Wall clock time and date at job start Tue Mar 31 2020 20:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50702 * 119.99747 * 2 1 4 4 H 1.08997 * 109.47268 * 359.97438 * 3 2 1 5 5 C 1.53003 * 109.47054 * 240.00156 * 3 2 1 6 6 C 1.52995 * 109.47627 * 64.99836 * 5 3 2 7 7 C 1.53000 * 109.47396 * 120.00079 * 3 2 1 8 8 C 1.50699 * 109.47149 * 185.00045 * 7 3 2 9 9 O 1.21279 * 119.99867 * 359.97438 * 8 7 3 10 10 N 1.34775 * 119.99695 * 179.97438 * 8 7 3 11 11 C 1.44676 * 118.54742 * 359.97438 * 10 8 7 12 12 C 1.54940 * 109.52390 * 269.05394 * 11 10 8 13 13 C 1.47544 * 109.73673 * 290.52339 * 12 11 10 14 14 N 1.46265 * 114.37359 * 62.22002 * 13 12 11 15 15 C 1.46899 * 111.00029 * 148.55009 * 14 13 12 16 16 C 1.50701 * 109.46919 * 64.05774 * 15 14 13 17 17 O 1.21291 * 120.00183 * 4.77343 * 16 15 14 18 18 N 1.34771 * 120.00100 * 184.76760 * 16 15 14 19 19 C 1.37097 * 119.99999 * 179.97438 * 18 16 15 20 20 H 1.07993 * 120.00595 * 0.02562 * 19 18 16 21 21 C 1.38955 * 119.99831 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00261 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99789 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46889 * 90.00517 * 23 21 19 25 25 H 1.48503 * 109.46922 * 210.00113 * 23 21 19 26 26 H 1.48496 * 109.47248 * 330.00080 * 23 21 19 27 27 C 1.44757 * 110.64039 * 272.25314 * 14 13 12 28 28 C 1.47782 * 118.54538 * 179.97438 * 10 8 7 29 29 H 1.08005 * 120.00417 * 0.02562 * 1 2 3 30 30 H 1.08000 * 119.99731 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.00616 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47168 * 185.00177 * 5 3 2 33 33 H 1.09001 * 109.46772 * 304.99687 * 5 3 2 34 34 H 1.09000 * 109.47652 * 180.02562 * 6 5 3 35 35 H 1.09005 * 109.46726 * 300.00299 * 6 5 3 36 36 H 1.08995 * 109.47011 * 59.99713 * 6 5 3 37 37 H 1.08992 * 109.47206 * 64.99714 * 7 3 2 38 38 H 1.08998 * 109.46816 * 305.00024 * 7 3 2 39 39 H 1.09000 * 109.46058 * 149.04051 * 11 10 8 40 40 H 1.08996 * 109.46412 * 29.07667 * 11 10 8 41 41 H 1.09000 * 109.42765 * 170.44784 * 12 11 10 42 42 H 1.08999 * 109.38597 * 50.58052 * 12 11 10 43 43 H 1.08999 * 108.50389 * 300.95701 * 13 12 11 44 44 H 1.09005 * 108.38133 * 183.39558 * 13 12 11 45 45 H 1.09000 * 109.47128 * 184.05322 * 15 14 13 46 46 H 1.08995 * 109.47200 * 304.05636 * 15 14 13 47 47 H 0.96997 * 120.00272 * 0.02562 * 18 16 15 48 48 H 0.96996 * 120.00231 * 179.97438 * 22 21 19 49 49 H 1.09002 * 109.43635 * 214.22780 * 27 14 13 50 50 H 1.09004 * 109.43515 * 334.09031 * 27 14 13 51 51 H 1.09002 * 109.06383 * 258.66887 * 28 10 8 52 52 H 1.08997 * 109.06448 * 17.60115 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9430 1.3862 -1.2493 6 6 2.0564 1.4307 -2.4954 7 6 2.9431 1.3863 1.2492 8 6 3.6018 2.7402 1.3126 9 8 3.3891 3.5593 0.4440 10 7 4.4274 3.0406 2.3347 11 6 4.6583 2.0402 3.3539 12 6 3.6230 2.2133 4.4935 13 6 3.9027 3.4572 5.2361 14 7 3.7941 4.6760 4.4348 15 6 3.3456 5.8081 5.2565 16 6 4.3845 6.1100 6.3056 17 8 5.4361 5.5055 6.3094 18 7 4.1453 7.0518 7.2394 19 6 5.0903 7.3260 8.1941 20 1 6.0265 6.7878 8.1976 21 6 4.8434 8.2967 9.1573 22 7 3.7040 8.9514 9.1534 23 14 6.1307 8.6699 10.4585 24 1 7.0345 9.7412 9.9677 25 1 5.4593 9.1208 11.7040 26 1 6.9215 7.4446 10.7383 27 6 5.0530 4.9731 3.7848 28 6 5.0566 4.3775 2.3647 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9352 -0.0004 32 1 3.5539 2.2879 -1.2056 33 1 3.5905 0.5106 -1.2951 34 1 2.6831 1.4880 -3.3854 35 1 1.4455 0.5290 -2.5390 36 1 1.4089 2.3063 -2.4495 37 1 3.7084 0.6115 1.2056 38 1 2.3278 1.2396 2.1369 39 1 5.6645 2.1574 3.7565 40 1 4.5555 1.0467 2.9176 41 1 3.6863 1.3634 5.1731 42 1 2.6209 2.2629 4.0675 43 1 4.9129 3.3985 5.6413 44 1 3.2012 3.5263 6.0676 45 1 3.2042 6.6835 4.6227 46 1 2.4029 5.5543 5.7412 47 1 3.3043 7.5350 7.2366 48 1 3.5315 9.6287 9.8260 49 1 5.1842 6.0536 3.7253 50 1 5.8702 4.5405 4.3620 51 1 6.0861 4.2943 2.0164 52 1 4.5092 5.0436 1.6979 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196901542.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:50 Heat of formation + Delta-G solvation = -51.420296 kcal Electronic energy + Delta-G solvation = -30340.118112 eV Core-core repulsion = 26339.956243 eV Total energy + Delta-G solvation = -4000.161869 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.45645 -39.14123 -37.48814 -36.58914 -34.96596 -33.80171 -32.71685 -31.94708 -31.38146 -30.70849 -29.00876 -26.52330 -25.73273 -24.80476 -23.96820 -22.15589 -21.60810 -20.65801 -19.84713 -19.20640 -18.70515 -17.90501 -17.03396 -16.61387 -15.93086 -15.74066 -15.23798 -15.00673 -14.90430 -14.75490 -14.49133 -14.16960 -13.93671 -13.85029 -13.76843 -13.22674 -13.14366 -13.06645 -12.88769 -12.41602 -12.35369 -12.05814 -11.97137 -11.63343 -11.48213 -11.36478 -11.26436 -11.22964 -11.16186 -10.89785 -10.84978 -10.71051 -10.63553 -10.45466 -10.35983 -10.30006 -9.61298 -9.57038 -9.44286 -9.14318 -8.46231 -8.05378 -7.61215 -6.49360 -3.90960 2.06346 2.73821 3.11139 3.13328 3.20906 3.26016 3.79662 4.10151 4.20727 4.47124 4.57664 4.82114 4.86144 4.94203 4.95121 5.00889 5.05039 5.16155 5.17007 5.25103 5.32766 5.38211 5.40480 5.43712 5.57064 5.60851 5.65179 5.76072 5.79277 5.80929 5.83747 5.88733 5.97303 5.98031 6.02788 6.10013 6.18249 6.18898 6.21447 6.26763 6.42424 6.43697 6.54414 6.60039 6.69960 7.34114 7.46912 7.48829 7.51982 7.96431 8.31586 8.51053 9.08589 9.45070 9.94900 10.67245 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027384 B = 0.002151 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.250804 B =13013.472170 C =13125.463984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C -0.046 4.046 4 H 0.082 0.918 5 C -0.121 4.121 6 C -0.147 4.147 7 C -0.133 4.133 8 C 0.512 3.488 9 O -0.544 6.544 10 N -0.590 5.590 11 C 0.110 3.890 12 C -0.132 4.132 13 C 0.052 3.948 14 N -0.506 5.506 15 C 0.044 3.956 16 C 0.406 3.594 17 O -0.598 6.598 18 N -0.557 5.557 19 C -0.302 4.302 20 H 0.102 0.898 21 C 0.024 3.976 22 N -0.898 5.898 23 Si 0.930 3.070 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.270 1.270 27 C 0.051 3.949 28 C 0.118 3.882 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.393 0.607 48 H 0.273 0.727 49 H 0.074 0.926 50 H 0.067 0.933 51 H 0.059 0.941 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.971 -16.682 -15.656 23.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.162 4.162 3 C -0.065 4.065 4 H 0.100 0.900 5 C -0.158 4.158 6 C -0.205 4.205 7 C -0.173 4.173 8 C 0.301 3.699 9 O -0.422 6.422 10 N -0.322 5.322 11 C -0.014 4.014 12 C -0.171 4.171 13 C -0.076 4.076 14 N -0.228 5.228 15 C -0.087 4.087 16 C 0.191 3.809 17 O -0.485 6.485 18 N -0.192 5.192 19 C -0.432 4.432 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.538 5.538 23 Si 0.757 3.243 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.195 1.195 27 C -0.079 4.079 28 C -0.004 4.004 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.124 0.876 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.108 0.892 46 H 0.105 0.895 47 H 0.226 0.774 48 H 0.083 0.917 49 H 0.092 0.908 50 H 0.085 0.915 51 H 0.077 0.923 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.780 -16.559 -16.312 23.550 hybrid contribution 0.615 0.713 1.664 1.912 sum -3.165 -15.846 -14.648 21.810 Atomic orbital electron populations 1.23856 0.95974 1.01761 1.01399 1.22930 0.95912 0.98009 0.99369 1.20168 0.96953 0.95577 0.93783 0.89988 1.21650 0.98047 1.02740 0.93392 1.21725 0.99775 1.01538 0.97417 1.21746 0.99932 0.95395 1.00198 1.20613 0.78469 0.89438 0.81394 1.90633 1.62259 1.50577 1.38766 1.47581 1.46338 1.14772 1.23512 1.21631 0.99746 0.90977 0.89095 1.21459 0.99810 0.97935 0.97864 1.20942 1.02370 0.89548 0.94710 1.61289 1.29577 1.02505 1.29452 1.22222 0.97692 0.94541 0.94285 1.21050 0.89908 0.84298 0.85673 1.90478 1.27827 1.53743 1.76406 1.42019 1.18330 1.33224 1.25613 1.19695 0.98952 1.18911 1.05656 0.88009 1.25298 0.97398 0.96290 0.98880 1.69607 1.23201 1.24867 1.36164 0.85861 0.80009 0.78882 0.79555 1.20341 1.20845 1.19460 1.22290 0.91840 1.00704 0.93042 1.22047 0.96716 0.83224 0.98422 0.88571 0.88660 0.87556 0.89720 0.92827 0.93194 0.93071 0.92789 0.89192 0.88789 0.90540 0.90594 0.90554 0.91432 0.92293 0.92321 0.89249 0.89527 0.77372 0.91734 0.90766 0.91519 0.92320 0.89438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.46 14.32 29.02 0.42 -1.05 16 2 C -0.14 -1.13 7.75 -36.02 -0.28 -1.41 16 3 C -0.05 -0.44 1.80 -91.77 -0.17 -0.60 16 4 H 0.08 0.93 7.60 -51.93 -0.39 0.54 16 5 C -0.12 -1.18 5.18 -26.73 -0.14 -1.32 16 6 C -0.15 -1.32 9.73 37.15 0.36 -0.96 16 7 C -0.13 -1.23 3.62 -27.88 -0.10 -1.33 16 8 C 0.51 6.51 7.31 -10.99 -0.08 6.43 16 9 O -0.54 -8.63 13.26 5.56 0.07 -8.56 16 10 N -0.59 -7.30 2.54 -172.24 -0.44 -7.73 16 11 C 0.11 1.12 5.23 -3.99 -0.02 1.10 16 12 C -0.13 -1.46 5.95 -28.34 -0.17 -1.62 16 13 C 0.05 0.78 4.08 -6.80 -0.03 0.76 16 14 N -0.51 -8.08 4.37 -241.07 -1.05 -9.13 16 15 C 0.04 0.77 5.48 -4.98 -0.03 0.74 16 16 C 0.41 9.01 7.10 -10.99 -0.08 8.93 16 17 O -0.60 -14.73 12.13 5.55 0.07 -14.66 16 18 N -0.56 -13.67 5.29 -10.97 -0.06 -13.73 16 19 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 20 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 21 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.06 13.05 55.50 0.72 -23.34 16 23 Si 0.93 20.70 29.55 -169.99 -5.02 15.67 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 26 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 27 C 0.05 0.80 4.13 -4.45 -0.02 0.79 16 28 C 0.12 1.63 6.45 -2.82 -0.02 1.61 16 29 H 0.10 0.76 7.83 -52.48 -0.41 0.35 16 30 H 0.10 0.60 8.06 -52.49 -0.42 0.18 16 31 H 0.11 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.08 1.03 5.88 -51.93 -0.31 0.73 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.05 0.42 7.38 -51.93 -0.38 0.04 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.66 7.30 -51.93 -0.38 0.29 16 38 H 0.09 0.81 7.27 -51.93 -0.38 0.43 16 39 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 40 H 0.08 0.57 6.18 -51.93 -0.32 0.25 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.76 7.42 -51.93 -0.39 0.38 16 43 H 0.06 1.03 6.03 -51.93 -0.31 0.71 16 44 H 0.06 0.93 7.54 -51.93 -0.39 0.53 16 45 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 46 H 0.09 1.39 7.92 -51.93 -0.41 0.98 16 47 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 48 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 49 H 0.07 1.26 7.47 -51.93 -0.39 0.87 16 50 H 0.07 1.18 6.07 -51.93 -0.32 0.87 16 51 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 52 H 0.09 1.32 6.97 -51.93 -0.36 0.96 16 LS Contribution 400.04 15.07 6.03 6.03 Total: -1.00 -30.62 400.04 -9.03 -39.66 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -8.77 Total: 11.56 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -0.59 Total: 4.22 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: -0.82 Total: -53.93 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: 0.14 Total: -23.22 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.62 -9.03 -39.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196901542.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.762 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds