Wall clock time and date at job start Tue Mar 31 2020 19:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47531 * 2 1 4 4 H 1.09005 * 109.99664 * 60.03986 * 3 2 1 5 5 C 1.54320 * 109.88399 * 298.94679 * 3 2 1 6 6 C 1.55155 * 103.10112 * 218.29622 * 5 3 2 7 7 C 1.55385 * 101.36577 * 35.49648 * 6 5 3 8 8 N 1.47023 * 109.88586 * 181.13343 * 3 2 1 9 9 C 1.34772 * 125.64789 * 298.39960 * 8 3 2 10 10 O 1.21347 * 120.00150 * 3.95619 * 9 8 3 11 11 C 1.49457 * 119.99727 * 183.95235 * 9 8 3 12 12 O 1.21346 * 120.00083 * 359.97438 * 11 9 8 13 13 N 1.34772 * 119.99727 * 180.02562 * 11 9 8 14 14 C 1.46503 * 119.99886 * 180.02562 * 13 11 9 15 15 C 1.53000 * 109.47226 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47319 * 185.30932 * 15 14 13 17 17 C 1.53002 * 115.54494 * 294.70157 * 16 15 14 18 18 N 1.46502 * 109.47123 * 298.78435 * 17 16 15 19 19 C 1.36936 * 120.00254 * 184.36425 * 18 17 16 20 20 H 1.08002 * 119.99918 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00140 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00504 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00049 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47212 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47352 * 119.99818 * 23 21 19 26 26 H 1.48503 * 109.47375 * 239.99676 * 23 21 19 27 27 C 1.52989 * 117.50154 * 149.03113 * 16 15 14 28 28 C 1.52997 * 117.50166 * 80.36508 * 16 15 14 29 29 H 1.09001 * 109.47238 * 65.52046 * 1 2 3 30 30 H 1.08997 * 109.47689 * 185.52015 * 1 2 3 31 31 H 1.09005 * 109.47027 * 305.52465 * 1 2 3 32 32 H 1.09006 * 109.47132 * 240.00329 * 2 1 3 33 33 H 1.09003 * 109.46963 * 120.00762 * 2 1 3 34 34 H 1.08994 * 110.72412 * 336.75194 * 5 3 2 35 35 H 1.09009 * 110.71912 * 99.84799 * 5 3 2 36 36 H 1.09006 * 111.00020 * 153.66595 * 6 5 3 37 37 H 1.08996 * 111.00761 * 277.51257 * 6 5 3 38 38 H 1.08998 * 110.34438 * 204.16605 * 7 6 5 39 39 H 1.08997 * 110.44379 * 81.91714 * 7 6 5 40 40 H 0.97005 * 120.00716 * 359.97438 * 13 11 9 41 41 H 1.09002 * 109.47260 * 299.99991 * 14 13 11 42 42 H 1.09001 * 109.46758 * 60.00441 * 14 13 11 43 43 H 1.09007 * 109.47002 * 305.30494 * 15 14 13 44 44 H 1.08995 * 109.47257 * 65.30274 * 15 14 13 45 45 H 1.08997 * 109.47451 * 58.78780 * 17 16 15 46 46 H 1.09001 * 109.47104 * 178.78716 * 17 16 15 47 47 H 0.97005 * 119.99946 * 4.36762 * 18 17 16 48 48 H 0.97002 * 120.00992 * 179.97438 * 22 21 19 49 49 H 1.08997 * 117.50322 * 359.97438 * 27 16 15 50 50 H 1.09004 * 117.50114 * 145.01696 * 27 16 15 51 51 H 1.09004 * 117.50224 * 214.98201 * 28 16 15 52 52 H 1.09000 * 117.49768 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6821 1.9644 0.8875 5 6 1.5529 2.1714 -1.2699 6 6 2.7704 3.0507 -1.6596 7 6 3.9550 2.1278 -1.2603 8 7 3.5100 1.4530 -0.0273 9 6 4.3170 0.9315 0.9177 10 8 3.8404 0.3329 1.8595 11 6 5.7989 1.0904 0.8057 12 8 6.2754 1.6886 -0.1364 13 7 6.6058 0.5684 1.7505 14 6 8.0584 0.7247 1.6410 15 6 8.7358 0.0446 2.8324 16 6 10.2402 0.3200 2.7894 17 6 10.9884 -0.2876 1.6011 18 7 10.8605 -1.7466 1.6379 19 6 11.5255 -2.5155 0.7205 20 1 12.1447 -2.0465 -0.0299 21 6 11.4039 -3.8978 0.7550 22 7 10.6498 -4.4695 1.6696 23 14 12.3117 -4.9468 -0.4960 24 1 13.0863 -4.0687 -1.4094 25 1 13.2383 -5.8681 0.2096 26 1 11.3318 -5.7376 -1.2833 27 6 10.9821 0.4009 4.1249 28 6 10.7259 1.6731 3.3129 29 1 -0.3634 0.4258 -0.9353 30 1 -0.3634 -1.0228 0.0989 31 1 -0.3633 0.5972 0.8364 32 1 1.8934 -0.5138 -0.8901 33 1 1.8933 -0.5140 0.8899 34 1 1.3241 1.4572 -2.0608 35 1 0.6841 2.7917 -1.0491 36 1 2.7759 3.2581 -2.7297 37 1 2.7843 3.9761 -1.0839 38 1 4.8488 2.7209 -1.0667 39 1 4.1486 1.3961 -2.0445 40 1 6.2250 0.0899 2.5034 41 1 8.4046 0.2646 0.7154 42 1 8.3104 1.7851 1.6360 43 1 8.3207 0.4388 3.7601 44 1 8.5616 -1.0303 2.7845 45 1 10.5632 0.0912 0.6718 46 1 12.0420 -0.0138 1.6567 47 1 10.3046 -2.1679 2.3120 48 1 10.5644 -5.4355 1.6936 49 1 10.3985 0.2583 5.0343 50 1 12.0035 0.0216 4.1570 51 1 11.5789 2.1302 2.8112 52 1 9.9737 2.3672 3.6877 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167662479.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:25 Heat of formation + Delta-G solvation = -39.691286 kcal Electronic energy + Delta-G solvation = -29526.083284 eV Core-core repulsion = 25526.430023 eV Total energy + Delta-G solvation = -3999.653261 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.97075 -39.25717 -38.24406 -37.72650 -35.04902 -33.91641 -33.73071 -31.85409 -30.81226 -30.13696 -28.16890 -26.18250 -25.63542 -23.93738 -22.89071 -22.70012 -22.16703 -21.75050 -20.92003 -19.83781 -18.54725 -17.64836 -17.28329 -17.05191 -16.38840 -15.90669 -15.57023 -15.18088 -14.96605 -14.73997 -14.47172 -14.21850 -14.08126 -13.85895 -13.70779 -13.33703 -13.26633 -13.10362 -12.69868 -12.66716 -12.38618 -12.35594 -12.01181 -11.94302 -11.85301 -11.55077 -11.38395 -11.25763 -11.20143 -11.04373 -10.95505 -10.83921 -10.73904 -10.55768 -10.10792 -9.90444 -9.71467 -9.49866 -9.30570 -9.16676 -8.93817 -8.82837 -6.88320 -5.74306 -3.02209 1.38883 2.17742 3.17360 3.38272 3.44831 3.50596 3.52705 4.05057 4.14677 4.21169 4.43183 4.45887 4.62890 4.79227 4.85750 4.95721 4.97827 5.06031 5.06595 5.15462 5.15739 5.30108 5.33418 5.39635 5.49670 5.53343 5.58665 5.59926 5.65454 5.70422 5.74494 5.75145 5.80881 5.84192 5.89299 5.93629 6.10457 6.14422 6.16495 6.21326 6.34478 6.43183 6.46382 6.53605 6.76620 6.82806 6.97837 7.21924 7.64902 7.72806 7.97912 8.44670 9.56368 10.14548 10.49889 11.48605 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011268 B = 0.002460 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.260325 B =11378.065762 C =12603.373816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.136 3.864 4 H 0.079 0.921 5 C -0.128 4.128 6 C -0.136 4.136 7 C 0.091 3.909 8 N -0.590 5.590 9 C 0.522 3.478 10 O -0.520 6.520 11 C 0.507 3.493 12 O -0.519 6.519 13 N -0.693 5.693 14 C 0.122 3.878 15 C -0.090 4.090 16 C -0.119 4.119 17 C 0.187 3.813 18 N -0.727 5.727 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.163 4.163 28 C -0.178 4.178 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.107 0.893 39 H 0.073 0.927 40 H 0.411 0.589 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.086 0.914 45 H 0.022 0.978 46 H 0.023 0.977 47 H 0.384 0.616 48 H 0.254 0.746 49 H 0.089 0.911 50 H 0.096 0.904 51 H 0.092 0.908 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.821 17.162 -1.720 25.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C 0.034 3.966 4 H 0.097 0.903 5 C -0.166 4.166 6 C -0.174 4.174 7 C -0.031 4.031 8 N -0.324 5.324 9 C 0.305 3.695 10 O -0.396 6.396 11 C 0.287 3.713 12 O -0.395 6.395 13 N -0.345 5.345 14 C 0.000 4.000 15 C -0.128 4.128 16 C -0.120 4.120 17 C 0.059 3.941 18 N -0.372 5.372 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.200 4.200 28 C -0.216 4.216 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.125 0.875 39 H 0.091 0.909 40 H 0.247 0.753 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.104 0.896 45 H 0.039 0.961 46 H 0.040 0.960 47 H 0.218 0.782 48 H 0.064 0.936 49 H 0.107 0.893 50 H 0.114 0.886 51 H 0.111 0.889 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.538 17.185 -1.969 25.355 hybrid contribution 0.183 -1.126 -0.097 1.145 sum -18.355 16.059 -2.067 24.476 Atomic orbital electron populations 1.21718 0.94943 1.02062 1.01748 1.21926 0.96272 0.95871 1.03626 1.21775 0.78808 0.96966 0.99082 0.90303 1.22750 0.98297 0.98860 0.96702 1.22931 0.94074 0.98160 1.02265 1.22827 0.98818 0.95838 0.85585 1.48338 1.06605 1.56037 1.21415 1.19917 0.87519 0.79781 0.82244 1.90748 1.76558 1.40211 1.32053 1.19921 0.87308 0.80637 0.83420 1.90697 1.76466 1.40863 1.31522 1.45848 1.07709 1.55027 1.25939 1.21537 0.76660 1.01158 1.00648 1.21232 0.92733 1.02283 0.96524 1.21544 0.93853 0.99584 0.97046 1.20197 0.95549 0.85858 0.92466 1.42302 1.57863 0.99229 1.37785 1.19267 1.21492 0.88486 1.07564 0.91214 1.24716 1.00581 0.96594 0.99108 1.69662 1.43049 1.09393 1.36045 0.86141 0.78974 0.80544 0.80691 1.20590 1.21923 1.21916 1.22951 1.01855 1.00813 0.94417 1.23004 1.03231 0.90716 1.04600 0.92582 0.92379 0.92598 0.91666 0.90187 0.90155 0.89897 0.89521 0.90534 0.87524 0.90899 0.75267 0.89880 0.91106 0.91800 0.89569 0.96066 0.95956 0.78158 0.93622 0.89289 0.88557 0.88933 0.89278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.59 37.16 0.36 -0.65 16 2 C -0.14 -1.29 5.34 -26.73 -0.14 -1.43 16 3 C 0.14 1.22 2.99 -66.96 -0.20 1.02 16 4 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 5 C -0.13 -0.78 5.48 -24.90 -0.14 -0.92 16 6 C -0.14 -0.87 7.12 -24.33 -0.17 -1.04 16 7 C 0.09 0.88 6.22 -2.27 -0.01 0.86 16 8 N -0.59 -6.65 3.07 -163.22 -0.50 -7.15 16 9 C 0.52 7.18 7.73 -11.58 -0.09 7.09 16 10 O -0.52 -7.95 15.38 5.50 0.08 -7.87 16 11 C 0.51 7.37 7.86 -11.58 -0.09 7.28 16 12 O -0.52 -8.26 13.72 5.50 0.08 -8.18 16 13 N -0.69 -9.55 5.55 -60.73 -0.34 -9.89 16 14 C 0.12 1.78 5.40 -4.04 -0.02 1.75 16 15 C -0.09 -1.31 5.09 -26.73 -0.14 -1.45 16 16 C -0.12 -1.88 1.61 -154.51 -0.25 -2.13 16 17 C 0.19 3.74 5.89 -4.04 -0.02 3.72 16 18 N -0.73 -18.20 5.48 -59.91 -0.33 -18.53 16 19 C -0.24 -6.64 9.99 -15.06 -0.15 -6.80 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 23 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 27 C -0.16 -2.38 9.94 -26.70 -0.27 -2.64 16 28 C -0.18 -2.31 9.96 -26.69 -0.27 -2.58 16 29 H 0.06 0.31 7.31 -51.93 -0.38 -0.07 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.95 6.75 -51.93 -0.35 0.60 16 34 H 0.08 0.45 7.62 -51.93 -0.40 0.06 16 35 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 36 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.11 1.18 5.93 -51.93 -0.31 0.87 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.41 5.21 7.95 -40.82 -0.32 4.89 16 41 H 0.08 1.43 7.33 -51.93 -0.38 1.05 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.06 0.79 8.09 -51.92 -0.42 0.37 16 44 H 0.09 1.46 7.24 -51.93 -0.38 1.09 16 45 H 0.02 0.44 7.27 -51.93 -0.38 0.06 16 46 H 0.02 0.46 8.11 -51.93 -0.42 0.04 16 47 H 0.38 10.09 6.78 -40.82 -0.28 9.81 16 48 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 49 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 50 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 51 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 52 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 415.19 15.07 6.26 6.26 Total: -1.00 -32.39 415.19 -9.80 -42.19 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -9.05 Total: 11.50 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -1.70 Total: 1.58 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: -0.44 Total: -63.10 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: 0.16 Total: -16.05 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.39 -9.80 -42.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167662479.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.500 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds