Wall clock time and date at job start Tue Mar 31 2020 19:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46895 * 2 1 4 4 C 1.50696 * 109.46848 * 119.99784 * 2 1 3 5 5 O 1.21280 * 119.99807 * 239.99907 * 4 2 1 6 6 N 1.34774 * 120.00426 * 60.00660 * 4 2 1 7 7 C 1.46508 * 119.99513 * 359.97438 * 6 4 2 8 8 C 1.46492 * 120.00560 * 180.02562 * 6 4 2 9 9 C 1.50701 * 109.46874 * 269.99894 * 8 6 4 10 10 O 1.21280 * 120.00251 * 359.97438 * 9 8 6 11 11 N 1.34779 * 120.00066 * 180.02562 * 9 8 6 12 12 C 1.46500 * 119.99907 * 179.97438 * 11 9 8 13 13 H 1.09000 * 112.88687 * 333.15138 * 12 11 9 14 14 C 1.53945 * 113.66645 * 104.50282 * 12 11 9 15 15 C 1.53957 * 87.29527 * 89.73354 * 14 12 11 16 16 H 1.08997 * 113.65822 * 139.20712 * 15 14 12 17 17 N 1.46500 * 113.66452 * 270.26429 * 15 14 12 18 18 C 1.36930 * 120.00101 * 255.49811 * 17 15 14 19 19 H 1.08000 * 120.00135 * 359.97438 * 18 17 15 20 20 C 1.38814 * 119.99954 * 180.02562 * 18 17 15 21 21 N 1.31607 * 120.00190 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99759 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47134 * 90.00201 * 22 20 18 24 24 H 1.48504 * 109.46937 * 209.99961 * 22 20 18 25 25 H 1.48497 * 109.47217 * 329.99799 * 22 20 18 26 26 C 1.52906 * 86.77902 * 24.73921 * 15 14 12 27 27 C 1.52911 * 121.13708 * 209.38067 * 26 15 14 28 28 C 1.53953 * 86.78498 * 209.37459 * 27 26 15 29 29 C 1.52908 * 121.14322 * 100.81952 * 26 15 14 30 30 H 1.09002 * 109.46869 * 60.00358 * 1 2 3 31 31 H 1.08999 * 109.47226 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47584 * 299.99946 * 1 2 3 33 33 H 1.09000 * 109.47214 * 239.99876 * 2 1 3 34 34 H 1.09001 * 109.47196 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47070 * 299.99519 * 3 2 1 36 36 H 1.09000 * 109.47291 * 59.99923 * 3 2 1 37 37 H 1.08998 * 109.46741 * 270.00392 * 7 6 4 38 38 H 1.09004 * 109.47158 * 30.00273 * 7 6 4 39 39 H 1.09001 * 109.46809 * 150.00422 * 7 6 4 40 40 H 1.09002 * 109.47698 * 149.99670 * 8 6 4 41 41 H 1.09004 * 109.47126 * 29.99321 * 8 6 4 42 42 H 0.97003 * 120.00216 * 359.97438 * 11 9 8 43 43 H 1.09004 * 113.57802 * 335.13238 * 14 12 11 44 44 H 1.08996 * 113.58495 * 204.34094 * 14 12 11 45 45 H 0.96999 * 119.99920 * 75.49149 * 17 15 14 46 46 H 0.96997 * 120.00331 * 180.02562 * 21 20 18 47 47 H 1.09001 * 113.66341 * 323.84544 * 27 26 15 48 48 H 1.08996 * 113.66624 * 94.90194 * 27 26 15 49 49 H 1.09002 * 113.58246 * 270.13531 * 28 27 26 50 50 H 1.08997 * 113.65416 * 139.34277 * 28 27 26 51 51 H 1.09003 * 113.66175 * 265.09643 * 29 26 15 52 52 H 1.09004 * 113.66268 * 36.05302 * 29 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.7295 -0.1209 2.0288 6 7 1.7068 -2.0007 1.4438 7 6 0.8642 -2.7126 0.4796 8 6 2.1945 -2.6911 2.6402 9 6 3.5223 -3.3379 2.3407 10 8 4.0126 -3.2329 1.2364 11 7 4.1645 -4.0339 3.2997 12 6 5.4550 -4.6632 3.0083 13 1 5.5773 -4.9110 1.9539 14 6 6.6576 -3.9143 3.6105 15 6 6.4768 -4.7842 4.8677 16 1 7.4162 -5.1301 5.2991 17 7 5.5724 -4.2006 5.8615 18 6 6.0802 -3.6308 6.9984 19 1 7.1475 -3.6120 7.1626 20 6 5.2231 -3.0783 7.9403 21 7 3.9225 -3.1017 7.7404 22 14 5.9159 -2.3016 9.4915 23 1 6.1777 -0.8602 9.2490 24 1 4.9363 -2.4475 10.5981 25 1 7.1843 -2.9799 9.8607 26 6 5.8057 -5.8114 3.9553 27 6 4.7266 -6.7555 4.4868 28 6 5.2019 -7.7591 3.4205 29 6 6.5640 -7.0427 3.4583 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 -0.1837 -2.5924 0.7547 38 1 1.0274 -2.3032 -0.5174 39 1 1.1219 -3.7717 0.4843 40 1 1.4765 -3.4558 2.9367 41 1 2.3152 -1.9723 3.4507 42 1 3.7722 -4.1183 4.1828 43 1 6.4695 -2.8545 3.7828 44 1 7.5941 -4.0982 3.0839 45 1 4.6138 -4.2178 5.7141 46 1 3.3237 -2.7153 8.3983 47 1 4.9018 -7.0884 5.5098 48 1 3.7110 -6.3941 4.3255 49 1 4.6836 -7.6602 2.4667 50 1 5.2409 -8.7889 3.7757 51 1 7.0163 -6.9106 2.4754 52 1 7.2568 -7.4553 4.1917 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202988225.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:52 Heat of formation + Delta-G solvation = -8.053212 kcal Electronic energy + Delta-G solvation = -31006.663124 eV Core-core repulsion = 27008.381793 eV Total energy + Delta-G solvation = -3998.281332 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.71483 -40.15417 -38.44408 -35.54104 -35.20406 -34.53975 -33.59320 -32.28690 -29.92469 -28.83939 -27.14839 -26.62743 -25.48391 -24.60988 -24.06880 -23.24312 -22.30587 -20.32468 -19.99755 -19.07545 -18.20824 -17.23696 -17.17855 -16.82628 -16.22066 -15.54162 -15.28905 -15.23726 -14.73694 -14.62766 -14.43536 -14.20138 -13.85405 -13.56679 -13.17834 -13.02646 -12.89540 -12.70560 -12.56491 -12.46230 -12.41335 -12.14687 -12.00630 -11.88574 -11.62255 -11.52832 -11.36213 -11.18286 -11.15979 -10.93492 -10.86285 -10.67145 -10.20941 -10.09546 -9.89897 -9.77401 -9.68789 -9.61991 -9.34276 -8.85429 -8.61974 -8.48297 -7.02232 -5.84734 -3.12383 2.62558 2.87599 2.94280 3.42050 3.47571 3.48411 3.60430 4.38424 4.52064 4.71518 4.75614 4.81016 4.89657 4.92227 4.97173 5.08686 5.10239 5.17012 5.21750 5.32461 5.37177 5.42275 5.44723 5.46581 5.59695 5.61131 5.63026 5.71026 5.78538 5.85799 5.91175 5.96378 6.00125 6.02235 6.08595 6.12295 6.16442 6.28969 6.30008 6.34573 6.41794 6.63840 6.72128 6.77121 6.97504 7.14444 7.32329 7.68051 7.91083 8.22703 8.35020 8.57682 9.46045 10.00858 10.34782 11.38271 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009510 B = 0.003742 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.623776 B = 7480.632164 C = 9455.087064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 C -0.132 4.132 4 C 0.520 3.480 5 O -0.529 6.529 6 N -0.599 5.599 7 C 0.082 3.918 8 C 0.094 3.906 9 C 0.503 3.497 10 O -0.546 6.546 11 N -0.696 5.696 12 C 0.154 3.846 13 H 0.088 0.912 14 C -0.187 4.187 15 C 0.180 3.820 16 H 0.063 0.937 17 N -0.699 5.699 18 C -0.241 4.241 19 H 0.072 0.928 20 C -0.009 4.009 21 N -0.934 5.934 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.130 4.130 27 C -0.115 4.115 28 C -0.141 4.141 29 C -0.104 4.104 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.107 0.893 41 H 0.119 0.881 42 H 0.408 0.592 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.379 0.621 46 H 0.256 0.744 47 H 0.087 0.913 48 H 0.061 0.939 49 H 0.073 0.927 50 H 0.062 0.938 51 H 0.064 0.936 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.708 -3.291 -16.323 18.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.133 4.133 3 C -0.190 4.190 4 C 0.308 3.692 5 O -0.404 6.404 6 N -0.332 5.332 7 C -0.061 4.061 8 C -0.033 4.033 9 C 0.288 3.712 10 O -0.424 6.424 11 N -0.349 5.349 12 C 0.049 3.951 13 H 0.106 0.894 14 C -0.229 4.229 15 C 0.068 3.932 16 H 0.081 0.919 17 N -0.339 5.339 18 C -0.372 4.372 19 H 0.090 0.910 20 C -0.205 4.205 21 N -0.582 5.582 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.133 4.133 27 C -0.153 4.153 28 C -0.178 4.178 29 C -0.142 4.142 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.125 0.875 41 H 0.137 0.863 42 H 0.245 0.755 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.214 0.786 46 H 0.066 0.934 47 H 0.106 0.894 48 H 0.080 0.920 49 H 0.091 0.909 50 H 0.081 0.919 51 H 0.083 0.917 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.924 -2.811 -16.484 18.099 hybrid contribution -0.119 0.371 1.211 1.272 sum -7.043 -2.440 -15.274 16.995 Atomic orbital electron populations 1.22059 0.93079 1.03361 1.02826 1.21254 0.97491 0.97921 0.96590 1.21613 1.01994 0.93475 1.01927 1.20717 0.79632 0.81159 0.87670 1.90744 1.37014 1.65819 1.46803 1.47347 1.51278 1.11125 1.23457 1.21943 0.93726 0.97775 0.92653 1.21326 0.93784 0.98625 0.89528 1.21031 0.87098 0.78322 0.84781 1.90636 1.68263 1.60334 1.23145 1.45704 1.21277 1.52800 1.15082 1.21366 0.83423 0.92578 0.97769 0.89432 1.24294 0.96564 1.01488 1.00576 1.21032 0.93624 0.90596 0.87940 0.91854 1.42061 1.04560 1.67932 1.19328 1.19263 0.92263 1.29939 0.95713 0.90957 1.24701 0.95337 1.01510 0.98987 1.69603 1.01235 1.50751 1.36579 0.86173 0.77723 0.79303 0.82877 1.21672 1.21777 1.20755 1.23400 0.98466 0.93246 0.98148 1.22509 0.98028 0.95902 0.98828 1.22851 0.97280 0.98220 0.99470 1.22484 0.96234 0.94634 1.00879 0.91582 0.91079 0.92069 0.88542 0.91898 0.92170 0.91894 0.92120 0.90693 0.91146 0.87521 0.86314 0.75459 0.90937 0.90669 0.78574 0.93399 0.89425 0.92046 0.90864 0.91938 0.91714 0.89635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 8.83 37.16 0.33 -0.88 16 2 C -0.11 -1.19 2.45 -91.77 -0.23 -1.42 16 3 C -0.13 -1.44 8.48 37.16 0.32 -1.13 16 4 C 0.52 7.87 7.07 -10.99 -0.08 7.79 16 5 O -0.53 -10.50 15.56 5.56 0.09 -10.41 16 6 N -0.60 -7.95 2.36 -182.95 -0.43 -8.38 16 7 C 0.08 0.72 8.80 59.85 0.53 1.25 16 8 C 0.09 1.37 5.89 -5.20 -0.03 1.34 16 9 C 0.50 8.79 7.90 -10.98 -0.09 8.70 16 10 O -0.55 -10.95 16.07 5.56 0.09 -10.86 16 11 N -0.70 -12.12 4.71 -53.37 -0.25 -12.37 16 12 C 0.15 2.66 4.08 -67.48 -0.28 2.38 16 13 H 0.09 1.53 7.54 -51.93 -0.39 1.14 16 14 C -0.19 -3.52 7.68 -25.75 -0.20 -3.72 16 15 C 0.18 3.53 4.35 -67.48 -0.29 3.23 16 16 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16 17 N -0.70 -16.56 4.97 -52.99 -0.26 -16.82 16 18 C -0.24 -6.49 9.98 -15.06 -0.15 -6.64 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 21 N -0.93 -26.80 13.06 55.49 0.72 -26.08 16 22 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 C -0.13 -2.08 0.77 -154.71 -0.12 -2.20 16 27 C -0.12 -1.75 7.18 -26.28 -0.19 -1.93 16 28 C -0.14 -1.77 8.08 -25.75 -0.21 -1.98 16 29 C -0.10 -1.37 7.84 -26.28 -0.21 -1.58 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.46 4.53 -51.93 -0.24 0.23 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.10 0.92 7.40 -51.93 -0.38 0.53 16 34 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.06 0.39 6.95 -51.93 -0.36 0.03 16 38 H 0.07 0.57 6.01 -51.93 -0.31 0.26 16 39 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 40 H 0.11 1.17 8.07 -51.93 -0.42 0.76 16 41 H 0.12 1.98 7.42 -51.93 -0.39 1.59 16 42 H 0.41 7.35 5.92 -40.82 -0.24 7.11 16 43 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 44 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.38 9.15 5.39 -40.82 -0.22 8.93 16 46 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 47 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 48 H 0.06 0.93 7.50 -51.93 -0.39 0.54 16 49 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 51 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 52 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 409.18 15.07 6.17 6.17 Total: -1.00 -33.75 409.18 -8.68 -42.43 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: -8.80 Total: 16.32 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -0.98 Total: 2.87 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: -0.22 Total: -63.65 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: 0.18 Total: -21.28 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.75 -8.68 -42.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202988225.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.377 kcal (2) G-P(sol) polarization free energy of solvation -33.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds