Wall clock time and date at job start Tue Mar 31 2020 20:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50704 * 119.99891 * 2 1 4 4 H 1.09002 * 109.47126 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.47357 * 120.00158 * 3 2 1 6 6 C 1.53005 * 109.46678 * 294.75279 * 5 3 2 7 7 C 1.53003 * 109.47156 * 240.00267 * 3 2 1 8 8 C 1.50696 * 109.47079 * 174.00093 * 7 3 2 9 9 O 1.21277 * 120.00109 * 354.06393 * 8 7 3 10 10 N 1.34777 * 119.99772 * 174.05645 * 8 7 3 11 11 C 1.46934 * 120.63264 * 359.72838 * 10 8 7 12 12 C 1.52757 * 109.00603 * 233.57929 * 11 10 8 13 13 C 1.53041 * 109.38456 * 305.58606 * 12 11 10 14 14 N 1.46902 * 109.44735 * 181.25465 * 13 12 11 15 15 C 1.46897 * 110.99928 * 84.94296 * 14 13 12 16 16 C 1.50695 * 109.47189 * 179.97438 * 15 14 13 17 17 O 1.21299 * 120.00109 * 359.97438 * 16 15 14 18 18 N 1.34780 * 120.00495 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00327 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99682 * 0.02562 * 19 18 16 21 21 C 1.38945 * 119.99989 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99881 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00102 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47301 * 59.99921 * 23 21 19 25 25 H 1.48507 * 109.47403 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47199 * 299.99699 * 23 21 19 27 27 C 1.53042 * 109.53682 * 61.24040 * 13 12 11 28 28 C 1.46928 * 120.63034 * 179.97438 * 10 8 7 29 29 H 1.07998 * 119.99369 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.00086 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.00086 * 179.97438 * 2 1 3 32 32 H 1.08992 * 109.47338 * 174.75695 * 5 3 2 33 33 H 1.08999 * 109.46958 * 54.75158 * 5 3 2 34 34 H 1.09000 * 109.47306 * 55.26240 * 6 5 3 35 35 H 1.09002 * 109.46902 * 175.25736 * 6 5 3 36 36 H 1.08997 * 109.47415 * 295.26011 * 6 5 3 37 37 H 1.09004 * 109.46627 * 294.00570 * 7 3 2 38 38 H 1.08997 * 109.47009 * 54.00116 * 7 3 2 39 39 H 1.08998 * 109.58146 * 353.41339 * 11 10 8 40 40 H 1.08990 * 109.58777 * 113.83670 * 11 10 8 41 41 H 1.09001 * 109.56507 * 185.54929 * 12 11 10 42 42 H 1.09001 * 109.38914 * 65.51439 * 12 11 10 43 43 H 1.09001 * 109.46025 * 301.22206 * 13 12 11 44 44 H 1.00895 * 111.00393 * 320.98117 * 14 13 12 45 45 H 1.09002 * 109.46932 * 299.99314 * 15 14 13 46 46 H 1.08993 * 109.47745 * 59.99724 * 15 14 13 47 47 H 0.97002 * 119.99703 * 0.02562 * 18 16 15 48 48 H 0.97003 * 119.99960 * 180.02562 * 22 21 19 49 49 H 1.09001 * 109.49241 * 178.68527 * 27 13 12 50 50 H 1.08997 * 109.52496 * 58.60915 * 27 13 12 51 51 H 1.09001 * 109.58825 * 246.15987 * 28 10 8 52 52 H 1.08994 * 109.58679 * 6.44407 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9432 1.3863 1.2492 6 6 2.0563 1.4370 2.4950 7 6 2.9431 1.3863 -1.2493 8 6 3.5827 2.7486 -1.3258 9 8 3.2750 3.6086 -0.5279 10 7 4.4966 3.0113 -2.2808 11 6 4.8841 1.9779 -3.2508 12 6 6.4041 1.8272 -3.2366 13 6 7.0523 3.1921 -3.4793 14 7 8.5137 3.0437 -3.4958 15 6 8.9878 2.6501 -4.8293 16 6 10.4879 2.5085 -4.8074 17 8 11.1018 2.7155 -3.7820 18 7 11.1476 2.1517 -5.9273 19 6 12.5124 2.0234 -5.9076 20 1 13.0589 2.2077 -4.9945 21 6 13.1924 1.6561 -7.0622 22 7 12.5273 1.4314 -8.1731 23 14 15.0519 1.4805 -7.0352 24 1 15.4367 0.4415 -6.0464 25 1 15.5313 1.0821 -8.3831 26 1 15.6662 2.7778 -6.6544 27 6 6.6502 4.1558 -2.3604 28 6 5.1284 4.3349 -2.3685 29 1 -0.5399 -0.9354 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8501 -0.9353 0.0004 32 1 3.5572 2.2856 1.2035 33 1 3.5876 0.5084 1.2974 34 1 1.3831 0.5798 2.4968 35 1 2.6816 1.4098 3.3874 36 1 1.4726 2.3575 2.4882 37 1 3.7194 0.6228 -1.1972 38 1 2.3309 1.2220 -2.1360 39 1 4.4216 1.0293 -2.9783 40 1 4.5582 2.2724 -4.2483 41 1 6.7096 1.1347 -4.0210 42 1 6.7205 1.4414 -2.2674 43 1 6.7166 3.5882 -4.4377 44 1 8.8182 2.3851 -2.7947 45 1 8.5367 1.6981 -5.1089 46 1 8.7058 3.4129 -5.5550 47 1 10.6567 1.9865 -6.7475 48 1 13.0020 1.1746 -8.9791 49 1 7.1309 5.1208 -2.5213 50 1 6.9639 3.7490 -1.3991 51 1 4.8229 4.8252 -3.2928 52 1 4.8252 4.9418 -1.5155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202131184.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:33 Heat of formation + Delta-G solvation = -90.185585 kcal Electronic energy + Delta-G solvation = -29051.953854 eV Core-core repulsion = 25050.110996 eV Total energy + Delta-G solvation = -4001.842858 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.40387 -40.20737 -39.11028 -37.57503 -36.29348 -35.73475 -33.30558 -32.92017 -32.65147 -31.89301 -30.91900 -28.34610 -26.50295 -25.59827 -24.34415 -23.91211 -22.72584 -21.74536 -21.09111 -20.50887 -20.02116 -19.76106 -18.25825 -17.63996 -16.93902 -16.83718 -16.48308 -16.28038 -16.08696 -15.75636 -15.71942 -15.45056 -15.24841 -15.06450 -14.86490 -14.75709 -14.31470 -13.94645 -13.87673 -13.57828 -13.50238 -13.46724 -13.35832 -13.08551 -12.85053 -12.78728 -12.59409 -12.42674 -12.22937 -12.12657 -12.09606 -12.01395 -11.82720 -11.60971 -11.53836 -11.49972 -11.47681 -10.69916 -10.33592 -10.18759 -10.00830 -9.67635 -9.24192 -8.46122 -5.94693 1.40073 1.42269 1.43050 1.52805 1.65231 2.05721 2.06663 2.29633 2.91927 3.21325 3.50702 3.51799 3.74631 3.79928 3.94345 4.06823 4.09311 4.10001 4.24622 4.34374 4.35495 4.40348 4.42402 4.46640 4.49331 4.53624 4.60464 4.61495 4.68335 4.73571 4.80712 4.83831 4.92488 4.96898 5.02664 5.05146 5.10459 5.17547 5.20165 5.27011 5.39871 5.41406 5.43204 5.58397 5.79516 5.92587 5.96126 6.15202 6.40221 6.44596 6.61304 7.13507 7.20371 7.57480 8.13257 8.70826 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023679 B = 0.001741 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.179555 B =16078.193942 C =16290.075479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.147 4.147 3 C -0.044 4.044 4 H 0.063 0.937 5 C -0.118 4.118 6 C -0.146 4.146 7 C -0.129 4.129 8 C 0.510 3.490 9 O -0.581 6.581 10 N -0.612 5.612 11 C 0.112 3.888 12 C -0.162 4.162 13 C 0.091 3.909 14 N -0.680 5.680 15 C 0.068 3.932 16 C 0.435 3.565 17 O -0.626 6.626 18 N -0.572 5.572 19 C -0.336 4.336 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.991 3.009 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.274 1.274 27 C -0.113 4.113 28 C 0.116 3.884 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.122 0.878 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.043 0.957 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.091 0.909 44 H 0.342 0.658 45 H 0.072 0.928 46 H 0.104 0.896 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.076 0.924 50 H 0.050 0.950 51 H 0.082 0.918 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.764 -4.182 9.299 27.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.165 4.165 3 C -0.063 4.063 4 H 0.081 0.919 5 C -0.156 4.156 6 C -0.203 4.203 7 C -0.168 4.168 8 C 0.300 3.700 9 O -0.461 6.461 10 N -0.345 5.345 11 C -0.011 4.011 12 C -0.202 4.202 13 C -0.019 4.019 14 N -0.311 5.311 15 C -0.064 4.064 16 C 0.223 3.777 17 O -0.513 6.513 18 N -0.210 5.210 19 C -0.465 4.465 20 H 0.095 0.905 21 C -0.211 4.211 22 N -0.559 5.559 23 Si 0.815 3.185 24 H -0.197 1.197 25 H -0.194 1.194 26 H -0.199 1.199 27 C -0.152 4.152 28 C -0.007 4.007 29 H 0.129 0.871 30 H 0.109 0.891 31 H 0.140 0.860 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.128 0.872 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.080 0.920 43 H 0.109 0.891 44 H 0.161 0.839 45 H 0.090 0.910 46 H 0.122 0.878 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.094 0.906 50 H 0.069 0.931 51 H 0.101 0.899 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -25.316 -2.974 10.073 27.408 hybrid contribution 0.811 -0.788 -0.427 1.209 sum -24.505 -3.762 9.646 26.602 Atomic orbital electron populations 1.23998 0.95982 1.02282 1.00515 1.22899 0.95968 0.97582 1.00087 1.20098 0.96603 0.96010 0.93539 0.91877 1.21560 0.98072 1.01569 0.94388 1.21712 0.99772 1.01557 0.97293 1.21782 1.00692 0.93457 1.00873 1.21234 0.78774 0.90827 0.79188 1.90664 1.63771 1.49862 1.41820 1.48299 1.40754 1.13810 1.31611 1.21807 0.94196 0.91975 0.93104 1.22574 0.96404 0.98262 1.02990 1.21647 0.85476 0.95089 0.99680 1.60142 1.11105 1.55185 1.04698 1.21547 0.90170 1.01603 0.93114 1.20987 0.91062 0.82002 0.83642 1.90499 1.70655 1.56646 1.33496 1.41921 1.07104 1.60753 1.11184 1.19617 0.83461 1.45847 0.97601 0.90482 1.26003 1.04755 0.96233 0.94149 1.69657 1.38238 1.46858 1.01176 0.85013 0.76994 0.78753 0.77724 1.19735 1.19421 1.19896 1.21788 0.94590 1.00432 0.98358 1.21545 0.91569 0.84544 1.03036 0.87146 0.89117 0.85972 0.93117 0.91504 0.91857 0.92821 0.93805 0.86967 0.86612 0.87182 0.89253 0.89511 0.91961 0.89115 0.83868 0.91048 0.87845 0.76888 0.91283 0.90565 0.93100 0.89933 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.97 14.32 67.77 0.97 -1.00 16 2 C -0.15 -1.59 7.69 25.64 0.20 -1.39 16 3 C -0.04 -0.63 1.79 -11.54 -0.02 -0.66 16 4 H 0.06 1.18 7.47 -2.39 -0.02 1.16 16 5 C -0.12 -2.01 5.20 30.60 0.16 -1.85 16 6 C -0.15 -2.30 9.80 71.98 0.71 -1.60 16 7 C -0.13 -1.57 3.58 29.85 0.11 -1.47 16 8 C 0.51 9.88 7.26 87.66 0.64 10.52 16 9 O -0.58 -15.99 13.71 -3.02 -0.04 -16.03 16 10 N -0.61 -10.22 2.98 -819.68 -2.44 -12.66 16 11 C 0.11 1.25 6.31 86.22 0.54 1.79 16 12 C -0.16 -2.50 5.31 30.53 0.16 -2.34 16 13 C 0.09 1.85 2.43 44.94 0.11 1.96 16 14 N -0.68 -20.10 5.87 -495.45 -2.91 -23.01 16 15 C 0.07 2.16 5.96 85.56 0.51 2.67 16 16 C 0.44 20.24 7.82 87.66 0.69 20.93 16 17 O -0.63 -34.54 15.78 -3.09 -0.05 -34.59 16 18 N -0.57 -28.79 5.29 -306.98 -1.62 -30.41 16 19 C -0.34 -18.91 9.68 84.04 0.81 -18.10 16 20 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 21 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 22 N -0.92 -48.74 13.05 21.66 0.28 -48.46 16 23 Si 0.99 42.55 29.55 68.60 2.03 44.58 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 C -0.11 -2.37 5.69 30.69 0.17 -2.20 16 28 C 0.12 2.17 6.44 86.37 0.56 2.73 16 29 H 0.11 0.84 8.06 -2.91 -0.02 0.82 16 30 H 0.09 1.02 7.83 -2.91 -0.02 1.00 16 31 H 0.12 1.01 8.06 -2.91 -0.02 0.99 16 32 H 0.05 1.15 6.18 -2.39 -0.01 1.13 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 0.86 7.24 -2.39 -0.02 0.84 16 35 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.11 0.98 7.37 -2.39 -0.02 0.96 16 38 H 0.12 0.96 8.13 -2.39 -0.02 0.94 16 39 H 0.11 0.72 5.88 -2.39 -0.01 0.71 16 40 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.09 1.24 7.42 -2.39 -0.02 1.22 16 42 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.09 1.67 7.80 -2.39 -0.02 1.65 16 44 H 0.34 10.95 8.18 -89.70 -0.73 10.22 16 45 H 0.07 1.89 7.41 -2.39 -0.02 1.88 16 46 H 0.10 2.96 8.05 -2.39 -0.02 2.94 16 47 H 0.40 18.78 7.90 -92.71 -0.73 18.04 16 48 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 49 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 51 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 52 H 0.08 1.72 7.00 -2.39 -0.02 1.70 16 Total: -1.00 -71.82 412.93 1.47 -70.35 By element: Atomic # 1 Polarization: 40.94 SS G_CDS: -0.55 Total: 40.38 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 6.78 Total: 9.86 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -6.69 Total: -114.55 kcal Atomic # 8 Polarization: -50.54 SS G_CDS: -0.09 Total: -50.63 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -71.82 1.47 -70.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202131184.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.839 kcal (2) G-P(sol) polarization free energy of solvation -71.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds