Wall clock time and date at job start Tue Mar 31 2020 19:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46895 * 2 1 4 4 C 1.50696 * 109.46848 * 119.99784 * 2 1 3 5 5 O 1.21280 * 119.99807 * 239.99907 * 4 2 1 6 6 N 1.34774 * 120.00426 * 60.00660 * 4 2 1 7 7 C 1.46508 * 119.99513 * 359.97438 * 6 4 2 8 8 C 1.46492 * 120.00560 * 180.02562 * 6 4 2 9 9 C 1.50701 * 109.46874 * 269.99894 * 8 6 4 10 10 O 1.21280 * 120.00251 * 359.97438 * 9 8 6 11 11 N 1.34779 * 120.00066 * 180.02562 * 9 8 6 12 12 C 1.46500 * 119.99907 * 179.97438 * 11 9 8 13 13 H 1.09000 * 112.88687 * 333.15138 * 12 11 9 14 14 C 1.53945 * 113.66645 * 104.50282 * 12 11 9 15 15 C 1.53957 * 87.29527 * 89.73354 * 14 12 11 16 16 H 1.08997 * 113.65822 * 139.20712 * 15 14 12 17 17 N 1.46500 * 113.66452 * 270.26429 * 15 14 12 18 18 C 1.36930 * 120.00101 * 255.49811 * 17 15 14 19 19 H 1.08000 * 120.00135 * 359.97438 * 18 17 15 20 20 C 1.38814 * 119.99954 * 180.02562 * 18 17 15 21 21 N 1.31607 * 120.00190 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99759 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47134 * 90.00201 * 22 20 18 24 24 H 1.48504 * 109.46937 * 209.99961 * 22 20 18 25 25 H 1.48497 * 109.47217 * 329.99799 * 22 20 18 26 26 C 1.52906 * 86.77902 * 24.73921 * 15 14 12 27 27 C 1.52911 * 121.13708 * 209.38067 * 26 15 14 28 28 C 1.53953 * 86.78498 * 209.37459 * 27 26 15 29 29 C 1.52908 * 121.14322 * 100.81952 * 26 15 14 30 30 H 1.09002 * 109.46869 * 60.00358 * 1 2 3 31 31 H 1.08999 * 109.47226 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47584 * 299.99946 * 1 2 3 33 33 H 1.09000 * 109.47214 * 239.99876 * 2 1 3 34 34 H 1.09001 * 109.47196 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47070 * 299.99519 * 3 2 1 36 36 H 1.09000 * 109.47291 * 59.99923 * 3 2 1 37 37 H 1.08998 * 109.46741 * 270.00392 * 7 6 4 38 38 H 1.09004 * 109.47158 * 30.00273 * 7 6 4 39 39 H 1.09001 * 109.46809 * 150.00422 * 7 6 4 40 40 H 1.09002 * 109.47698 * 149.99670 * 8 6 4 41 41 H 1.09004 * 109.47126 * 29.99321 * 8 6 4 42 42 H 0.97003 * 120.00216 * 359.97438 * 11 9 8 43 43 H 1.09004 * 113.57802 * 335.13238 * 14 12 11 44 44 H 1.08996 * 113.58495 * 204.34094 * 14 12 11 45 45 H 0.96999 * 119.99920 * 75.49149 * 17 15 14 46 46 H 0.96997 * 120.00331 * 180.02562 * 21 20 18 47 47 H 1.09001 * 113.66341 * 323.84544 * 27 26 15 48 48 H 1.08996 * 113.66624 * 94.90194 * 27 26 15 49 49 H 1.09002 * 113.58246 * 270.13531 * 28 27 26 50 50 H 1.08997 * 113.65416 * 139.34277 * 28 27 26 51 51 H 1.09003 * 113.66175 * 265.09643 * 29 26 15 52 52 H 1.09004 * 113.66268 * 36.05302 * 29 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.7295 -0.1209 2.0288 6 7 1.7068 -2.0007 1.4438 7 6 0.8642 -2.7126 0.4796 8 6 2.1945 -2.6911 2.6402 9 6 3.5223 -3.3379 2.3407 10 8 4.0126 -3.2329 1.2364 11 7 4.1645 -4.0339 3.2997 12 6 5.4550 -4.6632 3.0083 13 1 5.5773 -4.9110 1.9539 14 6 6.6576 -3.9143 3.6105 15 6 6.4768 -4.7842 4.8677 16 1 7.4162 -5.1301 5.2991 17 7 5.5724 -4.2006 5.8615 18 6 6.0802 -3.6308 6.9984 19 1 7.1475 -3.6120 7.1626 20 6 5.2231 -3.0783 7.9403 21 7 3.9225 -3.1017 7.7404 22 14 5.9159 -2.3016 9.4915 23 1 6.1777 -0.8602 9.2490 24 1 4.9363 -2.4475 10.5981 25 1 7.1843 -2.9799 9.8607 26 6 5.8057 -5.8114 3.9553 27 6 4.7266 -6.7555 4.4868 28 6 5.2019 -7.7591 3.4205 29 6 6.5640 -7.0427 3.4583 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 -0.1837 -2.5924 0.7547 38 1 1.0274 -2.3032 -0.5174 39 1 1.1219 -3.7717 0.4843 40 1 1.4765 -3.4558 2.9367 41 1 2.3152 -1.9723 3.4507 42 1 3.7722 -4.1183 4.1828 43 1 6.4695 -2.8545 3.7828 44 1 7.5941 -4.0982 3.0839 45 1 4.6138 -4.2178 5.7141 46 1 3.3237 -2.7153 8.3983 47 1 4.9018 -7.0884 5.5098 48 1 3.7110 -6.3941 4.3255 49 1 4.6836 -7.6602 2.4667 50 1 5.2409 -8.7889 3.7757 51 1 7.0163 -6.9106 2.4754 52 1 7.2568 -7.4553 4.1917 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202988225.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:51 Heat of formation + Delta-G solvation = -29.874321 kcal Electronic energy + Delta-G solvation = -31007.609359 eV Core-core repulsion = 27008.381793 eV Total energy + Delta-G solvation = -3999.227566 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.07534 -41.32349 -39.80750 -36.77269 -36.55646 -35.46985 -35.32878 -33.90512 -31.77919 -29.97591 -27.96222 -27.52037 -26.83298 -26.19805 -25.38694 -24.68743 -23.52614 -21.70508 -21.35721 -20.19494 -19.67496 -18.93282 -18.30807 -18.16308 -17.38825 -16.87164 -16.78785 -16.37333 -16.28220 -15.87511 -15.81281 -15.53325 -15.04584 -14.93512 -14.73695 -14.35992 -13.91874 -13.90723 -13.71587 -13.56468 -13.27908 -13.22252 -13.14853 -13.09430 -12.91093 -12.84605 -12.77945 -12.72954 -12.54533 -12.18712 -12.02532 -11.97410 -11.89201 -11.84601 -11.34842 -11.24445 -11.04838 -10.85423 -10.78733 -10.66675 -9.93529 -9.74420 -8.98835 -7.97022 -5.23156 1.44209 1.45648 1.47639 1.54544 1.56190 1.82587 2.31190 2.54842 3.35256 3.39419 3.47678 3.58412 3.72086 3.82250 3.91817 3.94649 4.02392 4.03619 4.11892 4.18706 4.21125 4.27978 4.33660 4.49947 4.55289 4.64207 4.66517 4.75223 4.76555 4.80714 4.84862 4.88321 4.96074 4.97821 4.99367 5.04450 5.08736 5.13699 5.19044 5.20232 5.25310 5.33654 5.35170 5.50208 5.54107 5.63498 5.66806 6.26858 6.29814 6.48057 7.08888 7.16735 7.33940 8.07593 8.31945 9.25963 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009510 B = 0.003742 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.623776 B = 7480.632164 C = 9455.087064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C -0.132 4.132 4 C 0.505 3.495 5 O -0.593 6.593 6 N -0.597 5.597 7 C 0.072 3.928 8 C 0.095 3.905 9 C 0.500 3.500 10 O -0.573 6.573 11 N -0.696 5.696 12 C 0.157 3.843 13 H 0.093 0.907 14 C -0.185 4.185 15 C 0.165 3.835 16 H 0.062 0.938 17 N -0.708 5.708 18 C -0.244 4.244 19 H 0.072 0.928 20 C -0.065 4.065 21 N -0.961 5.961 22 Si 0.966 3.034 23 H -0.296 1.296 24 H -0.293 1.293 25 H -0.270 1.270 26 C -0.118 4.118 27 C -0.121 4.121 28 C -0.123 4.123 29 C -0.096 4.096 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.115 0.885 34 H 0.036 0.964 35 H 0.093 0.907 36 H 0.045 0.955 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.146 0.854 41 H 0.091 0.909 42 H 0.404 0.596 43 H 0.031 0.969 44 H 0.099 0.901 45 H 0.375 0.625 46 H 0.252 0.748 47 H 0.072 0.928 48 H 0.057 0.943 49 H 0.083 0.917 50 H 0.082 0.918 51 H 0.081 0.919 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.581 -5.109 -18.341 20.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 C -0.190 4.190 4 C 0.295 3.705 5 O -0.473 6.473 6 N -0.329 5.329 7 C -0.068 4.068 8 C -0.032 4.032 9 C 0.286 3.714 10 O -0.453 6.453 11 N -0.348 5.348 12 C 0.051 3.949 13 H 0.111 0.889 14 C -0.227 4.227 15 C 0.055 3.945 16 H 0.080 0.920 17 N -0.347 5.347 18 C -0.376 4.376 19 H 0.090 0.910 20 C -0.258 4.258 21 N -0.611 5.611 22 Si 0.796 3.204 23 H -0.224 1.224 24 H -0.219 1.219 25 H -0.195 1.195 26 C -0.120 4.120 27 C -0.159 4.159 28 C -0.161 4.161 29 C -0.134 4.134 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.133 0.867 34 H 0.055 0.945 35 H 0.112 0.888 36 H 0.065 0.935 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.163 0.837 41 H 0.109 0.891 42 H 0.241 0.759 43 H 0.050 0.950 44 H 0.117 0.883 45 H 0.209 0.791 46 H 0.061 0.939 47 H 0.091 0.909 48 H 0.076 0.924 49 H 0.101 0.899 50 H 0.100 0.900 51 H 0.100 0.900 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.794 -4.683 -18.546 20.655 hybrid contribution 0.213 0.935 1.795 2.035 sum -7.581 -3.748 -16.751 18.765 Atomic orbital electron populations 1.22057 0.90284 1.04752 1.03519 1.21344 0.99647 0.96999 0.94699 1.21625 1.00373 0.94241 1.02721 1.21699 0.78736 0.81677 0.88345 1.90709 1.40007 1.67361 1.49182 1.47561 1.50893 1.10853 1.23551 1.22304 0.94511 0.97609 0.92416 1.21319 0.93454 0.98711 0.89708 1.21541 0.87833 0.77726 0.84265 1.90607 1.69154 1.61355 1.24185 1.45774 1.21355 1.52786 1.14847 1.21364 0.82669 0.92700 0.98156 0.88926 1.24258 0.98718 0.98856 1.00830 1.21257 0.93452 0.92182 0.87655 0.92034 1.42135 1.04902 1.68215 1.19487 1.19585 0.92334 1.29100 0.96555 0.91000 1.25386 0.95760 1.02856 1.01791 1.69726 1.02053 1.52028 1.37277 0.85259 0.77447 0.77965 0.79779 1.22365 1.21916 1.19513 1.23300 0.99294 0.93148 0.96289 1.22513 0.97570 0.96763 0.99009 1.22775 0.96129 0.98466 0.98685 1.22546 0.96756 0.92298 1.01835 0.88962 0.89355 0.93283 0.86694 0.94490 0.88801 0.93550 0.89019 0.89015 0.90721 0.83684 0.89093 0.75893 0.94963 0.88276 0.79099 0.93943 0.90936 0.92402 0.89890 0.89974 0.90022 0.88773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.83 71.98 0.64 -1.27 16 2 C -0.11 -2.14 2.45 -11.54 -0.03 -2.17 16 3 C -0.13 -2.87 8.48 71.98 0.61 -2.26 16 4 C 0.51 15.56 7.07 87.66 0.62 16.18 16 5 O -0.59 -25.14 15.56 -3.03 -0.05 -25.18 16 6 N -0.60 -15.52 2.36 -851.13 -2.01 -17.53 16 7 C 0.07 1.08 8.80 127.77 1.12 2.20 16 8 C 0.10 2.82 5.89 85.63 0.50 3.32 16 9 C 0.50 17.78 7.90 87.66 0.69 18.47 16 10 O -0.57 -23.15 16.07 -3.03 -0.05 -23.20 16 11 N -0.70 -24.73 4.71 -441.15 -2.08 -26.81 16 12 C 0.16 5.36 4.08 45.28 0.18 5.55 16 13 H 0.09 3.12 7.54 -2.39 -0.02 3.10 16 14 C -0.18 -7.05 7.68 31.23 0.24 -6.81 16 15 C 0.17 6.51 4.35 45.28 0.20 6.70 16 16 H 0.06 2.43 8.12 -2.39 -0.02 2.41 16 17 N -0.71 -34.42 4.97 -321.56 -1.60 -36.01 16 18 C -0.24 -13.41 9.98 84.04 0.84 -12.58 16 19 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 20 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 21 N -0.96 -56.65 13.06 21.65 0.28 -56.37 16 22 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 23 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 25 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 26 C -0.12 -3.65 0.77 -52.31 -0.04 -3.69 16 27 C -0.12 -3.52 7.18 30.89 0.22 -3.30 16 28 C -0.12 -2.70 8.08 31.23 0.25 -2.45 16 29 C -0.10 -2.26 7.84 30.88 0.24 -2.01 16 30 H 0.09 0.74 8.14 -2.39 -0.02 0.73 16 31 H 0.09 0.81 4.53 -2.39 -0.01 0.80 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.12 1.91 7.40 -2.39 -0.02 1.90 16 34 H 0.04 0.97 8.10 -2.39 -0.02 0.95 16 35 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 37 H 0.09 0.84 6.95 -2.39 -0.02 0.82 16 38 H 0.09 1.08 6.01 -2.39 -0.01 1.06 16 39 H 0.07 1.09 8.07 -2.39 -0.02 1.07 16 40 H 0.15 3.05 8.07 -2.39 -0.02 3.03 16 41 H 0.09 3.25 7.42 -2.38 -0.02 3.23 16 42 H 0.40 15.08 5.92 -92.71 -0.55 14.53 16 43 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.10 3.24 8.14 -2.39 -0.02 3.23 16 45 H 0.37 18.70 5.39 -92.71 -0.50 18.20 16 46 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 47 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 48 H 0.06 1.71 7.50 -2.39 -0.02 1.69 16 49 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 51 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 52 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -77.52 409.18 3.16 -74.36 By element: Atomic # 1 Polarization: 49.77 SS G_CDS: -0.12 Total: 49.65 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 6.76 Total: 12.69 kcal Atomic # 7 Polarization: -131.31 SS G_CDS: -5.41 Total: -136.72 kcal Atomic # 8 Polarization: -48.29 SS G_CDS: -0.10 Total: -48.39 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -77.52 3.16 -74.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202988225.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.482 kcal (2) G-P(sol) polarization free energy of solvation -77.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds