Wall clock time and date at job start Tue Mar 31 2020 20:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.53002 * 109.47278 * 295.00291 * 3 2 1 6 6 C 1.52998 * 109.47705 * 174.99884 * 3 2 1 7 7 C 1.50699 * 109.47757 * 185.00168 * 6 3 2 8 8 O 1.21280 * 119.99701 * 0.02562 * 7 6 3 9 9 N 1.34771 * 120.00419 * 180.02562 * 7 6 3 10 10 C 1.46730 * 125.24037 * 0.02562 * 9 7 6 11 11 C 1.54039 * 106.53267 * 160.82363 * 10 9 7 12 12 C 1.53883 * 103.86209 * 28.03488 * 11 10 9 13 13 H 1.09004 * 111.74914 * 95.31338 * 12 11 10 14 14 C 1.53561 * 110.01605 * 220.03058 * 12 11 10 15 15 N 1.47906 * 106.90535 * 118.33929 * 14 12 11 16 16 C 1.46908 * 111.00108 * 211.76137 * 15 14 12 17 17 C 1.50703 * 109.47021 * 169.99541 * 16 15 14 18 18 O 1.21290 * 119.99957 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99667 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99795 * 180.02562 * 19 17 16 21 21 H 1.08004 * 119.99933 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00021 * 180.02562 * 20 19 17 23 23 N 1.31416 * 120.00233 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99990 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47370 * 89.99624 * 24 22 20 26 26 H 1.48500 * 109.47015 * 209.99991 * 24 22 20 27 27 H 1.48496 * 109.46942 * 329.99683 * 24 22 20 28 28 C 1.48331 * 105.71724 * 332.21208 * 15 14 12 29 29 C 1.46775 * 125.24570 * 179.72136 * 9 7 6 30 30 H 1.08999 * 112.20073 * 58.42700 * 29 9 7 31 31 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 32 32 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 33 33 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 35 35 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 36 36 H 1.09004 * 109.47334 * 179.97438 * 5 3 2 37 37 H 1.09000 * 109.46593 * 299.99796 * 5 3 2 38 38 H 1.08998 * 109.46891 * 59.99794 * 5 3 2 39 39 H 1.08998 * 109.47140 * 305.00658 * 6 3 2 40 40 H 1.09001 * 109.46898 * 64.99635 * 6 3 2 41 41 H 1.08994 * 110.04529 * 280.08955 * 10 9 7 42 42 H 1.09002 * 110.04410 * 41.50827 * 10 9 7 43 43 H 1.08994 * 110.55257 * 146.63181 * 11 10 9 44 44 H 1.09011 * 110.54952 * 269.44293 * 11 10 9 45 45 H 1.08996 * 109.97588 * 237.70067 * 14 12 11 46 46 H 1.08999 * 109.97286 * 358.97800 * 14 12 11 47 47 H 1.09000 * 109.47167 * 289.99866 * 16 15 14 48 48 H 1.09004 * 109.47018 * 49.99796 * 16 15 14 49 49 H 0.96996 * 120.00133 * 0.02562 * 19 17 16 50 50 H 0.96997 * 120.00180 * 180.02562 * 23 22 20 51 51 H 1.09008 * 110.53097 * 157.23334 * 28 15 14 52 52 H 1.09001 * 110.53015 * 279.85120 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 1.6353 2.1265 -1.3073 6 6 3.5648 1.4443 0.1257 7 6 4.0571 2.8632 0.2493 8 8 3.2661 3.7825 0.2384 9 7 5.3762 3.1107 0.3719 10 6 6.4302 2.0903 0.3980 11 6 7.7483 2.8128 0.0610 12 6 7.5159 4.2522 0.5531 13 1 7.9091 4.4039 1.5583 14 6 8.1124 5.2525 -0.4477 15 7 6.9922 6.0762 -0.9520 16 6 7.2291 6.4936 -2.3405 17 6 5.9748 7.1146 -2.8993 18 8 4.9815 7.2014 -2.2087 19 7 5.9573 7.5745 -4.1660 20 6 4.8164 8.1399 -4.6742 21 1 3.9318 8.2172 -4.0593 22 6 4.7980 8.6135 -5.9804 23 7 3.7046 9.1560 -6.4674 24 14 6.3277 8.4792 -7.0441 25 1 6.3100 7.1870 -7.7757 26 1 6.3529 9.5995 -8.0186 27 1 7.5362 8.5444 -6.1837 28 6 5.7863 5.2182 -0.8533 29 6 5.9804 4.4428 0.4937 30 1 5.5994 4.9906 1.3556 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 1.9983 3.1543 -1.3071 37 1 2.0699 1.5874 -2.1491 38 1 0.5490 2.1253 -1.3968 39 1 3.8571 0.8799 1.0113 40 1 4.0030 0.9835 -0.7596 41 1 6.4925 1.6427 1.3898 42 1 6.2241 1.3212 -0.3464 43 1 8.5821 2.3561 0.5942 44 1 7.9275 2.8002 -1.0142 45 1 8.8453 5.8863 0.0514 46 1 8.5825 4.7179 -1.2731 47 1 8.0388 7.2229 -2.3676 48 1 7.5024 5.6249 -2.9395 49 1 6.7518 7.5054 -4.7181 50 1 3.6917 9.4863 -7.3793 51 1 4.8845 5.8293 -0.8133 52 1 5.7403 4.5253 -1.6935 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187691308.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:44 Heat of formation + Delta-G solvation = -90.513804 kcal Electronic energy + Delta-G solvation = -30609.674807 eV Core-core repulsion = 26607.817715 eV Total energy + Delta-G solvation = -4001.857091 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.83880 -40.56923 -39.61637 -37.31770 -36.84764 -35.95968 -33.83793 -33.20152 -31.81165 -31.16358 -29.29622 -28.13220 -28.00467 -25.92522 -25.10927 -23.70015 -22.51776 -21.48126 -21.27581 -20.75676 -20.14903 -20.00462 -18.27427 -17.73867 -17.20926 -16.91461 -16.82785 -16.55289 -15.99850 -15.88013 -15.71529 -15.32168 -15.24902 -15.00261 -14.67537 -14.44775 -14.26155 -14.16239 -13.98254 -13.76209 -13.53007 -13.39778 -13.10318 -13.00179 -12.94502 -12.83493 -12.64664 -12.49140 -12.44580 -12.22914 -12.00867 -11.96204 -11.88519 -11.75666 -11.60107 -11.55530 -11.43193 -11.42731 -10.71706 -10.34547 -10.27226 -9.69328 -9.31838 -8.45328 -6.07236 1.26135 1.32105 1.41760 1.64690 1.89151 1.96856 2.19658 2.65032 3.09730 3.18302 3.29205 3.55476 3.66392 3.75026 3.80465 3.93540 4.06775 4.11491 4.16142 4.21579 4.30638 4.37359 4.42520 4.44599 4.46094 4.53395 4.60135 4.64120 4.66343 4.74176 4.78669 4.79605 4.85984 4.91795 5.04718 5.07911 5.09664 5.12929 5.20191 5.22853 5.28920 5.31261 5.42511 5.48193 5.49269 5.55087 5.79791 5.88251 6.05785 6.54524 6.56547 6.83780 7.23131 7.33248 7.92543 8.72837 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009873 B = 0.003283 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.318917 B = 8527.452483 C =10642.251181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.109 4.109 3 C -0.075 4.075 4 H 0.055 0.945 5 C -0.154 4.154 6 C -0.119 4.119 7 C 0.508 3.492 8 O -0.582 6.582 9 N -0.616 5.616 10 C 0.093 3.907 11 C -0.118 4.118 12 C -0.093 4.093 13 H 0.121 0.879 14 C 0.041 3.959 15 N -0.518 5.518 16 C 0.048 3.952 17 C 0.442 3.558 18 O -0.608 6.608 19 N -0.588 5.588 20 C -0.331 4.331 21 H 0.048 0.952 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.969 3.031 25 H -0.256 1.256 26 H -0.272 1.272 27 H -0.229 1.229 28 C 0.052 3.948 29 C 0.133 3.867 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.030 0.970 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.126 0.874 40 H 0.111 0.889 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.124 0.876 44 H 0.072 0.928 45 H 0.102 0.898 46 H 0.069 0.931 47 H 0.127 0.873 48 H 0.080 0.920 49 H 0.390 0.610 50 H 0.280 0.720 51 H 0.053 0.947 52 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.334 -24.683 13.664 31.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.147 4.147 3 C -0.094 4.094 4 H 0.074 0.926 5 C -0.211 4.211 6 C -0.159 4.159 7 C 0.299 3.701 8 O -0.462 6.462 9 N -0.350 5.350 10 C -0.028 4.028 11 C -0.156 4.156 12 C -0.112 4.112 13 H 0.139 0.861 14 C -0.086 4.086 15 N -0.243 5.243 16 C -0.083 4.083 17 C 0.230 3.770 18 O -0.492 6.492 19 N -0.230 5.230 20 C -0.460 4.460 21 H 0.066 0.934 22 C -0.215 4.215 23 N -0.576 5.576 24 Si 0.788 3.212 25 H -0.180 1.180 26 H -0.197 1.197 27 H -0.152 1.152 28 C -0.077 4.077 29 C 0.028 3.972 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.049 0.951 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.144 0.856 40 H 0.129 0.871 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.142 0.858 44 H 0.091 0.909 45 H 0.120 0.880 46 H 0.087 0.913 47 H 0.145 0.855 48 H 0.098 0.902 49 H 0.226 0.774 50 H 0.090 0.910 51 H 0.071 0.929 52 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 13.012 -23.595 14.250 30.481 hybrid contribution -0.387 0.471 -1.605 1.716 sum 12.625 -23.125 12.645 29.224 Atomic orbital electron populations 1.21840 0.96057 1.02098 1.01456 1.21527 0.95924 0.93950 1.03267 1.20910 0.93573 0.97291 0.97610 0.92620 1.21957 1.01286 1.00187 0.97693 1.21781 0.96812 0.91079 1.06207 1.21344 0.80622 0.93000 0.75126 1.90744 1.55307 1.48766 1.51357 1.48515 1.06132 1.07940 1.72366 1.22393 0.85853 0.90823 1.03711 1.22613 0.97713 0.92810 1.02420 1.22610 0.90855 0.96244 1.01534 0.86130 1.23149 0.93109 0.94485 0.97865 1.64491 1.03602 1.37829 1.18394 1.22101 0.95000 1.01386 0.89837 1.21009 0.91143 0.82920 0.81927 1.90559 1.38450 1.60756 1.59479 1.41986 1.12889 1.55644 1.12527 1.18965 0.91576 1.37537 0.97917 0.93384 1.26193 1.02063 0.95427 0.97803 1.69819 1.30128 1.40261 1.17354 0.85315 0.77864 0.79429 0.78569 1.18012 1.19699 1.15210 1.23554 0.94829 0.93609 0.95746 1.22564 0.94768 0.84118 0.95763 0.91176 0.93477 0.93293 0.91301 0.89984 0.90844 0.95082 0.92455 0.92596 0.85649 0.87112 0.88665 0.89001 0.85787 0.90907 0.87954 0.91264 0.85505 0.90221 0.77388 0.91037 0.92868 0.96365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.67 71.98 0.70 -1.78 16 2 C -0.11 -1.59 5.40 30.59 0.17 -1.43 16 3 C -0.07 -1.63 2.04 -10.80 -0.02 -1.65 16 4 H 0.06 1.46 7.95 -2.39 -0.02 1.44 16 5 C -0.15 -4.36 8.69 71.98 0.63 -3.73 16 6 C -0.12 -2.19 4.20 29.85 0.13 -2.07 16 7 C 0.51 14.84 7.37 87.66 0.65 15.49 16 8 O -0.58 -24.33 14.01 -3.03 -0.04 -24.37 16 9 N -0.62 -14.83 2.97 -784.16 -2.33 -17.16 16 10 C 0.09 1.11 6.59 86.69 0.57 1.68 16 11 C -0.12 -1.17 6.47 31.24 0.20 -0.97 16 12 C -0.09 -1.55 3.81 -9.68 -0.04 -1.59 16 13 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 14 C 0.04 0.80 6.27 86.30 0.54 1.34 16 15 N -0.52 -17.01 5.28 -885.34 -4.67 -21.68 16 16 C 0.05 1.60 5.52 85.56 0.47 2.07 16 17 C 0.44 21.69 7.49 87.66 0.66 22.34 16 18 O -0.61 -36.96 13.11 -3.06 -0.04 -37.00 16 19 N -0.59 -29.50 5.09 -306.98 -1.56 -31.06 16 20 C -0.33 -20.48 10.16 84.04 0.85 -19.63 16 21 H 0.05 3.58 7.39 -2.91 -0.02 3.55 16 22 C -0.02 -0.95 5.50 84.92 0.47 -0.48 16 23 N -0.94 -58.54 13.96 21.66 0.30 -58.24 16 24 Si 0.97 39.93 27.74 68.60 1.90 41.83 16 25 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 27 H -0.23 -7.89 6.52 99.48 0.65 -7.24 16 28 C 0.05 1.99 4.52 87.30 0.39 2.38 16 29 C 0.13 3.76 3.94 46.84 0.18 3.95 16 30 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.05 0.85 6.57 -2.39 -0.02 0.83 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.03 1.17 5.95 -2.38 -0.01 1.16 16 37 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.06 1.50 6.56 -2.39 -0.02 1.49 16 39 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.11 1.60 7.85 -2.39 -0.02 1.58 16 41 H 0.10 0.66 8.14 -2.39 -0.02 0.65 16 42 H 0.09 0.79 7.57 -2.39 -0.02 0.78 16 43 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.07 0.82 7.35 -2.38 -0.02 0.80 16 45 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.07 1.08 6.68 -2.39 -0.02 1.07 16 47 H 0.13 3.40 8.14 -2.39 -0.02 3.38 16 48 H 0.08 2.18 7.81 -2.39 -0.02 2.16 16 49 H 0.39 16.00 5.76 -92.71 -0.53 15.47 16 50 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 51 H 0.05 2.81 5.99 -2.38 -0.01 2.79 16 52 H 0.02 0.73 7.95 -2.39 -0.02 0.72 16 Total: -1.00 -94.08 397.92 0.41 -93.67 By element: Atomic # 1 Polarization: 37.78 SS G_CDS: 0.32 Total: 38.09 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: 6.54 Total: 15.92 kcal Atomic # 7 Polarization: -119.88 SS G_CDS: -8.27 Total: -128.14 kcal Atomic # 8 Polarization: -61.29 SS G_CDS: -0.08 Total: -61.37 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 1.90 Total: 41.83 kcal Total: -94.08 0.41 -93.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187691308.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.157 kcal (2) G-P(sol) polarization free energy of solvation -94.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds