0.678 5.678 16 C 0.061 3.939 17 C 0.450 3.550 18 O -0.611 6.611 19 N -0.592 5.592 20 C -0.328 4.328 21 H 0.056 0.944 22 C -0.016 4.016 23 N -0.933 5.933 24 Si 0.964 3.036 25 H -0.259 1.259 26 H -0.274 1.274 27 H -0.232 1.232 28 C -0.170 4.170 29 C -0.156 4.156 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.132 0.868 37 H 0.415 0.585 38 H 0.045 0.955 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.043 0.957 44 H 0.345 0.655 45 H 0.108 0.892 46 H 0.075 0.925 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.091 0.909 50 H 0.103 0.897 51 H 0.106 0.894 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.902 8.125 -26.136 30.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.129 4.129 3 C -0.146 4.146 4 H 0.109 0.891 5 C -0.167 4.167 6 C -0.219 4.219 7 H 0.163 0.837 8 C 0.322 3.678 9 O -0.471 6.471 10 N -0.366 5.366 11 C 0.007 3.993 12 C -0.113 4.113 13 C -0.130 4.130 14 C -0.032 4.032 15 N -0.310 5.310 16 C -0.072 4.072 17 C 0.237 3.763 18 O -0.496 6.496 19 N -0.234 5.234 20 C -0.457 4.457 21 H 0.074 0.926 22 C -0.214 4.214 23 N -0.574 5.574 24 Si 0.784 3.216 25 H -0.184 1.184 26 H -0.199 1.199 27 H -0.155 1.155 28 C -0.207 4.207 29 C -0.194 4.194 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.150 0.850 37 H 0.251 0.749 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.061 0.939 44 H 0.164 0.836 45 H 0.126 0.874 46 H 0.093 0.907 47 H 0.224 0.776 48 H 0.089 0.911 49 H 0.110 0.890 50 H 0.121 0.879 51 H 0.124 0.876 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.464 7.554 -26.070 30.756 hybrid contribution 0.792 0.738 1.422 1.787 sum -13.672 8.292 -24.648 29.380 Atomic orbital electron populations 1.21747 0.95018 1.02217 1.01799 1.21164 0.96451 0.92407 1.02873 1.22484 0.90898 0.99324 1.01934 0.89060 1.23201 0.99985 1.03405 0.90069 1.22380 0.98319 0.98365 1.02841 0.83675 1.20252 0.82263 0.85908 0.79395 1.90666 1.55192 1.50658 1.50633 1.45908 1.06928 1.28770 1.55028 1.21204 0.94972 0.87762 0.95392 1.21071 0.92587 0.96774 1.00836 1.21249 1.03097 0.94924 0.93723 1.21521 0.98958 0.92010 0.90678 1.60007 1.17739 1.49451 1.03818 1.21621 1.01306 0.95267 0.88967 1.20945 0.84673 0.88536 0.82097 1.90534 1.47003 1.44447 1.67576 1.42052 1.47298 1.27811 1.06224 1.19007 1.28536 1.07481 0.90669 0.92553 1.26109 0.98496 0.99910 0.96918 1.69796 1.43491 1.34494 1.09614 0.85374 0.78700 0.79023 0.78484 1.18357 1.19878 1.15545 1.23093 0.90508 1.03556 1.03560 1.23112 1.00265 0.95303 1.00693 0.92143 0.91575 0.93627 0.89769 0.91804 0.89089 0.84985 0.74861 0.93622 0.91873 0.89720 0.91321 0.90793 0.93915 0.83606 0.87406 0.90711 0.77554 0.91136 0.89029 0.87890 0.87572 0.88128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.87 71.98 0.71 -1.04 16 2 C -0.09 -1.10 6.22 30.60 0.19 -0.91 16 3 C -0.13 -2.05 5.25 -10.77 -0.06 -2.10 16 4 H 0.09 1.96 7.60 -2.39 -0.02 1.94 16 5 C -0.13 -1.56 9.88 30.62 0.30 -1.26 16 6 C -0.20 -3.13 5.91 -11.54 -0.07 -3.20 16 7 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 8 C 0.53 12.36 7.61 87.66 0.67 13.03 16 9 O -0.59 -19.01 16.26 -3.00 -0.05 -19.06 16 10 N -0.72 -13.52 5.56 -463.08 -2.57 -16.09 16 11 C 0.13 2.70 5.40 86.38 0.47 3.17 16 12 C -0.07 -1.35 5.13 30.59 0.16 -1.19 16 13 C -0.13 -2.30 1.64 -52.18 -0.09 -2.38 16 14 C 0.10 2.07 5.36 86.30 0.46 2.54 16 15 N -0.68 -19.75 5.94 -517.96 -3.08 -22.83 16 16 C 0.06 1.90 6.16 85.56 0.53 2.43 16 17 C 0.45 20.54 7.82 87.66 0.69 21.23 16 18 O -0.61 -33.99 15.78 -3.05 -0.05 -34.04 16 19 N -0.59 -28.36 5.09 -306.98 -1.56 -29.92 16 20 C -0.33 -19.41 10.16 84.04 0.85 -18.55 16 21 H 0.06 3.96 7.39 -2.91 -0.02 3.94 16 22 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 23 N -0.93 -56.69 13.96 21.66 0.30 -56.39 16 24 Si 0.96 39.40 27.74 68.60 1.90 41.30 16 25 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 26 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 27 H -0.23 -8.00 6.51 99.48 0.65 -7.35 16 28 C -0.17 -2.66 9.94 30.62 0.30 -2.35 16 29 C -0.16 -2.15 9.95 30.62 0.30 -1.84 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.04 0.62 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.70 7.88 -2.39 -0.02 0.68 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.13 0.86 8.03 -2.39 -0.02 0.84 16 37 H 0.41 5.42 8.47 -92.71 -0.79 4.63 16 38 H 0.05 1.20 7.27 -2.39 -0.02 1.18 16 39 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.08 1.16 8.09 -2.39 -0.02 1.14 16 41 H 0.07 1.57 8.01 -2.39 -0.02 1.55 16 42 H 0.07 1.64 7.15 -2.39 -0.02 1.62 16 43 H 0.04 0.81 8.09 -2.39 -0.02 0.79 16 44 H 0.35 10.71 8.38 -89.69 -0.75 9.96 16 45 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 46 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.39 15.52 5.76 -92.71 -0.53 14.98 16 48 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 49 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 51 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 52 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -81.54 429.14 -0.42 -81.96 By element: Atomic # 1 Polarization: 49.12 SS G_CDS: -1.20 Total: 47.92 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 5.89 Total: 7.14 kcal Atomic # 7 Polarization: -118.32 SS G_CDS: -6.91 Total: -125.23 kcal Atomic # 8 Polarization: -53.00 SS G_CDS: -0.10 Total: -53.10 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 1.90 Total: 41.30 kcal Total: -81.54 -0.42 -81.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167280220.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.918 kcal (2) G-P(sol) polarization free energy of solvation -81.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds