Wall clock time and date at job start Tue Mar 31 2020 20:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50692 * 119.99761 * 2 1 4 4 H 1.08996 * 109.47388 * 0.02562 * 3 2 1 5 5 C 1.53002 * 109.46891 * 120.00479 * 3 2 1 6 6 C 1.53007 * 109.47087 * 294.02078 * 5 3 2 7 7 C 1.52999 * 109.47481 * 239.99804 * 3 2 1 8 8 C 1.50707 * 109.46751 * 65.60724 * 7 3 2 9 9 O 1.21281 * 119.99623 * 6.08173 * 8 7 3 10 10 N 1.34778 * 119.99962 * 186.07742 * 8 7 3 11 11 C 1.47020 * 125.64477 * 0.04271 * 10 8 7 12 12 C 1.54374 * 107.28662 * 178.87311 * 11 10 8 13 13 C 1.55165 * 102.92019 * 337.85962 * 12 11 10 14 14 H 1.08997 * 111.00478 * 277.36412 * 13 12 11 15 15 N 1.46899 * 111.00490 * 153.54520 * 13 12 11 16 16 C 1.46899 * 110.99936 * 70.47533 * 15 13 12 17 17 C 1.46901 * 110.99771 * 194.42762 * 15 13 12 18 18 C 1.50702 * 109.46622 * 170.00092 * 17 15 13 19 19 O 1.21291 * 120.00273 * 359.97438 * 18 17 15 20 20 N 1.34780 * 119.99630 * 180.02562 * 18 17 15 21 21 C 1.37100 * 119.99732 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00138 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99570 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00446 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99536 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47081 * 60.00395 * 25 23 21 27 27 H 1.48498 * 109.47098 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47293 * 300.00134 * 25 23 21 29 29 C 1.47415 * 125.64731 * 180.02562 * 10 8 7 30 30 H 1.07996 * 120.00182 * 0.02562 * 1 2 3 31 31 H 1.08005 * 120.00211 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.99898 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.47517 * 54.02204 * 5 3 2 34 34 H 1.08999 * 109.47520 * 174.02471 * 5 3 2 35 35 H 1.08993 * 109.47379 * 185.18366 * 6 5 3 36 36 H 1.09000 * 109.46827 * 305.18810 * 6 5 3 37 37 H 1.09001 * 109.46868 * 65.17836 * 6 5 3 38 38 H 1.08995 * 109.47499 * 305.61063 * 7 3 2 39 39 H 1.08996 * 109.47352 * 185.60486 * 7 3 2 40 40 H 1.08999 * 109.88752 * 298.32120 * 11 10 8 41 41 H 1.09001 * 109.88312 * 59.49151 * 11 10 8 42 42 H 1.09000 * 110.75860 * 219.50110 * 12 11 10 43 43 H 1.08996 * 110.70937 * 96.20083 * 12 11 10 44 44 H 1.08994 * 109.47050 * 179.04720 * 16 15 13 45 45 H 1.09002 * 109.46778 * 59.05061 * 16 15 13 46 46 H 1.08999 * 109.47255 * 299.05331 * 16 15 13 47 47 H 1.08997 * 109.47452 * 289.99817 * 17 15 13 48 48 H 1.09003 * 109.47120 * 50.00834 * 17 15 13 49 49 H 0.96997 * 120.00474 * 0.02562 * 20 18 17 50 50 H 0.96998 * 119.99971 * 180.02562 * 24 23 21 51 51 H 1.09000 * 110.37136 * 85.32690 * 29 10 8 52 52 H 1.08997 * 110.46142 * 323.04836 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3551 2.1335 0.0005 5 6 2.9431 1.3860 1.2492 6 6 2.0561 1.4551 2.4940 7 6 2.9431 1.3862 -1.2492 8 6 2.0694 1.4451 -2.4758 9 8 0.8656 1.5356 -2.3590 10 7 2.6259 1.3973 -3.7024 11 6 4.0641 1.2877 -3.9871 12 6 4.2255 1.2391 -5.5216 13 6 2.8316 0.7555 -6.0020 14 1 2.7505 -0.3295 -5.9361 15 7 2.5553 1.2195 -7.3681 16 6 3.4009 0.5184 -8.3434 17 6 1.1322 1.0657 -7.6985 18 6 0.8395 1.7697 -8.9984 19 8 1.7288 2.3435 -9.5910 20 7 -0.4107 1.7626 -9.5020 21 6 -0.6768 2.4026 -10.6849 22 1 0.1152 2.9128 -11.2129 23 6 -1.9656 2.3947 -11.2042 24 7 -2.9292 1.7735 -10.5620 25 14 -2.3284 3.2674 -12.8156 26 1 -1.5022 2.6734 -13.8972 27 1 -3.7669 3.1114 -13.1500 28 1 -2.0046 4.7103 -12.6810 29 6 1.8932 1.4460 -4.9806 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5401 -0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 3.5783 0.5020 1.3043 34 1 3.5665 2.2787 1.1974 35 1 2.6787 1.6053 3.3759 36 1 1.3574 2.2861 2.3966 37 1 1.5001 0.5231 2.5961 38 1 3.5829 0.5054 -1.3009 39 1 3.5617 2.2823 -1.2004 40 1 4.5886 2.1550 -3.5862 41 1 4.4611 0.3743 -3.5441 42 1 4.9999 0.5267 -5.8062 43 1 4.4473 2.2302 -5.9174 44 1 3.1641 0.8688 -9.3479 45 1 3.2163 -0.5540 -8.2797 46 1 4.4499 0.7200 -8.1261 47 1 0.8945 0.0066 -7.7974 48 1 0.5257 1.5018 -6.9046 49 1 -1.1221 1.3047 -9.0275 50 1 -3.8287 1.7678 -10.9248 51 1 1.7088 2.4797 -5.2732 52 1 0.9524 0.9013 -4.9015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191911079.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:30 Heat of formation + Delta-G solvation = -49.458048 kcal Electronic energy + Delta-G solvation = -29452.551363 eV Core-core repulsion = 25452.474583 eV Total energy + Delta-G solvation = -4000.076780 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.37899 -38.90957 -37.88103 -36.72147 -35.41987 -33.81326 -32.00002 -31.43929 -31.21902 -30.38596 -28.85033 -27.84349 -25.41393 -24.79890 -23.53456 -22.79404 -21.89567 -20.31654 -19.94275 -19.33335 -18.93513 -17.81414 -17.24850 -16.82529 -15.88513 -15.81642 -15.37835 -15.03200 -14.70855 -14.62403 -14.39989 -14.33232 -14.18447 -13.79441 -13.64463 -13.42850 -13.35343 -12.90404 -12.89212 -12.61687 -12.37044 -12.17339 -12.04755 -11.83398 -11.62018 -11.50319 -11.46060 -11.38915 -11.23593 -11.08026 -11.04908 -10.91983 -10.76404 -10.72786 -10.42811 -10.19749 -9.93916 -9.45361 -9.31940 -8.73269 -8.46774 -7.98192 -7.88933 -6.39709 -3.80722 2.27696 2.58540 2.79796 3.21222 3.27047 3.31155 3.90286 3.94324 4.18466 4.24014 4.46040 4.50692 4.51120 4.61442 4.84549 4.92787 4.97926 5.06363 5.09368 5.15287 5.17106 5.19950 5.22214 5.28259 5.33906 5.43839 5.55785 5.61264 5.62280 5.66918 5.67461 5.70425 5.79776 5.82779 5.88970 5.90933 5.93694 5.94478 6.03730 6.07291 6.17181 6.29142 6.51772 6.58408 6.77511 7.19234 7.32956 7.42637 7.56635 8.07534 8.10109 8.63285 9.19500 9.56043 10.07612 10.77868 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016435 B = 0.002128 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.263644 B =13155.651040 C =14410.364595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.157 4.157 3 C -0.046 4.046 4 H 0.083 0.917 5 C -0.115 4.115 6 C -0.151 4.151 7 C -0.128 4.128 8 C 0.526 3.474 9 O -0.530 6.530 10 N -0.621 5.621 11 C 0.103 3.897 12 C -0.121 4.121 13 C 0.069 3.931 14 H 0.054 0.946 15 N -0.506 5.506 16 C 0.024 3.976 17 C 0.041 3.959 18 C 0.444 3.556 19 O -0.578 6.578 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 C 0.111 3.889 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.014 0.986 46 H 0.061 0.939 47 H 0.048 0.952 48 H 0.090 0.910 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.081 0.919 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.928 -5.180 22.493 26.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C -0.065 4.065 4 H 0.102 0.898 5 C -0.153 4.153 6 C -0.208 4.208 7 C -0.168 4.168 8 C 0.315 3.685 9 O -0.406 6.406 10 N -0.356 5.356 11 C -0.020 4.020 12 C -0.160 4.160 13 C -0.041 4.041 14 H 0.072 0.928 15 N -0.231 5.231 16 C -0.124 4.124 17 C -0.091 4.091 18 C 0.230 3.770 19 O -0.463 6.463 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.542 5.542 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.012 4.012 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.110 0.890 44 H 0.116 0.884 45 H 0.033 0.967 46 H 0.080 0.920 47 H 0.066 0.934 48 H 0.108 0.892 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.100 0.900 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 13.735 -4.258 22.163 26.419 hybrid contribution -0.858 -0.861 -0.592 1.352 sum 12.877 -5.118 21.570 25.638 Atomic orbital electron populations 1.23762 0.95964 1.01517 0.98767 1.22645 0.96005 0.97054 1.01767 1.20191 0.96654 0.97215 0.92414 0.89825 1.21537 0.97833 1.01902 0.94018 1.21755 0.99804 1.02173 0.97085 1.21690 0.98571 1.04153 0.92406 1.20341 0.88812 0.76186 0.83179 1.90728 1.14902 1.49106 1.85873 1.48479 1.07977 1.73538 1.05618 1.22059 0.81736 1.01398 0.96843 1.22684 0.96814 1.03669 0.92800 1.22806 0.95166 0.96893 0.89251 0.92789 1.61637 1.04543 1.56821 1.00050 1.22533 0.96680 0.94452 0.98712 1.21947 0.89365 0.99207 0.98542 1.19675 0.83863 0.86183 0.87310 1.90479 1.45240 1.48371 1.62161 1.41864 1.08076 1.48200 1.21827 1.19643 0.95199 1.29884 0.98178 0.87944 1.25270 0.95264 0.97687 0.99744 1.69606 1.01910 1.42968 1.39737 0.85917 0.77120 0.79757 0.81407 1.19946 1.21003 1.19885 1.22283 0.95275 1.01995 0.81618 0.88460 0.89139 0.88126 0.91870 0.91818 0.92925 0.92702 0.92477 0.89158 0.88740 0.91168 0.91524 0.90155 0.89007 0.88361 0.96716 0.92017 0.93367 0.89222 0.77472 0.91808 0.90049 0.90390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 13.40 29.01 0.39 -1.30 16 2 C -0.16 -1.46 7.00 -36.03 -0.25 -1.72 16 3 C -0.05 -0.39 1.80 -91.77 -0.17 -0.55 16 4 H 0.08 0.86 7.49 -51.93 -0.39 0.47 16 5 C -0.12 -0.73 5.38 -26.73 -0.14 -0.87 16 6 C -0.15 -0.97 9.65 37.16 0.36 -0.61 16 7 C -0.13 -1.02 4.36 -27.88 -0.12 -1.15 16 8 C 0.53 6.34 7.53 -10.98 -0.08 6.26 16 9 O -0.53 -8.36 14.70 5.56 0.08 -8.28 16 10 N -0.62 -7.06 3.33 -170.48 -0.57 -7.63 16 11 C 0.10 0.84 6.47 -3.04 -0.02 0.82 16 12 C -0.12 -1.16 5.81 -24.87 -0.14 -1.30 16 13 C 0.07 0.85 2.72 -65.55 -0.18 0.68 16 14 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 15 N -0.51 -8.11 4.40 -233.73 -1.03 -9.14 16 16 C 0.02 0.37 9.08 60.06 0.55 0.91 16 17 C 0.04 0.73 5.26 -4.97 -0.03 0.70 16 18 C 0.44 10.45 7.47 -10.98 -0.08 10.37 16 19 O -0.58 -15.34 13.92 5.55 0.08 -15.26 16 20 N -0.56 -14.37 5.29 -10.96 -0.06 -14.42 16 21 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.77 13.05 55.50 0.72 -24.05 16 25 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 29 C 0.11 1.48 4.95 -2.52 -0.01 1.47 16 30 H 0.10 1.09 7.83 -52.49 -0.41 0.68 16 31 H 0.09 0.85 8.06 -52.48 -0.42 0.43 16 32 H 0.10 0.84 8.06 -52.48 -0.42 0.42 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.39 7.58 -51.93 -0.39 0.00 16 38 H 0.09 0.57 8.12 -51.93 -0.42 0.15 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.10 1.87 5.81 -51.93 -0.30 1.57 16 45 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 46 H 0.06 0.80 7.55 -51.93 -0.39 0.41 16 47 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 48 H 0.09 1.52 6.36 -51.93 -0.33 1.19 16 49 H 0.39 9.66 7.90 -40.82 -0.32 9.33 16 50 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 51 H 0.08 1.22 8.06 -51.93 -0.42 0.80 16 52 H 0.08 1.12 7.72 -51.93 -0.40 0.72 16 LS Contribution 415.30 15.07 6.26 6.26 Total: -1.00 -32.65 415.30 -8.92 -41.57 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -9.21 Total: 9.09 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -0.18 Total: 5.70 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.93 Total: -55.24 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: 0.16 Total: -23.55 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.65 -8.92 -41.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191911079.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.891 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds