Wall clock time and date at job start Tue Mar 31 2020 20:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50692 * 119.99761 * 2 1 4 4 H 1.08996 * 109.47388 * 0.02562 * 3 2 1 5 5 C 1.53002 * 109.46891 * 120.00479 * 3 2 1 6 6 C 1.53007 * 109.47087 * 294.02078 * 5 3 2 7 7 C 1.52999 * 109.47481 * 239.99804 * 3 2 1 8 8 C 1.50707 * 109.46751 * 65.60724 * 7 3 2 9 9 O 1.21281 * 119.99623 * 6.08173 * 8 7 3 10 10 N 1.34778 * 119.99962 * 186.07742 * 8 7 3 11 11 C 1.47020 * 125.64477 * 0.04271 * 10 8 7 12 12 C 1.54374 * 107.28662 * 178.87311 * 11 10 8 13 13 C 1.55165 * 102.92019 * 337.85962 * 12 11 10 14 14 H 1.08997 * 111.00478 * 277.36412 * 13 12 11 15 15 N 1.46899 * 111.00490 * 153.54520 * 13 12 11 16 16 C 1.46899 * 110.99936 * 70.47533 * 15 13 12 17 17 C 1.46901 * 110.99771 * 194.42762 * 15 13 12 18 18 C 1.50702 * 109.46622 * 170.00092 * 17 15 13 19 19 O 1.21291 * 120.00273 * 359.97438 * 18 17 15 20 20 N 1.34780 * 119.99630 * 180.02562 * 18 17 15 21 21 C 1.37100 * 119.99732 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00138 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99570 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00446 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99536 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47081 * 60.00395 * 25 23 21 27 27 H 1.48498 * 109.47098 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47293 * 300.00134 * 25 23 21 29 29 C 1.47415 * 125.64731 * 180.02562 * 10 8 7 30 30 H 1.07996 * 120.00182 * 0.02562 * 1 2 3 31 31 H 1.08005 * 120.00211 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.99898 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.47517 * 54.02204 * 5 3 2 34 34 H 1.08999 * 109.47520 * 174.02471 * 5 3 2 35 35 H 1.08993 * 109.47379 * 185.18366 * 6 5 3 36 36 H 1.09000 * 109.46827 * 305.18810 * 6 5 3 37 37 H 1.09001 * 109.46868 * 65.17836 * 6 5 3 38 38 H 1.08995 * 109.47499 * 305.61063 * 7 3 2 39 39 H 1.08996 * 109.47352 * 185.60486 * 7 3 2 40 40 H 1.08999 * 109.88752 * 298.32120 * 11 10 8 41 41 H 1.09001 * 109.88312 * 59.49151 * 11 10 8 42 42 H 1.09000 * 110.75860 * 219.50110 * 12 11 10 43 43 H 1.08996 * 110.70937 * 96.20083 * 12 11 10 44 44 H 1.08994 * 109.47050 * 179.04720 * 16 15 13 45 45 H 1.09002 * 109.46778 * 59.05061 * 16 15 13 46 46 H 1.08999 * 109.47255 * 299.05331 * 16 15 13 47 47 H 1.08997 * 109.47452 * 289.99817 * 17 15 13 48 48 H 1.09003 * 109.47120 * 50.00834 * 17 15 13 49 49 H 0.96997 * 120.00474 * 0.02562 * 20 18 17 50 50 H 0.96998 * 119.99971 * 180.02562 * 24 23 21 51 51 H 1.09000 * 110.37136 * 85.32690 * 29 10 8 52 52 H 1.08997 * 110.46142 * 323.04836 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3551 2.1335 0.0005 5 6 2.9431 1.3860 1.2492 6 6 2.0561 1.4551 2.4940 7 6 2.9431 1.3862 -1.2492 8 6 2.0694 1.4451 -2.4758 9 8 0.8656 1.5356 -2.3590 10 7 2.6259 1.3973 -3.7024 11 6 4.0641 1.2877 -3.9871 12 6 4.2255 1.2391 -5.5216 13 6 2.8316 0.7555 -6.0020 14 1 2.7505 -0.3295 -5.9361 15 7 2.5553 1.2195 -7.3681 16 6 3.4009 0.5184 -8.3434 17 6 1.1322 1.0657 -7.6985 18 6 0.8395 1.7697 -8.9984 19 8 1.7288 2.3435 -9.5910 20 7 -0.4107 1.7626 -9.5020 21 6 -0.6768 2.4026 -10.6849 22 1 0.1152 2.9128 -11.2129 23 6 -1.9656 2.3947 -11.2042 24 7 -2.9292 1.7735 -10.5620 25 14 -2.3284 3.2674 -12.8156 26 1 -1.5022 2.6734 -13.8972 27 1 -3.7669 3.1114 -13.1500 28 1 -2.0046 4.7103 -12.6810 29 6 1.8932 1.4460 -4.9806 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5401 -0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 3.5783 0.5020 1.3043 34 1 3.5665 2.2787 1.1974 35 1 2.6787 1.6053 3.3759 36 1 1.3574 2.2861 2.3966 37 1 1.5001 0.5231 2.5961 38 1 3.5829 0.5054 -1.3009 39 1 3.5617 2.2823 -1.2004 40 1 4.5886 2.1550 -3.5862 41 1 4.4611 0.3743 -3.5441 42 1 4.9999 0.5267 -5.8062 43 1 4.4473 2.2302 -5.9174 44 1 3.1641 0.8688 -9.3479 45 1 3.2163 -0.5540 -8.2797 46 1 4.4499 0.7200 -8.1261 47 1 0.8945 0.0066 -7.7974 48 1 0.5257 1.5018 -6.9046 49 1 -1.1221 1.3047 -9.0275 50 1 -3.8287 1.7678 -10.9248 51 1 1.7088 2.4797 -5.2732 52 1 0.9524 0.9013 -4.9015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191911079.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:29 Heat of formation + Delta-G solvation = -71.411910 kcal Electronic energy + Delta-G solvation = -29453.503354 eV Core-core repulsion = 25452.474583 eV Total energy + Delta-G solvation = -4001.028771 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.31546 -40.38120 -39.16506 -37.54715 -36.66743 -35.78076 -33.29672 -32.65806 -32.29511 -31.17859 -29.78633 -29.30430 -26.75154 -26.13251 -24.64960 -23.71425 -22.50695 -21.47083 -20.93905 -20.59674 -20.02862 -19.79150 -18.23170 -17.84955 -17.46792 -16.70153 -16.56522 -16.32135 -16.07068 -15.93212 -15.55840 -15.40915 -15.16339 -15.08037 -14.68777 -14.62674 -14.28827 -13.96404 -13.84270 -13.69648 -13.56548 -13.38071 -13.09822 -12.97264 -12.83281 -12.79563 -12.63181 -12.44759 -12.33448 -12.15960 -12.13453 -12.03600 -11.92666 -11.76369 -11.66689 -11.45590 -11.34788 -10.86597 -10.29373 -10.07999 -10.01438 -9.62943 -9.27260 -8.46822 -5.95953 1.39026 1.40517 1.51754 1.51898 1.70906 1.92177 2.03864 2.27891 2.75791 3.19311 3.32178 3.41002 3.69612 3.78118 3.83677 3.92866 4.04825 4.16953 4.27787 4.32469 4.35980 4.39499 4.41328 4.46849 4.47207 4.54133 4.57428 4.64049 4.67273 4.73508 4.79764 4.82419 4.91062 5.01520 5.03188 5.07840 5.08631 5.19437 5.20496 5.23252 5.31773 5.40206 5.41642 5.48225 5.82019 5.82961 6.03066 6.04749 6.19009 6.57389 6.59155 7.11708 7.21706 7.54940 8.10132 8.70440 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016435 B = 0.002128 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.263644 B =13155.651040 C =14410.364595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.147 4.147 3 C -0.047 4.047 4 H 0.056 0.944 5 C -0.108 4.108 6 C -0.153 4.153 7 C -0.118 4.118 8 C 0.516 3.484 9 O -0.579 6.579 10 N -0.621 5.621 11 C 0.103 3.897 12 C -0.115 4.115 13 C 0.072 3.928 14 H 0.067 0.933 15 N -0.523 5.523 16 C 0.029 3.971 17 C 0.054 3.946 18 C 0.443 3.557 19 O -0.610 6.610 20 N -0.576 5.576 21 C -0.332 4.332 22 H 0.082 0.918 23 C -0.016 4.016 24 N -0.922 5.922 25 Si 0.995 3.005 26 H -0.270 1.270 27 H -0.272 1.272 28 H -0.272 1.272 29 C 0.112 3.888 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.043 0.957 37 H 0.049 0.951 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.056 0.944 45 H 0.031 0.969 46 H 0.089 0.911 47 H 0.065 0.935 48 H 0.097 0.903 49 H 0.394 0.606 50 H 0.277 0.723 51 H 0.056 0.944 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.684 -6.123 23.786 29.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.165 4.165 3 C -0.066 4.066 4 H 0.075 0.925 5 C -0.146 4.146 6 C -0.210 4.210 7 C -0.158 4.158 8 C 0.307 3.693 9 O -0.459 6.459 10 N -0.356 5.356 11 C -0.019 4.019 12 C -0.153 4.153 13 C -0.037 4.037 14 H 0.084 0.916 15 N -0.248 5.248 16 C -0.118 4.118 17 C -0.077 4.077 18 C 0.231 3.769 19 O -0.496 6.496 20 N -0.213 5.213 21 C -0.461 4.461 22 H 0.100 0.900 23 C -0.216 4.216 24 N -0.563 5.563 25 Si 0.818 3.182 26 H -0.195 1.195 27 H -0.196 1.196 28 H -0.197 1.197 29 C -0.012 4.012 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.136 0.864 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.125 0.875 43 H 0.097 0.903 44 H 0.075 0.925 45 H 0.049 0.951 46 H 0.107 0.893 47 H 0.083 0.917 48 H 0.115 0.885 49 H 0.227 0.773 50 H 0.086 0.914 51 H 0.074 0.926 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.531 -5.215 23.476 29.182 hybrid contribution -1.669 -0.559 -0.956 2.003 sum 14.862 -5.774 22.519 27.592 Atomic orbital electron populations 1.23737 0.96791 1.00863 1.01133 1.22915 0.95694 0.98269 0.99611 1.20199 0.96681 0.95644 0.94075 0.92526 1.21508 0.97447 1.03356 0.92263 1.21772 0.99901 1.01364 0.98000 1.21739 0.97953 1.06639 0.89438 1.21201 0.88765 0.75077 0.84269 1.90719 1.17275 1.51292 1.86578 1.48600 1.09356 1.72938 1.04663 1.22315 0.79669 1.04033 0.95908 1.22705 0.95296 1.03555 0.93705 1.22845 0.96883 0.97335 0.86593 0.91556 1.61598 1.03062 1.58041 1.02051 1.22426 0.97963 0.95084 0.96359 1.21756 0.91416 0.99240 0.95289 1.20646 0.82702 0.85121 0.88479 1.90454 1.46002 1.49544 1.63562 1.41959 1.08945 1.48716 1.21680 1.19644 0.95427 1.31441 0.99626 0.90030 1.26091 0.94609 0.98001 1.02858 1.69680 1.02240 1.43427 1.40997 0.84962 0.77451 0.78459 0.77301 1.19464 1.19632 1.19715 1.22073 0.95399 1.00317 0.83440 0.90441 0.88717 0.86407 0.90213 0.90410 0.91647 0.93810 0.93220 0.86204 0.86272 0.88974 0.88344 0.87452 0.90279 0.92546 0.95085 0.89286 0.91697 0.88499 0.77256 0.91351 0.92556 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.07 13.40 67.78 0.91 -3.16 16 2 C -0.15 -2.60 7.00 25.64 0.18 -2.42 16 3 C -0.05 -0.72 1.80 -11.54 -0.02 -0.74 16 4 H 0.06 1.18 7.49 -2.39 -0.02 1.16 16 5 C -0.11 -1.05 5.38 30.60 0.16 -0.89 16 6 C -0.15 -1.75 9.65 71.98 0.69 -1.05 16 7 C -0.12 -1.50 4.36 29.85 0.13 -1.37 16 8 C 0.52 11.73 7.53 87.66 0.66 12.39 16 9 O -0.58 -18.74 14.70 -3.03 -0.04 -18.78 16 10 N -0.62 -12.89 3.33 -811.66 -2.70 -15.59 16 11 C 0.10 1.23 6.47 86.75 0.56 1.79 16 12 C -0.11 -1.78 5.81 31.80 0.18 -1.60 16 13 C 0.07 1.66 2.72 46.32 0.13 1.79 16 14 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 15 N -0.52 -16.37 4.40 -893.37 -3.93 -20.30 16 16 C 0.03 0.87 9.08 127.69 1.16 2.03 16 17 C 0.05 1.97 5.26 85.56 0.45 2.42 16 18 C 0.44 21.54 7.47 87.66 0.65 22.19 16 19 O -0.61 -33.53 13.92 -3.06 -0.04 -33.57 16 20 N -0.58 -30.44 5.29 -306.97 -1.62 -32.07 16 21 C -0.33 -19.17 9.68 84.04 0.81 -18.36 16 22 H 0.08 4.96 7.16 -2.91 -0.02 4.94 16 23 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 24 N -0.92 -51.21 13.05 21.66 0.28 -50.93 16 25 Si 0.99 43.73 29.55 68.60 2.03 45.76 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 28 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 29 C 0.11 2.94 4.95 86.87 0.43 3.37 16 30 H 0.08 1.94 7.83 -2.91 -0.02 1.92 16 31 H 0.09 1.87 8.06 -2.91 -0.02 1.84 16 32 H 0.12 1.66 8.06 -2.91 -0.02 1.64 16 33 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.04 0.58 8.14 -2.39 -0.02 0.57 16 37 H 0.05 0.63 7.58 -2.39 -0.02 0.61 16 38 H 0.12 0.87 8.12 -2.39 -0.02 0.85 16 39 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.06 2.17 5.81 -2.39 -0.01 2.16 16 45 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.09 2.10 7.55 -2.39 -0.02 2.09 16 47 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16 48 H 0.10 3.38 6.36 -2.39 -0.02 3.36 16 49 H 0.39 20.11 7.90 -92.71 -0.73 19.37 16 50 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 51 H 0.06 1.75 8.06 -2.39 -0.02 1.73 16 52 H 0.06 1.75 7.72 -2.39 -0.02 1.73 16 Total: -1.00 -75.25 415.30 1.69 -73.56 By element: Atomic # 1 Polarization: 35.78 SS G_CDS: 0.15 Total: 35.94 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 7.56 Total: 15.99 kcal Atomic # 7 Polarization: -110.91 SS G_CDS: -7.97 Total: -118.88 kcal Atomic # 8 Polarization: -52.27 SS G_CDS: -0.09 Total: -52.35 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -75.25 1.69 -73.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191911079.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.145 kcal (2) G-P(sol) polarization free energy of solvation -75.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds