Wall clock time and date at job start Tue Mar 31 2020 20:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 H 1.09007 * 109.46862 * 0.02562 * 3 2 1 5 5 C 1.52993 * 109.47475 * 240.00406 * 3 2 1 6 6 C 1.52997 * 109.47662 * 64.99579 * 5 3 2 7 7 C 1.53001 * 109.47047 * 120.00002 * 3 2 1 8 8 C 1.50705 * 109.47102 * 295.00097 * 7 3 2 9 9 O 1.21286 * 119.99696 * 0.02562 * 8 7 3 10 10 N 1.34770 * 119.99943 * 179.97438 * 8 7 3 11 11 C 1.46931 * 120.63107 * 359.73025 * 10 8 7 12 12 C 1.53621 * 108.54444 * 126.36459 * 11 10 8 13 13 C 1.53038 * 109.24306 * 54.85238 * 12 11 10 14 14 N 1.46910 * 109.45901 * 178.48914 * 13 12 11 15 15 C 1.46905 * 111.00034 * 275.07019 * 14 13 12 16 16 C 1.50694 * 109.46995 * 179.97438 * 15 14 13 17 17 O 1.21297 * 119.99854 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99952 * 179.97438 * 16 15 14 19 19 C 1.37103 * 120.00018 * 180.02562 * 18 16 15 20 20 H 1.07997 * 119.99745 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99881 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99892 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99983 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47360 * 90.00215 * 23 21 19 25 25 H 1.48500 * 109.46732 * 209.99678 * 23 21 19 26 26 H 1.48499 * 109.47289 * 329.99602 * 23 21 19 27 27 C 1.53034 * 109.54013 * 298.51237 * 13 12 11 28 28 C 1.46930 * 120.63224 * 180.02562 * 10 8 7 29 29 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 30 30 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 31 31 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 32 32 H 1.09005 * 109.47349 * 185.00043 * 5 3 2 33 33 H 1.09006 * 109.47045 * 304.99625 * 5 3 2 34 34 H 1.09006 * 109.46853 * 59.99928 * 6 5 3 35 35 H 1.08995 * 109.47515 * 179.97438 * 6 5 3 36 36 H 1.09005 * 109.47117 * 300.00605 * 6 5 3 37 37 H 1.08995 * 109.46946 * 55.00366 * 7 3 2 38 38 H 1.08999 * 109.46868 * 175.00678 * 7 3 2 39 39 H 1.09000 * 109.58258 * 246.19717 * 11 10 8 40 40 H 1.08995 * 109.58492 * 6.62049 * 11 10 8 41 41 H 1.09003 * 109.63273 * 294.85910 * 12 11 10 42 42 H 1.09004 * 109.46090 * 174.74061 * 12 11 10 43 43 H 1.08999 * 109.44643 * 58.52745 * 13 12 11 44 44 H 1.00896 * 110.99497 * 151.11704 * 14 13 12 45 45 H 1.09000 * 109.46846 * 300.00000 * 15 14 13 46 46 H 1.09004 * 109.46870 * 59.99964 * 15 14 13 47 47 H 0.96999 * 119.99973 * 0.02562 * 18 16 15 48 48 H 0.97000 * 120.00504 * 180.02562 * 22 21 19 49 49 H 1.09003 * 109.50036 * 301.41172 * 27 13 12 50 50 H 1.09000 * 109.52587 * 181.33339 * 27 13 12 51 51 H 1.08997 * 109.58370 * 353.37837 * 28 10 8 52 52 H 1.08997 * 109.58544 * 113.65916 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9430 1.3862 -1.2492 6 6 2.0564 1.4308 -2.4953 7 6 2.9431 1.3861 1.2493 8 6 2.0697 1.4300 2.4766 9 8 0.8626 1.3990 2.3633 10 7 2.6301 1.5026 3.7002 11 6 4.0910 1.5338 3.8538 12 6 4.4670 2.7585 4.7016 13 6 3.6972 2.7125 6.0234 14 7 4.0804 3.8627 6.8532 15 6 5.2979 3.5741 7.6230 16 6 5.6595 4.7742 8.4596 17 8 4.9705 5.7716 8.4189 18 7 6.7479 4.7388 9.2537 19 6 7.0766 5.8305 10.0152 20 1 6.4632 6.7186 9.9790 21 6 8.1990 5.7942 10.8335 22 7 8.5138 6.8404 11.5637 23 14 9.2604 4.2583 10.8955 24 1 10.3231 4.3489 9.8622 25 1 9.8841 4.1416 12.2381 26 1 8.4178 3.0634 10.6356 27 6 2.1938 2.7651 5.7423 28 6 1.7918 1.5456 4.9061 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5400 -0.9354 -0.0045 31 1 1.8500 -0.9353 -0.0004 32 1 3.5540 2.2879 -1.2055 33 1 3.5906 0.5105 -1.2952 34 1 1.4089 2.3065 -2.4493 35 1 2.6830 1.4891 -3.3852 36 1 1.4455 0.5291 -2.5390 37 1 3.5905 0.5105 1.2951 38 1 3.5539 2.2878 1.2056 39 1 4.4254 0.6241 4.3525 40 1 4.5600 1.6087 2.8728 41 1 4.2099 3.6702 4.1623 42 1 5.5381 2.7453 4.9037 43 1 3.9360 1.7889 6.5505 44 1 3.3241 4.1371 7.4621 45 1 5.1220 2.7171 8.2732 46 1 6.1157 3.3490 6.9385 47 1 7.2986 3.9410 9.2865 48 1 9.2975 6.8152 12.1347 49 1 1.9579 3.6767 5.1932 50 1 1.6464 2.7562 6.6848 51 1 0.7434 1.6283 4.6196 52 1 1.9411 0.6357 5.4874 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202131183.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:28 Heat of formation + Delta-G solvation = -83.923927 kcal Electronic energy + Delta-G solvation = -29072.004402 eV Core-core repulsion = 25070.433070 eV Total energy + Delta-G solvation = -4001.571333 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.30445 -40.32397 -39.05373 -37.51918 -36.29574 -35.76178 -33.75591 -32.92564 -32.58281 -31.90589 -30.89544 -28.49530 -26.44486 -25.48956 -24.58226 -23.67655 -22.50865 -21.61572 -21.27713 -20.57296 -20.25583 -19.71048 -18.17625 -17.64635 -17.08008 -16.80234 -16.67750 -16.50271 -15.95312 -15.72512 -15.57973 -15.47610 -15.07636 -14.98089 -14.70144 -14.69193 -14.42721 -14.28412 -13.92629 -13.86059 -13.74506 -13.34066 -13.13802 -12.97984 -12.92697 -12.80457 -12.55151 -12.40618 -12.25417 -12.05421 -12.03235 -11.97139 -11.79546 -11.64042 -11.50383 -11.41266 -11.34050 -10.73353 -10.42422 -10.24325 -10.00491 -9.60084 -9.31546 -8.40599 -6.01956 1.31018 1.37181 1.46065 1.56091 1.74455 1.96740 2.07961 2.24231 2.72432 3.15649 3.36026 3.56439 3.81374 3.85747 3.87173 3.95126 4.12275 4.16479 4.23894 4.35264 4.38102 4.41461 4.44782 4.46305 4.53019 4.56700 4.61082 4.64310 4.66871 4.75313 4.83624 4.86442 4.89467 5.01517 5.04562 5.09141 5.10181 5.18560 5.21190 5.39846 5.41098 5.47934 5.54017 5.60192 5.85071 5.92441 6.08367 6.10735 6.38467 6.48920 6.60601 6.88877 7.27673 7.40573 7.97796 8.77127 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024304 B = 0.001802 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.776700 B =15530.480084 C =15936.992553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.145 4.145 3 C -0.045 4.045 4 H 0.055 0.945 5 C -0.111 4.111 6 C -0.153 4.153 7 C -0.129 4.129 8 C 0.506 3.494 9 O -0.575 6.575 10 N -0.615 5.615 11 C 0.110 3.890 12 C -0.123 4.123 13 C 0.090 3.910 14 N -0.685 5.685 15 C 0.064 3.936 16 C 0.447 3.553 17 O -0.617 6.617 18 N -0.590 5.590 19 C -0.330 4.330 20 H 0.053 0.947 21 C -0.017 4.017 22 N -0.935 5.935 23 Si 0.967 3.033 24 H -0.256 1.256 25 H -0.277 1.277 26 H -0.229 1.229 27 C -0.128 4.128 28 C 0.120 3.880 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.120 0.880 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.056 0.944 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.343 0.657 45 H 0.077 0.923 46 H 0.117 0.883 47 H 0.390 0.610 48 H 0.279 0.721 49 H 0.054 0.946 50 H 0.079 0.921 51 H 0.074 0.926 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.924 -22.629 -24.408 33.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.163 4.163 3 C -0.064 4.064 4 H 0.074 0.926 5 C -0.149 4.149 6 C -0.210 4.210 7 C -0.168 4.168 8 C 0.296 3.704 9 O -0.455 6.455 10 N -0.348 5.348 11 C -0.013 4.013 12 C -0.161 4.161 13 C -0.019 4.019 14 N -0.318 5.318 15 C -0.068 4.068 16 C 0.235 3.765 17 O -0.501 6.501 18 N -0.232 5.232 19 C -0.460 4.460 20 H 0.071 0.929 21 C -0.215 4.215 22 N -0.576 5.576 23 Si 0.787 3.213 24 H -0.180 1.180 25 H -0.202 1.202 26 H -0.152 1.152 27 C -0.167 4.167 28 C -0.004 4.004 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.133 0.867 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.138 0.862 38 H 0.131 0.869 39 H 0.108 0.892 40 H 0.130 0.870 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.162 0.838 45 H 0.095 0.905 46 H 0.135 0.865 47 H 0.226 0.774 48 H 0.088 0.912 49 H 0.073 0.927 50 H 0.097 0.903 51 H 0.093 0.907 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.556 -21.549 -24.851 33.749 hybrid contribution -0.018 -0.290 1.523 1.551 sum -7.574 -21.839 -23.327 32.840 Atomic orbital electron populations 1.23686 0.96594 1.00810 1.00983 1.22834 0.95750 0.97972 0.99710 1.20157 0.96554 0.95751 0.93911 0.92623 1.21520 0.97567 1.03152 0.92614 1.21770 0.99926 1.01424 0.97899 1.21805 0.98365 1.06237 0.90437 1.21297 0.88910 0.74857 0.85356 1.90691 1.16702 1.51336 1.86735 1.48302 1.08123 1.72784 1.05614 1.22071 0.78257 0.98468 1.02471 1.22014 1.00941 0.98285 0.94903 1.21592 0.94318 0.91630 0.94332 1.60119 1.06546 1.37329 1.27796 1.21677 0.95802 0.93207 0.96093 1.21074 0.81859 0.90797 0.82795 1.90553 1.53693 1.36690 1.69210 1.42021 1.25872 1.15045 1.40243 1.19004 1.10900 0.94514 1.21558 0.92914 1.26159 0.98364 1.02025 0.94952 1.69810 1.27941 1.32142 1.27691 0.85337 0.78936 0.78008 0.79041 1.18007 1.20181 1.15222 1.22009 0.95553 0.98533 1.00584 1.21459 0.95647 0.97821 0.85456 0.90398 0.88671 0.86673 0.90807 0.90346 0.93709 0.91867 0.93037 0.86230 0.86947 0.89163 0.87026 0.92559 0.89563 0.91810 0.83777 0.90513 0.86536 0.77390 0.91160 0.92683 0.90253 0.90714 0.89940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.36 13.22 67.79 0.90 -2.46 16 2 C -0.14 -2.20 6.76 25.65 0.17 -2.03 16 3 C -0.04 -0.61 1.82 -11.54 -0.02 -0.63 16 4 H 0.06 1.04 7.60 -2.38 -0.02 1.03 16 5 C -0.11 -1.03 5.39 30.59 0.16 -0.86 16 6 C -0.15 -1.64 9.73 71.98 0.70 -0.94 16 7 C -0.13 -1.42 3.51 29.85 0.10 -1.32 16 8 C 0.51 9.38 7.45 87.66 0.65 10.03 16 9 O -0.58 -15.28 13.58 -3.05 -0.04 -15.32 16 10 N -0.61 -9.66 2.97 -817.99 -2.43 -12.08 16 11 C 0.11 1.10 6.37 86.51 0.55 1.65 16 12 C -0.12 -1.89 5.60 30.82 0.17 -1.72 16 13 C 0.09 1.68 2.45 44.94 0.11 1.79 16 14 N -0.69 -18.89 5.93 -495.43 -2.94 -21.83 16 15 C 0.06 1.82 5.96 85.55 0.51 2.33 16 16 C 0.45 19.68 7.82 87.66 0.69 20.36 16 17 O -0.62 -34.08 15.78 -3.08 -0.05 -34.13 16 18 N -0.59 -27.18 5.09 -306.99 -1.56 -28.74 16 19 C -0.33 -19.24 10.16 84.04 0.85 -18.38 16 20 H 0.05 3.69 7.39 -2.91 -0.02 3.66 16 21 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 22 N -0.94 -56.13 13.96 21.66 0.30 -55.83 16 23 Si 0.97 37.81 27.74 68.60 1.90 39.71 16 24 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 25 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 26 H -0.23 -7.38 6.52 99.48 0.65 -6.73 16 27 C -0.13 -2.40 5.36 30.68 0.16 -2.24 16 28 C 0.12 2.05 6.43 86.37 0.56 2.60 16 29 H 0.08 1.66 7.83 -2.91 -0.02 1.64 16 30 H 0.09 1.54 8.06 -2.91 -0.02 1.51 16 31 H 0.12 1.40 8.06 -2.91 -0.02 1.37 16 32 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.04 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.05 0.61 7.38 -2.38 -0.02 0.59 16 37 H 0.12 0.71 7.93 -2.39 -0.02 0.69 16 38 H 0.11 0.90 7.70 -2.39 -0.02 0.88 16 39 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.11 0.60 5.93 -2.39 -0.01 0.59 16 41 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.09 1.20 7.42 -2.38 -0.02 1.18 16 43 H 0.06 0.98 7.80 -2.39 -0.02 0.96 16 44 H 0.34 10.47 8.03 -89.70 -0.72 9.75 16 45 H 0.08 1.73 8.05 -2.39 -0.02 1.71 16 46 H 0.12 2.65 7.41 -2.38 -0.02 2.64 16 47 H 0.39 14.61 5.76 -92.71 -0.53 14.08 16 48 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 49 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.08 1.41 8.10 -2.39 -0.02 1.39 16 51 H 0.07 1.59 7.01 -2.39 -0.02 1.57 16 52 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -81.62 410.22 1.52 -80.10 By element: Atomic # 1 Polarization: 40.79 SS G_CDS: -0.41 Total: 40.39 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 6.74 Total: 7.74 kcal Atomic # 7 Polarization: -111.86 SS G_CDS: -6.63 Total: -118.48 kcal Atomic # 8 Polarization: -49.36 SS G_CDS: -0.09 Total: -49.45 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 1.90 Total: 39.71 kcal Total: -81.62 1.52 -80.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202131183.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.827 kcal (2) G-P(sol) polarization free energy of solvation -81.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds