Wall clock time and date at job start Tue Mar 31 2020 19:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53000 * 109.47454 * 2 1 4 4 H 1.09000 * 109.87870 * 306.58582 * 3 2 1 5 5 C 1.54323 * 109.88037 * 67.76301 * 3 2 1 6 6 C 1.55154 * 102.94599 * 141.61272 * 5 3 2 7 7 C 1.55131 * 101.48293 * 324.33008 * 6 5 3 8 8 N 1.47024 * 109.88545 * 185.56557 * 3 2 1 9 9 C 1.34779 * 125.64356 * 61.61105 * 8 3 2 10 10 O 1.21343 * 120.00239 * 5.29499 * 9 8 3 11 11 C 1.49452 * 119.99649 * 185.30422 * 9 8 3 12 12 O 1.21343 * 120.00112 * 359.97438 * 11 9 8 13 13 N 1.34777 * 119.99979 * 180.02562 * 11 9 8 14 14 C 1.46501 * 120.00369 * 179.97438 * 13 11 9 15 15 C 1.52996 * 109.47124 * 179.97438 * 14 13 11 16 16 C 1.53005 * 109.46819 * 174.97678 * 15 14 13 17 17 C 1.52994 * 115.55382 * 65.11372 * 16 15 14 18 18 N 1.46503 * 109.47158 * 65.05579 * 17 16 15 19 19 C 1.36934 * 120.00102 * 175.01992 * 18 17 16 20 20 H 1.07997 * 119.99905 * 359.97438 * 19 18 17 21 21 C 1.38817 * 119.99999 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99905 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99914 * 179.72344 * 21 19 18 24 24 H 1.48502 * 109.47466 * 59.99840 * 23 21 19 25 25 H 1.48500 * 109.47158 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47250 * 299.99834 * 23 21 19 27 27 C 1.53002 * 117.49886 * 210.78614 * 16 15 14 28 28 C 1.53009 * 117.49659 * 279.44296 * 16 15 14 29 29 H 1.09000 * 109.47579 * 184.96805 * 1 2 3 30 30 H 1.09006 * 109.46869 * 304.96623 * 1 2 3 31 31 H 1.09002 * 109.47354 * 64.96411 * 1 2 3 32 32 H 1.09005 * 109.47409 * 240.00196 * 2 1 3 33 33 H 1.09004 * 109.47552 * 120.00376 * 2 1 3 34 34 H 1.09000 * 110.71891 * 259.97543 * 5 3 2 35 35 H 1.09001 * 110.72365 * 23.24668 * 5 3 2 36 36 H 1.09000 * 111.00611 * 82.56763 * 6 5 3 37 37 H 1.09000 * 111.00729 * 206.38450 * 6 5 3 38 38 H 1.08996 * 110.49613 * 278.44974 * 7 6 5 39 39 H 1.09005 * 110.34092 * 156.06326 * 7 6 5 40 40 H 0.97001 * 119.99974 * 359.97438 * 13 11 9 41 41 H 1.09009 * 109.46699 * 59.99398 * 14 13 11 42 42 H 1.08994 * 109.46917 * 299.99690 * 14 13 11 43 43 H 1.08999 * 109.47190 * 54.97933 * 15 14 13 44 44 H 1.09002 * 109.47714 * 294.97284 * 15 14 13 45 45 H 1.09004 * 109.47175 * 305.05843 * 17 16 15 46 46 H 1.08999 * 109.47711 * 185.06111 * 17 16 15 47 47 H 0.96996 * 119.99632 * 355.02299 * 18 17 16 48 48 H 0.96998 * 119.99872 * 179.97438 * 22 21 19 49 49 H 1.09001 * 117.49937 * 215.00379 * 27 16 15 50 50 H 1.09001 * 117.49361 * 0.02562 * 27 16 15 51 51 H 1.08998 * 117.49498 * 359.97438 * 28 16 15 52 52 H 1.09001 * 117.49490 * 144.97576 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5875 1.9956 -0.8231 5 6 1.6971 2.1203 1.3433 6 6 2.9547 2.9832 1.6282 7 6 4.0837 2.0774 1.0701 8 7 3.5040 1.4552 -0.1341 9 6 4.2010 0.9727 -1.1819 10 8 3.6159 0.5624 -2.1626 11 6 5.6945 0.9427 -1.1358 12 8 6.2796 1.3532 -0.1552 13 7 6.3915 0.4607 -2.1838 14 6 7.8555 0.4318 -2.1389 15 6 8.3942 -0.1582 -3.4438 16 6 9.9219 -0.0733 -3.4493 17 6 10.6336 -0.9169 -2.3899 18 7 10.3962 -2.3378 -2.6566 19 6 11.0201 -3.2907 -1.8964 20 1 11.6876 -2.9948 -1.1006 21 6 10.7956 -4.6370 -2.1495 22 7 9.9833 -4.9976 -3.1203 23 14 11.6527 -5.9369 -1.1176 24 1 11.2684 -5.7707 0.3072 25 1 11.2469 -7.2868 -1.5850 26 1 13.1237 -5.7868 -1.2542 27 6 10.6153 0.0926 -4.8031 28 6 10.5535 1.2687 -3.8252 29 1 -0.3634 -1.0238 0.0890 30 1 -0.3633 0.5890 0.8422 31 1 -0.3634 0.4349 -0.9311 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.8125 2.7493 1.2432 35 1 1.5553 1.3753 2.1262 36 1 2.9082 3.9307 1.0914 37 1 3.0810 3.1486 2.6981 38 1 4.3552 1.3134 1.7986 39 1 4.9547 2.6770 0.8055 40 1 5.9238 0.1329 -2.9678 41 1 8.1812 -0.1839 -1.3004 42 1 8.2353 1.4458 -2.0142 43 1 7.9960 0.4041 -4.2884 44 1 8.0880 -1.2011 -3.5248 45 1 10.2467 -0.6629 -1.4030 46 1 11.7042 -0.7149 -2.4234 47 1 9.7971 -2.6035 -3.3716 48 1 9.8267 -5.9383 -3.2974 49 1 11.5785 -0.3993 -4.9389 50 1 9.9830 0.1418 -5.6896 51 1 9.8807 2.0909 -4.0689 52 1 11.4759 1.5506 -3.3174 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167662480.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:27 Heat of formation + Delta-G solvation = -61.854801 kcal Electronic energy + Delta-G solvation = -29495.944928 eV Core-core repulsion = 25495.330584 eV Total energy + Delta-G solvation = -4000.614343 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.98862 -40.29724 -39.47506 -38.73598 -36.27388 -35.80395 -34.47824 -32.78792 -32.62657 -31.39419 -28.87320 -27.84526 -26.81192 -24.88301 -24.63595 -23.74952 -23.10865 -22.77082 -21.83980 -20.78084 -19.89640 -19.06681 -18.65385 -18.23658 -17.47240 -17.00513 -16.76207 -16.55833 -16.18483 -15.88965 -15.72807 -15.39228 -15.23881 -14.96785 -14.77120 -14.64132 -14.38252 -14.20600 -14.02747 -13.89687 -13.46056 -13.20271 -13.05745 -13.02613 -12.80196 -12.76769 -12.64259 -12.56132 -12.28319 -12.22789 -12.15821 -12.01268 -11.93188 -11.82024 -11.62029 -11.47800 -11.14022 -10.89215 -10.68820 -10.53068 -10.33742 -9.87445 -8.97308 -7.94996 -5.22497 0.26500 1.17070 1.45114 1.48087 1.54120 2.04852 2.38631 2.54006 2.89593 3.21334 3.38072 3.57003 3.64707 3.77135 3.83803 3.83951 3.98155 4.03363 4.15117 4.19585 4.19734 4.29900 4.40144 4.44711 4.47133 4.54102 4.57071 4.70583 4.81909 4.84881 4.89312 4.90696 4.95437 4.96521 5.07831 5.09363 5.10386 5.12709 5.15943 5.20738 5.23006 5.23510 5.32807 5.34545 5.36627 5.41805 5.48014 5.95400 6.17451 6.27154 6.58100 6.85764 7.34174 8.11451 8.36011 9.28201 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011309 B = 0.002441 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.385740 B =11469.417113 C =12732.473932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.136 4.136 3 C 0.128 3.872 4 H 0.078 0.922 5 C -0.118 4.118 6 C -0.126 4.126 7 C 0.092 3.908 8 N -0.587 5.587 9 C 0.518 3.482 10 O -0.544 6.544 11 C 0.503 3.497 12 O -0.536 6.536 13 N -0.689 5.689 14 C 0.133 3.867 15 C -0.078 4.078 16 C -0.140 4.140 17 C 0.186 3.814 18 N -0.737 5.737 19 C -0.245 4.245 20 H 0.072 0.928 21 C -0.074 4.074 22 N -0.967 5.967 23 Si 0.971 3.029 24 H -0.280 1.280 25 H -0.294 1.294 26 H -0.277 1.277 27 C -0.166 4.166 28 C -0.145 4.145 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.417 0.583 41 H 0.050 0.950 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.055 0.945 45 H 0.016 0.984 46 H 0.020 0.980 47 H 0.375 0.625 48 H 0.251 0.749 49 H 0.079 0.921 50 H 0.106 0.894 51 H 0.117 0.883 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.027 20.814 6.424 28.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.175 4.175 3 C 0.026 3.974 4 H 0.096 0.904 5 C -0.156 4.156 6 C -0.164 4.164 7 C -0.029 4.029 8 N -0.320 5.320 9 C 0.300 3.700 10 O -0.422 6.422 11 C 0.284 3.716 12 O -0.414 6.414 13 N -0.342 5.342 14 C 0.010 3.990 15 C -0.116 4.116 16 C -0.141 4.141 17 C 0.060 3.940 18 N -0.379 5.379 19 C -0.377 4.377 20 H 0.090 0.910 21 C -0.267 4.267 22 N -0.618 5.618 23 Si 0.800 3.200 24 H -0.206 1.206 25 H -0.221 1.221 26 H -0.204 1.204 27 C -0.203 4.203 28 C -0.183 4.183 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.127 0.873 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.254 0.746 41 H 0.069 0.931 42 H 0.103 0.897 43 H 0.112 0.888 44 H 0.074 0.926 45 H 0.034 0.966 46 H 0.038 0.962 47 H 0.208 0.792 48 H 0.059 0.941 49 H 0.098 0.902 50 H 0.124 0.876 51 H 0.135 0.865 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.735 20.809 6.680 28.146 hybrid contribution 0.438 -1.741 -0.329 1.825 sum -17.297 19.069 6.351 26.517 Atomic orbital electron populations 1.21675 0.92801 1.02589 1.02812 1.21882 0.98221 0.95780 1.01583 1.22037 0.77773 0.97185 1.00422 0.90356 1.22785 0.99242 0.99459 0.94081 1.22902 0.92532 0.97726 1.03195 1.22787 0.98072 0.96710 0.85353 1.48550 1.08535 1.56595 1.18323 1.19793 0.87848 0.79322 0.82995 1.90735 1.71252 1.47893 1.32364 1.20176 0.88410 0.79357 0.83705 1.90715 1.71413 1.46925 1.32312 1.45821 1.08075 1.61249 1.19034 1.21365 0.77095 1.01814 0.98747 1.21103 0.92604 1.01202 0.96658 1.21378 0.93616 1.00793 0.98304 1.20279 0.95884 0.83050 0.94809 1.42447 1.54959 1.00640 1.39875 1.19581 1.19976 0.87584 1.10583 0.91033 1.25520 1.01496 0.99102 1.00538 1.69803 1.41894 1.15728 1.34380 0.85253 0.78310 0.78226 0.78237 1.20631 1.22065 1.20357 1.22979 1.01889 1.02395 0.93039 1.23111 1.02741 0.90646 1.01758 0.92321 0.90284 0.92598 0.93893 0.91829 0.87317 0.89213 0.89814 0.87308 0.91173 0.89842 0.74627 0.93122 0.89724 0.88775 0.92595 0.96596 0.96231 0.79232 0.94058 0.90243 0.87578 0.86464 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.83 71.98 0.71 -1.05 16 2 C -0.14 -2.47 5.41 30.59 0.17 -2.30 16 3 C 0.13 2.13 2.86 45.34 0.13 2.26 16 4 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 5 C -0.12 -1.06 5.55 31.78 0.18 -0.88 16 6 C -0.13 -1.22 7.10 32.06 0.23 -0.99 16 7 C 0.09 1.67 5.90 86.93 0.51 2.18 16 8 N -0.59 -13.02 3.06 -789.18 -2.42 -15.44 16 9 C 0.52 14.49 7.63 87.27 0.67 15.15 16 10 O -0.54 -17.17 15.66 -3.23 -0.05 -17.22 16 11 C 0.50 14.86 7.85 87.27 0.69 15.54 16 12 O -0.54 -17.33 13.91 -3.23 -0.04 -17.37 16 13 N -0.69 -19.14 5.55 -464.41 -2.58 -21.71 16 14 C 0.13 3.82 5.40 86.38 0.47 4.29 16 15 C -0.08 -2.23 5.12 30.59 0.16 -2.07 16 16 C -0.14 -4.33 1.56 -52.18 -0.08 -4.41 16 17 C 0.19 7.58 5.93 86.38 0.51 8.09 16 18 N -0.74 -37.96 5.52 -343.45 -1.89 -39.86 16 19 C -0.25 -14.03 9.99 84.04 0.84 -13.19 16 20 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 21 C -0.07 -4.35 5.50 84.86 0.47 -3.88 16 22 N -0.97 -60.11 13.06 21.65 0.28 -59.83 16 23 Si 0.97 47.19 29.55 68.60 2.03 49.22 16 24 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 26 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 27 C -0.17 -4.64 9.94 30.62 0.30 -4.33 16 28 C -0.15 -3.41 9.94 30.62 0.30 -3.10 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.64 7.36 -2.38 -0.02 0.62 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.04 1.06 6.88 -2.38 -0.02 1.05 16 33 H 0.06 1.15 8.01 -2.39 -0.02 1.13 16 34 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.09 0.69 7.76 -2.39 -0.02 0.68 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.08 1.75 6.48 -2.38 -0.02 1.74 16 40 H 0.42 10.65 7.94 -92.71 -0.74 9.91 16 41 H 0.05 1.79 7.23 -2.38 -0.02 1.77 16 42 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.09 2.13 8.09 -2.39 -0.02 2.11 16 44 H 0.06 1.94 7.49 -2.39 -0.02 1.92 16 45 H 0.02 0.68 7.10 -2.38 -0.02 0.66 16 46 H 0.02 0.81 8.09 -2.39 -0.02 0.79 16 47 H 0.38 20.49 7.02 -92.71 -0.65 19.84 16 48 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 49 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 50 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 51 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 52 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -72.39 416.45 1.09 -71.29 By element: Atomic # 1 Polarization: 40.09 SS G_CDS: -0.47 Total: 39.62 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 6.24 Total: 11.30 kcal Atomic # 7 Polarization: -130.24 SS G_CDS: -6.61 Total: -136.84 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.10 Total: -34.59 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -72.39 1.09 -71.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167662480.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.440 kcal (2) G-P(sol) polarization free energy of solvation -72.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds