Wall clock time and date at job start Tue Mar 31 2020 20:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 120.00282 * 2 1 4 4 H 1.08997 * 109.47029 * 0.02562 * 3 2 1 5 5 C 1.53004 * 109.47162 * 240.00234 * 3 2 1 6 6 C 1.52998 * 109.46972 * 64.99778 * 5 3 2 7 7 C 1.53001 * 109.47206 * 120.00152 * 3 2 1 8 8 C 1.50702 * 109.47003 * 294.99780 * 7 3 2 9 9 O 1.21280 * 119.99715 * 0.02562 * 8 7 3 10 10 N 1.34774 * 119.99829 * 180.02562 * 8 7 3 11 11 C 1.47422 * 125.65008 * 359.97420 * 10 8 7 12 12 C 1.54911 * 104.83544 * 204.16514 * 11 10 8 13 13 C 1.55158 * 101.58008 * 322.99418 * 12 11 10 14 14 H 1.08998 * 110.71870 * 276.95977 * 13 12 11 15 15 N 1.46905 * 110.71973 * 153.86309 * 13 12 11 16 16 C 1.46901 * 110.99870 * 86.45364 * 15 13 12 17 17 C 1.50697 * 109.46943 * 180.02562 * 16 15 13 18 18 O 1.21292 * 120.00024 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99767 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99759 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00171 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00074 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99768 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00310 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47100 * 90.00351 * 24 22 20 26 26 H 1.48501 * 109.47251 * 210.00371 * 24 22 20 27 27 H 1.48503 * 109.46881 * 330.00485 * 24 22 20 28 28 C 1.47026 * 125.64777 * 180.02562 * 10 8 7 29 29 H 1.08998 * 109.87996 * 298.32268 * 28 10 8 30 30 C 1.53001 * 109.88121 * 59.48878 * 28 10 8 31 31 H 1.08001 * 120.00237 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.99620 * 359.97438 * 1 2 3 33 33 H 1.08005 * 119.99851 * 180.02562 * 2 1 3 34 34 H 1.08994 * 109.47027 * 185.00026 * 5 3 2 35 35 H 1.08995 * 109.46607 * 304.99796 * 5 3 2 36 36 H 1.09003 * 109.46690 * 180.02562 * 6 5 3 37 37 H 1.09001 * 109.47347 * 299.99634 * 6 5 3 38 38 H 1.08998 * 109.47395 * 60.00005 * 6 5 3 39 39 H 1.09004 * 109.47007 * 175.00461 * 7 3 2 40 40 H 1.08991 * 109.47181 * 55.00170 * 7 3 2 41 41 H 1.09001 * 110.36490 * 85.32627 * 11 10 8 42 42 H 1.09002 * 110.36556 * 323.00514 * 11 10 8 43 43 H 1.08998 * 111.00578 * 204.91635 * 12 11 10 44 44 H 1.09004 * 110.99961 * 81.06605 * 12 11 10 45 45 H 1.00901 * 110.99869 * 322.50075 * 15 13 12 46 46 H 1.09004 * 109.47031 * 299.99620 * 16 15 13 47 47 H 1.08995 * 109.47111 * 59.99900 * 16 15 13 48 48 H 0.96997 * 120.00713 * 359.97438 * 19 17 16 49 49 H 0.96999 * 119.99907 * 179.97438 * 23 22 20 50 50 H 1.09000 * 109.46856 * 177.81235 * 30 28 10 51 51 H 1.09005 * 109.46832 * 297.80472 * 30 28 10 52 52 H 1.08997 * 109.47503 * 57.80414 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3553 2.1335 0.0005 5 6 2.9432 1.3861 -1.2493 6 6 2.0564 1.4307 -2.4953 7 6 2.9432 1.3861 1.2492 8 6 2.0698 1.4300 2.4766 9 8 0.8628 1.3991 2.3633 10 7 2.6302 1.5037 3.7001 11 6 4.0767 1.5476 3.9814 12 6 4.2160 1.0101 5.4276 13 6 2.9519 1.6037 6.1036 14 1 3.1309 2.6308 6.4214 15 7 2.5335 0.7748 7.2420 16 6 3.2420 1.1673 8.4675 17 6 2.7883 0.2967 9.6108 18 8 1.9562 -0.5656 9.4232 19 7 3.3064 0.4769 10.8419 20 6 2.8932 -0.3148 11.8821 21 1 2.1523 -1.0826 11.7151 22 6 3.4277 -0.1294 13.1512 23 7 4.3289 0.8052 13.3545 24 14 2.8642 -1.2077 14.5687 25 1 3.7310 -2.4107 14.6505 26 1 2.9565 -0.4438 15.8388 27 1 1.4571 -1.6258 14.3436 28 6 1.9002 1.5526 4.9754 29 1 1.2750 2.4447 5.0106 30 6 1.0343 0.3004 5.1275 31 1 -0.5400 -0.9353 0.0004 32 1 -0.5399 0.9354 0.0004 33 1 1.8500 -0.9354 -0.0004 34 1 3.5540 2.2877 -1.2056 35 1 3.5905 0.5104 -1.2951 36 1 2.6831 1.4879 -3.3853 37 1 1.4455 0.5290 -2.5390 38 1 1.4089 2.3063 -2.4494 39 1 3.5541 2.2878 1.2056 40 1 3.5906 0.5105 1.2951 41 1 4.4441 2.5720 3.9204 42 1 4.6182 0.9074 3.2849 43 1 5.1241 1.3863 5.8985 44 1 4.1923 -0.0796 5.4433 45 1 2.6685 -0.2054 7.0445 46 1 4.3153 1.0448 8.3218 47 1 3.0231 2.2104 8.6956 48 1 3.9716 1.1667 10.9920 49 1 4.7017 0.9349 14.2405 50 1 0.5264 0.3249 6.0917 51 1 0.2943 0.2711 4.3277 52 1 1.6652 -0.5867 5.0715 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179384788.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:43 Heat of formation + Delta-G solvation = -79.167718 kcal Electronic energy + Delta-G solvation = -29333.569919 eV Core-core repulsion = 25332.204831 eV Total energy + Delta-G solvation = -4001.365088 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.40557 -40.16524 -39.22911 -37.43478 -36.15246 -35.50358 -33.27084 -32.65279 -32.52494 -31.77325 -30.60296 -28.16938 -26.51117 -25.99791 -25.05440 -23.66107 -22.52073 -21.34587 -21.12113 -20.44424 -19.92000 -19.77652 -18.21759 -17.63401 -17.13745 -16.85363 -16.53164 -16.31621 -16.16423 -15.77902 -15.53426 -15.29685 -15.16319 -14.86075 -14.56214 -14.31965 -14.10448 -13.98956 -13.82830 -13.62490 -13.48408 -13.36780 -13.08461 -12.98473 -12.95181 -12.83293 -12.66784 -12.46359 -12.40414 -12.14940 -12.12419 -12.03546 -11.80807 -11.69555 -11.62256 -11.49564 -11.34577 -10.74665 -10.32929 -10.00631 -9.99822 -9.57481 -9.25716 -8.45936 -5.94153 1.38158 1.42280 1.54476 1.54628 1.77801 1.99834 2.07651 2.30280 2.93976 3.21749 3.41605 3.52070 3.69936 3.85122 3.87170 3.94882 4.08209 4.18511 4.33962 4.36218 4.38952 4.40929 4.46963 4.48278 4.53365 4.55173 4.62866 4.66338 4.71262 4.75972 4.80264 4.86282 5.02072 5.02493 5.07463 5.08196 5.11007 5.14587 5.20384 5.39541 5.40955 5.42080 5.47685 5.47988 5.84261 5.91110 6.05707 6.12532 6.37214 6.61807 6.65449 7.14306 7.30470 7.58428 8.14254 8.71259 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034115 B = 0.001792 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.559308 B =15617.883981 C =16104.371848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.147 4.147 3 C -0.044 4.044 4 H 0.060 0.940 5 C -0.109 4.109 6 C -0.153 4.153 7 C -0.121 4.121 8 C 0.517 3.483 9 O -0.571 6.571 10 N -0.619 5.619 11 C 0.103 3.897 12 C -0.161 4.161 13 C 0.085 3.915 14 H 0.109 0.891 15 N -0.671 5.671 16 C 0.068 3.932 17 C 0.436 3.564 18 O -0.625 6.625 19 N -0.573 5.573 20 C -0.334 4.334 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.918 5.918 24 Si 0.991 3.009 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.276 1.276 28 C 0.146 3.854 29 H 0.061 0.939 30 C -0.139 4.139 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.119 0.881 40 H 0.112 0.888 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.106 0.894 44 H 0.069 0.931 45 H 0.346 0.654 46 H 0.075 0.925 47 H 0.106 0.894 48 H 0.397 0.603 49 H 0.277 0.723 50 H 0.063 0.937 51 H 0.041 0.959 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.501 5.408 -27.948 29.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.165 4.165 3 C -0.062 4.062 4 H 0.078 0.922 5 C -0.147 4.147 6 C -0.210 4.210 7 C -0.160 4.160 8 C 0.307 3.693 9 O -0.449 6.449 10 N -0.354 5.354 11 C -0.019 4.019 12 C -0.201 4.201 13 C -0.025 4.025 14 H 0.127 0.873 15 N -0.303 5.303 16 C -0.064 4.064 17 C 0.224 3.776 18 O -0.512 6.512 19 N -0.210 5.210 20 C -0.464 4.464 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.559 5.559 24 Si 0.815 3.185 25 H -0.196 1.196 26 H -0.195 1.195 27 H -0.201 1.201 28 C 0.042 3.958 29 H 0.079 0.921 30 C -0.197 4.197 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.128 0.872 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.137 0.863 40 H 0.130 0.870 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.124 0.876 44 H 0.088 0.912 45 H 0.167 0.833 46 H 0.093 0.907 47 H 0.124 0.876 48 H 0.231 0.769 49 H 0.087 0.913 50 H 0.082 0.918 51 H 0.060 0.940 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.822 5.266 -27.882 28.781 hybrid contribution 0.360 -0.684 1.103 1.347 sum 5.181 4.582 -26.778 27.657 Atomic orbital electron populations 1.23675 0.96637 1.00770 1.00979 1.22848 0.95762 0.98135 0.99720 1.20162 0.96597 0.95538 0.93949 0.92160 1.21507 0.97494 1.03214 0.92444 1.21770 0.99940 1.01409 0.97911 1.21740 0.98099 1.06293 0.89914 1.21064 0.88852 0.75208 0.84175 1.90704 1.16726 1.51036 1.86484 1.48760 1.08705 1.73035 1.04851 1.22479 0.79968 1.02942 0.96494 1.23549 0.99429 1.01169 0.95931 1.22636 0.92334 0.98652 0.88912 0.87313 1.59998 1.59983 1.08690 1.01584 1.21541 0.97328 0.99292 0.88248 1.20961 0.84618 0.87188 0.84821 1.90505 1.37306 1.38869 1.84510 1.41911 1.38677 1.33219 1.07192 1.19645 1.23065 1.15196 0.88492 0.90528 1.25985 0.96159 0.98468 1.00482 1.69663 1.28705 1.32898 1.24669 0.84963 0.78437 0.78005 0.77140 1.19586 1.19548 1.20070 1.21296 0.93395 0.97939 0.83156 0.92075 1.21755 0.99538 0.97028 1.01388 0.89136 0.90072 0.87193 0.90269 0.90692 0.91748 0.93384 0.93451 0.86254 0.86968 0.88834 0.88231 0.87567 0.91212 0.83343 0.90732 0.87629 0.76873 0.91322 0.91810 0.93951 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.91 13.22 67.78 0.90 -3.02 16 2 C -0.15 -2.63 6.76 25.65 0.17 -2.46 16 3 C -0.04 -0.63 1.82 -11.54 -0.02 -0.65 16 4 H 0.06 1.14 7.60 -2.39 -0.02 1.12 16 5 C -0.11 -1.03 5.39 30.59 0.16 -0.86 16 6 C -0.15 -1.67 9.73 71.98 0.70 -0.97 16 7 C -0.12 -1.47 4.17 29.85 0.12 -1.34 16 8 C 0.52 10.95 7.38 87.66 0.65 11.60 16 9 O -0.57 -17.02 13.07 -3.03 -0.04 -17.06 16 10 N -0.62 -11.77 3.08 -788.05 -2.43 -14.20 16 11 C 0.10 1.14 6.69 86.86 0.58 1.72 16 12 C -0.16 -2.32 6.63 31.99 0.21 -2.11 16 13 C 0.09 1.77 3.11 46.10 0.14 1.91 16 14 H 0.11 1.97 7.89 -2.39 -0.02 1.95 16 15 N -0.67 -19.63 4.49 -489.44 -2.20 -21.83 16 16 C 0.07 2.13 6.02 85.56 0.52 2.64 16 17 C 0.44 20.17 7.82 87.66 0.69 20.85 16 18 O -0.63 -34.35 15.78 -3.07 -0.05 -34.40 16 19 N -0.57 -28.72 5.29 -306.99 -1.62 -30.34 16 20 C -0.33 -18.86 9.68 84.04 0.81 -18.05 16 21 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 22 C -0.01 -0.58 5.50 84.93 0.47 -0.12 16 23 N -0.92 -48.80 13.05 21.66 0.28 -48.52 16 24 Si 0.99 42.77 29.55 68.60 2.03 44.80 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 27 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 28 C 0.15 3.51 3.48 45.34 0.16 3.67 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 C -0.14 -4.05 8.19 71.98 0.59 -3.46 16 31 H 0.09 1.82 8.06 -2.91 -0.02 1.79 16 32 H 0.08 1.92 7.83 -2.91 -0.02 1.90 16 33 H 0.11 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.05 0.61 7.38 -2.39 -0.02 0.60 16 38 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.11 0.94 7.85 -2.39 -0.02 0.92 16 41 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.10 0.67 7.48 -2.39 -0.02 0.65 16 43 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.07 1.17 7.81 -2.39 -0.02 1.16 16 45 H 0.35 10.99 7.25 -89.69 -0.65 10.34 16 46 H 0.07 1.92 8.13 -2.39 -0.02 1.91 16 47 H 0.11 2.96 8.08 -2.39 -0.02 2.94 16 48 H 0.40 18.72 7.90 -92.71 -0.73 17.99 16 49 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 50 H 0.06 2.12 7.40 -2.39 -0.02 2.10 16 51 H 0.04 1.37 6.77 -2.38 -0.02 1.35 16 52 H 0.05 1.32 7.88 -2.39 -0.02 1.30 16 Total: -1.00 -73.10 415.20 2.34 -70.76 By element: Atomic # 1 Polarization: 41.90 SS G_CDS: -0.48 Total: 41.42 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 6.85 Total: 9.36 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -5.97 Total: -114.89 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -0.09 Total: -51.46 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -73.10 2.34 -70.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179384788.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.406 kcal (2) G-P(sol) polarization free energy of solvation -73.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds