Wall clock time and date at job start Tue Mar 31 2020 20:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50704 * 119.99891 * 2 1 4 4 H 1.09002 * 109.47126 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.47357 * 120.00158 * 3 2 1 6 6 C 1.53005 * 109.46678 * 294.75279 * 5 3 2 7 7 C 1.53003 * 109.47156 * 240.00267 * 3 2 1 8 8 C 1.50696 * 109.47079 * 174.00093 * 7 3 2 9 9 O 1.21277 * 120.00109 * 354.06393 * 8 7 3 10 10 N 1.34777 * 119.99772 * 174.05645 * 8 7 3 11 11 C 1.46934 * 120.63264 * 359.72838 * 10 8 7 12 12 C 1.52757 * 109.00603 * 233.57929 * 11 10 8 13 13 C 1.53041 * 109.38456 * 305.58606 * 12 11 10 14 14 N 1.46902 * 109.44735 * 181.25465 * 13 12 11 15 15 C 1.46897 * 110.99928 * 84.94296 * 14 13 12 16 16 C 1.50695 * 109.47189 * 179.97438 * 15 14 13 17 17 O 1.21299 * 120.00109 * 359.97438 * 16 15 14 18 18 N 1.34780 * 120.00495 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00327 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99682 * 0.02562 * 19 18 16 21 21 C 1.38945 * 119.99989 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99881 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00102 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47301 * 59.99921 * 23 21 19 25 25 H 1.48507 * 109.47403 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47199 * 299.99699 * 23 21 19 27 27 C 1.53042 * 109.53682 * 61.24040 * 13 12 11 28 28 C 1.46928 * 120.63034 * 179.97438 * 10 8 7 29 29 H 1.07998 * 119.99369 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.00086 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.00086 * 179.97438 * 2 1 3 32 32 H 1.08992 * 109.47338 * 174.75695 * 5 3 2 33 33 H 1.08999 * 109.46958 * 54.75158 * 5 3 2 34 34 H 1.09000 * 109.47306 * 55.26240 * 6 5 3 35 35 H 1.09002 * 109.46902 * 175.25736 * 6 5 3 36 36 H 1.08997 * 109.47415 * 295.26011 * 6 5 3 37 37 H 1.09004 * 109.46627 * 294.00570 * 7 3 2 38 38 H 1.08997 * 109.47009 * 54.00116 * 7 3 2 39 39 H 1.08998 * 109.58146 * 353.41339 * 11 10 8 40 40 H 1.08990 * 109.58777 * 113.83670 * 11 10 8 41 41 H 1.09001 * 109.56507 * 185.54929 * 12 11 10 42 42 H 1.09001 * 109.38914 * 65.51439 * 12 11 10 43 43 H 1.09001 * 109.46025 * 301.22206 * 13 12 11 44 44 H 1.00895 * 111.00393 * 320.98117 * 14 13 12 45 45 H 1.09002 * 109.46932 * 299.99314 * 15 14 13 46 46 H 1.08993 * 109.47745 * 59.99724 * 15 14 13 47 47 H 0.97002 * 119.99703 * 0.02562 * 18 16 15 48 48 H 0.97003 * 119.99960 * 180.02562 * 22 21 19 49 49 H 1.09001 * 109.49241 * 178.68527 * 27 13 12 50 50 H 1.08997 * 109.52496 * 58.60915 * 27 13 12 51 51 H 1.09001 * 109.58825 * 246.15987 * 28 10 8 52 52 H 1.08994 * 109.58679 * 6.44407 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9432 1.3863 1.2492 6 6 2.0563 1.4370 2.4950 7 6 2.9431 1.3863 -1.2493 8 6 3.5827 2.7486 -1.3258 9 8 3.2750 3.6086 -0.5279 10 7 4.4966 3.0113 -2.2808 11 6 4.8841 1.9779 -3.2508 12 6 6.4041 1.8272 -3.2366 13 6 7.0523 3.1921 -3.4793 14 7 8.5137 3.0437 -3.4958 15 6 8.9878 2.6501 -4.8293 16 6 10.4879 2.5085 -4.8074 17 8 11.1018 2.7155 -3.7820 18 7 11.1476 2.1517 -5.9273 19 6 12.5124 2.0234 -5.9076 20 1 13.0589 2.2077 -4.9945 21 6 13.1924 1.6561 -7.0622 22 7 12.5273 1.4314 -8.1731 23 14 15.0519 1.4805 -7.0352 24 1 15.4367 0.4415 -6.0464 25 1 15.5313 1.0821 -8.3831 26 1 15.6662 2.7778 -6.6544 27 6 6.6502 4.1558 -2.3604 28 6 5.1284 4.3349 -2.3685 29 1 -0.5399 -0.9354 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8501 -0.9353 0.0004 32 1 3.5572 2.2856 1.2035 33 1 3.5876 0.5084 1.2974 34 1 1.3831 0.5798 2.4968 35 1 2.6816 1.4098 3.3874 36 1 1.4726 2.3575 2.4882 37 1 3.7194 0.6228 -1.1972 38 1 2.3309 1.2220 -2.1360 39 1 4.4216 1.0293 -2.9783 40 1 4.5582 2.2724 -4.2483 41 1 6.7096 1.1347 -4.0210 42 1 6.7205 1.4414 -2.2674 43 1 6.7166 3.5882 -4.4377 44 1 8.8182 2.3851 -2.7947 45 1 8.5367 1.6981 -5.1089 46 1 8.7058 3.4129 -5.5550 47 1 10.6567 1.9865 -6.7475 48 1 13.0020 1.1746 -8.9791 49 1 7.1309 5.1208 -2.5213 50 1 6.9639 3.7490 -1.3991 51 1 4.8229 4.8252 -3.2928 52 1 4.8252 4.9418 -1.5155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202131184.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:34 Heat of formation + Delta-G solvation = -68.878857 kcal Electronic energy + Delta-G solvation = -29051.029925 eV Core-core repulsion = 25050.110996 eV Total energy + Delta-G solvation = -4000.918929 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.63511 -38.73524 -37.93442 -36.85714 -35.11226 -33.88283 -32.19159 -32.02892 -31.29761 -30.94530 -30.22643 -26.94181 -25.34672 -24.37517 -23.49643 -22.98287 -22.08083 -20.90327 -19.97611 -19.46287 -18.98061 -17.89738 -17.44184 -16.20830 -16.09390 -15.81461 -15.24091 -15.17622 -15.03323 -14.83982 -14.59056 -14.30373 -14.11918 -14.00085 -13.89341 -13.66955 -13.44689 -13.01179 -12.96512 -12.70629 -12.56091 -12.24198 -12.17350 -11.92539 -11.60104 -11.53590 -11.49913 -11.42664 -11.37874 -11.06833 -11.03070 -10.91906 -10.83814 -10.65610 -10.45634 -10.22949 -9.93083 -9.67958 -9.51902 -8.90704 -8.48543 -8.06654 -7.97624 -6.43585 -3.84456 1.90739 2.40341 2.75234 3.18845 3.24623 3.29086 3.88523 4.04509 4.14707 4.27218 4.38446 4.44761 4.63003 4.69163 4.77934 4.80531 4.90789 5.01479 5.03658 5.07520 5.07662 5.13222 5.18865 5.22454 5.27196 5.34599 5.43660 5.49543 5.51205 5.53898 5.62684 5.66976 5.71251 5.72587 5.83621 5.84695 5.95349 5.98913 6.05259 6.07713 6.14391 6.26558 6.27820 6.35305 6.43873 7.14719 7.20596 7.53280 7.62779 7.95044 8.04258 8.59312 9.16008 9.52197 10.03771 10.74016 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023679 B = 0.001741 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.179555 B =16078.193942 C =16290.075479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C -0.047 4.047 4 H 0.083 0.917 5 C -0.119 4.119 6 C -0.148 4.148 7 C -0.134 4.134 8 C 0.516 3.484 9 O -0.540 6.540 10 N -0.612 5.612 11 C 0.111 3.889 12 C -0.169 4.169 13 C 0.089 3.911 14 N -0.663 5.663 15 C 0.051 3.949 16 C 0.439 3.561 17 O -0.583 6.583 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C -0.120 4.120 28 C 0.111 3.889 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.350 0.650 45 H 0.043 0.957 46 H 0.085 0.915 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.085 0.915 50 H 0.067 0.933 51 H 0.067 0.933 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.510 -2.550 10.564 26.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.163 4.163 3 C -0.065 4.065 4 H 0.102 0.898 5 C -0.157 4.157 6 C -0.206 4.206 7 C -0.174 4.174 8 C 0.305 3.695 9 O -0.417 6.417 10 N -0.346 5.346 11 C -0.013 4.013 12 C -0.209 4.209 13 C -0.022 4.022 14 N -0.294 5.294 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.468 6.468 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.159 4.159 28 C -0.011 4.011 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.170 0.830 45 H 0.061 0.939 46 H 0.103 0.897 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.103 0.897 50 H 0.085 0.915 51 H 0.085 0.915 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -24.033 -1.331 11.373 26.622 hybrid contribution 0.456 -1.350 -0.874 1.671 sum -23.578 -2.680 10.500 25.949 Atomic orbital electron populations 1.23870 0.95943 1.01820 1.01238 1.22932 0.95930 0.97998 0.99474 1.20180 0.96954 0.95798 0.93615 0.89833 1.21598 0.97990 1.02567 0.93518 1.21734 0.99784 1.01670 0.97380 1.21745 1.00236 0.95079 1.00370 1.20656 0.78933 0.90091 0.79849 1.90676 1.62379 1.48383 1.40298 1.48199 1.41234 1.13689 1.31470 1.21629 0.95519 0.91384 0.92731 1.22666 0.95268 0.99834 1.03154 1.21583 0.87858 0.93630 0.99127 1.60169 1.08291 1.55192 1.05714 1.21699 0.95234 0.99470 0.91754 1.19829 0.88356 0.84309 0.85019 1.90529 1.68821 1.55343 1.32060 1.41858 1.07735 1.60056 1.10350 1.19657 0.81881 1.43620 0.97831 0.87980 1.25258 1.00654 0.97190 0.94807 1.69602 1.36737 1.47135 1.00859 0.85914 0.82145 0.78967 0.77170 1.19933 1.20972 1.19867 1.21891 0.93852 1.00989 0.99191 1.21665 0.92494 0.83963 1.03014 0.88518 0.88600 0.87364 0.90380 0.92465 0.92839 0.92994 0.92803 0.88833 0.88730 0.89701 0.91027 0.90392 0.91099 0.90348 0.83026 0.93928 0.89652 0.77481 0.91821 0.89681 0.91462 0.91493 0.88839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.17 14.32 29.01 0.42 -0.76 16 2 C -0.15 -0.94 7.69 -36.03 -0.28 -1.22 16 3 C -0.05 -0.36 1.79 -91.77 -0.16 -0.53 16 4 H 0.08 0.78 7.47 -51.93 -0.39 0.39 16 5 C -0.12 -1.03 5.20 -26.73 -0.14 -1.17 16 6 C -0.15 -1.18 9.80 37.16 0.36 -0.82 16 7 C -0.13 -0.97 3.58 -27.88 -0.10 -1.07 16 8 C 0.52 5.24 7.26 -10.99 -0.08 5.16 16 9 O -0.54 -7.25 13.71 5.56 0.08 -7.17 16 10 N -0.61 -5.63 2.98 -173.01 -0.52 -6.14 16 11 C 0.11 0.81 6.31 -3.93 -0.02 0.78 16 12 C -0.17 -1.53 5.31 -26.84 -0.14 -1.67 16 13 C 0.09 0.99 2.43 -67.67 -0.16 0.82 16 14 N -0.66 -10.11 5.87 -107.95 -0.63 -10.74 16 15 C 0.05 0.85 5.96 -4.98 -0.03 0.83 16 16 C 0.44 10.19 7.82 -10.99 -0.09 10.10 16 17 O -0.58 -15.72 15.78 5.54 0.09 -15.64 16 18 N -0.56 -14.08 5.29 -10.96 -0.06 -14.13 16 19 C -0.30 -8.32 9.68 -14.94 -0.14 -8.46 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 23 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 C -0.12 -1.29 5.69 -26.59 -0.15 -1.44 16 28 C 0.11 1.08 6.44 -3.69 -0.02 1.06 16 29 H 0.10 0.49 8.06 -52.49 -0.42 0.07 16 30 H 0.10 0.59 7.83 -52.49 -0.41 0.18 16 31 H 0.11 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.08 0.85 6.18 -51.93 -0.32 0.53 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.39 7.24 -51.93 -0.38 0.01 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.56 7.37 -51.93 -0.38 0.18 16 38 H 0.09 0.55 8.13 -51.93 -0.42 0.13 16 39 H 0.08 0.46 5.88 -51.93 -0.31 0.16 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.70 7.42 -51.93 -0.39 0.31 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.84 7.80 -51.93 -0.40 0.44 16 44 H 0.35 5.63 8.18 -39.29 -0.32 5.31 16 45 H 0.04 0.63 7.41 -51.93 -0.38 0.24 16 46 H 0.09 1.33 8.05 -51.93 -0.42 0.91 16 47 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 48 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 50 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.09 1.02 7.00 -51.93 -0.36 0.65 16 LS Contribution 412.93 15.07 6.22 6.22 Total: -1.00 -32.21 412.93 -8.91 -41.11 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -8.95 Total: 12.02 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -0.84 Total: 2.12 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.48 Total: -54.56 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: 0.16 Total: -22.81 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.21 -8.91 -41.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202131184.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.765 kcal (2) G-P(sol) polarization free energy of solvation -32.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds