Wall clock time and date at job start Tue Mar 31 2020 19:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47372 * 2 1 4 4 C 1.50697 * 109.47119 * 120.00120 * 2 1 3 5 5 O 1.21278 * 120.00271 * 330.61210 * 4 2 1 6 6 N 1.34781 * 120.00073 * 150.61356 * 4 2 1 7 7 C 1.46491 * 120.00216 * 183.51392 * 6 4 2 8 8 C 1.46505 * 119.99516 * 3.50976 * 6 4 2 9 9 C 1.50704 * 109.46889 * 93.08206 * 8 6 4 10 10 O 1.21281 * 119.99985 * 359.97438 * 9 8 6 11 11 N 1.34777 * 120.00131 * 179.97438 * 9 8 6 12 12 C 1.46492 * 120.00199 * 179.97438 * 11 9 8 13 13 H 1.09001 * 112.95282 * 23.58906 * 12 11 9 14 14 C 1.53948 * 113.66106 * 252.18573 * 12 11 9 15 15 C 1.53955 * 87.29424 * 220.79123 * 14 12 11 16 16 H 1.08998 * 113.66200 * 270.25852 * 15 14 12 17 17 N 1.46507 * 113.65958 * 139.20384 * 15 14 12 18 18 C 1.36937 * 119.99956 * 107.81357 * 17 15 14 19 19 H 1.08007 * 119.99671 * 0.02562 * 18 17 15 20 20 C 1.38811 * 120.00153 * 179.97438 * 18 17 15 21 21 N 1.31622 * 119.99909 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99885 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47356 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46810 * 120.00764 * 22 20 18 25 25 H 1.48501 * 109.47101 * 240.00097 * 22 20 18 26 26 C 1.52902 * 86.78107 * 24.73473 * 15 14 12 27 27 C 1.52914 * 121.13836 * 100.81750 * 26 15 14 28 28 C 1.53952 * 86.78110 * 100.81719 * 27 26 15 29 29 C 1.52908 * 121.13832 * 209.37851 * 26 15 14 30 30 H 1.09004 * 109.46737 * 299.99824 * 1 2 3 31 31 H 1.08994 * 109.47479 * 59.99797 * 1 2 3 32 32 H 1.09004 * 109.47265 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46737 * 240.00176 * 2 1 3 34 34 H 1.08999 * 109.46805 * 294.37923 * 3 2 1 35 35 H 1.09004 * 109.46971 * 54.37100 * 3 2 1 36 36 H 1.08997 * 109.47149 * 174.37805 * 3 2 1 37 37 H 1.08996 * 109.47584 * 275.09956 * 7 6 4 38 38 H 1.09004 * 109.47033 * 35.10376 * 7 6 4 39 39 H 1.09002 * 109.47603 * 155.09715 * 7 6 4 40 40 H 1.08992 * 109.47741 * 333.07802 * 8 6 4 41 41 H 1.08998 * 109.46946 * 213.07383 * 8 6 4 42 42 H 0.97003 * 119.99641 * 359.97438 * 11 9 8 43 43 H 1.09001 * 113.58139 * 335.39609 * 14 12 11 44 44 H 1.08999 * 113.58076 * 106.19299 * 14 12 11 45 45 H 0.96998 * 119.99900 * 287.81733 * 17 15 14 46 46 H 0.97000 * 119.99935 * 179.97438 * 21 20 18 47 47 H 1.09001 * 113.65988 * 215.29100 * 27 26 15 48 48 H 1.08996 * 113.66388 * 346.34745 * 27 26 15 49 49 H 1.08992 * 113.58008 * 270.13149 * 28 27 26 50 50 H 1.09000 * 113.57658 * 139.33425 * 28 27 26 51 51 H 1.09004 * 113.65833 * 13.64965 * 29 26 15 52 52 H 1.08998 * 113.66649 * 144.70273 * 29 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.3717 -0.7025 2.2474 6 7 3.2158 -1.3546 1.2007 7 6 3.6685 -2.1096 2.3716 8 6 4.0495 -1.2998 -0.0028 9 6 5.0323 -0.1637 0.1183 10 8 5.0356 0.5320 1.1117 11 7 5.9075 0.0793 -0.8774 12 6 6.8624 1.1839 -0.7600 13 1 7.0610 1.4660 0.2740 14 6 6.5402 2.3790 -1.6754 15 6 8.0509 2.4784 -1.9551 16 1 8.5835 3.1243 -1.2571 17 7 8.3719 2.7635 -3.3559 18 6 8.8433 3.9987 -3.7126 19 1 8.9788 4.7626 -2.9612 20 6 9.1480 4.2686 -5.0397 21 7 8.9834 3.3375 -5.9552 22 14 9.7903 5.9539 -5.5263 23 1 9.8842 6.8150 -4.3202 24 1 11.1356 5.8127 -6.1393 25 1 8.8624 6.5732 -6.5063 26 6 8.1272 0.9937 -1.5980 27 6 8.2010 -0.0785 -2.6858 28 6 9.7126 -0.1405 -2.4006 29 6 9.3944 0.3905 -0.9911 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.7612 1.9264 -0.9360 35 1 1.5968 1.9846 0.8353 36 1 3.1254 1.4441 0.1007 37 1 4.1694 -1.4361 3.0669 38 1 2.8098 -2.5667 2.8634 39 1 4.3630 -2.8881 2.0558 40 1 3.4170 -1.1416 -0.8762 41 1 4.5917 -2.2390 -0.1122 42 1 5.9051 -0.4774 -1.6718 43 1 5.9511 2.1103 -2.5523 44 1 6.1380 3.2405 -1.1424 45 1 8.2506 2.0773 -4.0306 46 1 9.1960 3.5263 -6.8827 47 1 7.6700 -0.9961 -2.4324 48 1 7.9586 0.2915 -3.6819 49 1 10.2990 0.5514 -3.0051 50 1 10.1158 -1.1531 -2.4043 51 1 10.1054 1.1353 -0.6334 52 1 9.1989 -0.3952 -0.2613 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202988226.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:55 Heat of formation + Delta-G solvation = -14.583499 kcal Electronic energy + Delta-G solvation = -30681.316429 eV Core-core repulsion = 26682.751923 eV Total energy + Delta-G solvation = -3998.564506 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.88759 -40.28863 -38.81489 -35.64256 -34.88487 -34.67874 -34.18052 -32.57015 -30.10564 -28.87484 -27.42677 -26.98432 -25.56338 -24.55553 -24.20595 -22.91714 -22.28885 -20.63790 -20.51240 -19.06422 -18.02663 -17.77265 -17.50592 -16.87331 -16.58085 -15.93828 -15.44566 -15.20399 -14.88772 -14.70816 -14.50684 -14.29027 -14.08957 -13.76814 -13.31020 -13.08409 -12.92849 -12.77311 -12.66260 -12.47660 -12.34281 -12.27351 -12.17018 -12.10762 -11.90302 -11.57169 -11.32621 -11.26907 -11.12455 -10.96815 -10.85241 -10.76707 -10.26663 -10.19799 -10.08838 -9.95099 -9.87877 -9.79264 -9.52207 -8.92871 -8.86985 -8.73158 -7.03134 -5.85805 -3.14115 2.33695 2.50479 2.66064 3.26283 3.38279 3.45368 3.46608 4.17057 4.44802 4.51753 4.60306 4.61249 4.74524 4.76824 4.86010 4.87745 5.00611 5.01818 5.18043 5.19402 5.20208 5.36872 5.38809 5.45294 5.57766 5.62524 5.64038 5.64659 5.72419 5.82093 5.83739 5.91667 5.94083 5.97284 6.00735 6.08166 6.12018 6.15691 6.27655 6.33535 6.45634 6.51681 6.53778 6.80054 6.85868 6.97890 7.03234 7.52307 7.64999 7.94697 8.17676 8.33147 9.45182 10.01065 10.36025 11.36490 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015663 B = 0.002726 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.199275 B =10268.920484 C =11367.879388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.116 4.116 3 C -0.146 4.146 4 C 0.526 3.474 5 O -0.536 6.536 6 N -0.599 5.599 7 C 0.089 3.911 8 C 0.083 3.917 9 C 0.488 3.512 10 O -0.529 6.529 11 N -0.709 5.709 12 C 0.131 3.869 13 H 0.109 0.891 14 C -0.173 4.173 15 C 0.192 3.808 16 H 0.081 0.919 17 N -0.705 5.705 18 C -0.243 4.243 19 H 0.072 0.928 20 C -0.011 4.011 21 N -0.932 5.932 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.291 1.291 26 C -0.120 4.120 27 C -0.116 4.116 28 C -0.130 4.130 29 C -0.126 4.126 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.399 0.601 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.387 0.613 46 H 0.255 0.745 47 H 0.070 0.930 48 H 0.079 0.921 49 H 0.090 0.910 50 H 0.056 0.944 51 H 0.066 0.934 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.910 -13.985 9.649 19.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.137 4.137 3 C -0.204 4.204 4 C 0.315 3.685 5 O -0.412 6.412 6 N -0.331 5.331 7 C -0.053 4.053 8 C -0.044 4.044 9 C 0.272 3.728 10 O -0.405 6.405 11 N -0.360 5.360 12 C 0.026 3.974 13 H 0.127 0.873 14 C -0.216 4.216 15 C 0.079 3.921 16 H 0.099 0.901 17 N -0.344 5.344 18 C -0.374 4.374 19 H 0.090 0.910 20 C -0.207 4.207 21 N -0.580 5.580 22 Si 0.737 3.263 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.122 4.122 27 C -0.154 4.154 28 C -0.167 4.167 29 C -0.164 4.164 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.131 0.869 41 H 0.127 0.873 42 H 0.234 0.766 43 H 0.099 0.901 44 H 0.078 0.922 45 H 0.222 0.778 46 H 0.065 0.935 47 H 0.088 0.912 48 H 0.097 0.903 49 H 0.109 0.891 50 H 0.074 0.926 51 H 0.085 0.915 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.182 -13.290 10.898 19.977 hybrid contribution 0.492 0.381 -1.058 1.227 sum -9.691 -12.909 9.840 18.905 Atomic orbital electron populations 1.21668 0.92398 1.02353 1.02821 1.21374 0.98338 0.98025 0.96001 1.21810 1.02522 0.93165 1.02905 1.20700 0.80043 0.77569 0.90190 1.90672 1.57117 1.59798 1.33613 1.47403 1.18959 1.51752 1.15033 1.21646 1.00329 0.95433 0.87938 1.21634 0.94074 0.99011 0.89711 1.21142 0.82057 0.85980 0.83581 1.90734 1.70299 1.49145 1.30290 1.46003 1.35420 1.34036 1.20541 1.22295 0.88477 0.86796 0.99789 0.87305 1.24271 1.01940 0.96601 0.98757 1.21051 0.92113 0.90301 0.88605 0.90120 1.42345 1.76590 1.13588 1.01872 1.19346 1.35501 0.90060 0.92509 0.91019 1.24730 1.02141 0.97871 0.95932 1.69657 1.54649 1.32646 1.01032 0.86138 0.78202 0.83772 0.78201 1.20506 1.21875 1.21859 1.23621 0.93379 0.98528 0.96698 1.22424 0.97038 0.96705 0.99203 1.22727 0.96388 1.00542 0.97079 1.22702 0.97352 0.99777 0.96539 0.91396 0.91665 0.92532 0.89260 0.91281 0.91864 0.91251 0.92208 0.90810 0.91231 0.86927 0.87273 0.76571 0.90144 0.92178 0.77776 0.93505 0.91179 0.90274 0.89120 0.92551 0.91520 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 8.78 37.16 0.33 -0.88 16 2 C -0.12 -1.13 2.60 -91.77 -0.24 -1.37 16 3 C -0.15 -1.59 9.18 37.16 0.34 -1.25 16 4 C 0.53 6.53 6.73 -10.98 -0.07 6.45 16 5 O -0.54 -8.50 15.87 5.56 0.09 -8.41 16 6 N -0.60 -6.24 2.36 -182.96 -0.43 -6.68 16 7 C 0.09 0.84 10.39 59.84 0.62 1.46 16 8 C 0.08 0.65 5.84 -5.19 -0.03 0.62 16 9 C 0.49 5.52 6.63 -10.98 -0.07 5.45 16 10 O -0.53 -8.25 15.01 5.56 0.08 -8.17 16 11 N -0.71 -7.61 5.25 -53.37 -0.28 -7.89 16 12 C 0.13 1.80 4.12 -67.49 -0.28 1.52 16 13 H 0.11 1.64 7.47 -51.93 -0.39 1.25 16 14 C -0.17 -2.81 7.68 -25.75 -0.20 -3.01 16 15 C 0.19 3.50 4.36 -67.48 -0.29 3.21 16 16 H 0.08 1.52 8.10 -51.93 -0.42 1.09 16 17 N -0.71 -16.13 5.32 -52.99 -0.28 -16.42 16 18 C -0.24 -6.37 9.97 -15.06 -0.15 -6.52 16 19 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 20 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 21 N -0.93 -26.68 13.06 55.49 0.72 -25.95 16 22 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 C -0.12 -1.72 1.06 -154.72 -0.16 -1.89 16 27 C -0.12 -1.57 6.78 -26.28 -0.18 -1.74 16 28 C -0.13 -1.83 8.08 -25.75 -0.21 -2.04 16 29 C -0.13 -1.71 7.84 -26.28 -0.21 -1.91 16 30 H 0.07 0.70 7.86 -51.93 -0.41 0.30 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.65 5.93 -51.93 -0.31 0.34 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.89 5.59 -51.93 -0.29 0.60 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.71 7.63 -51.93 -0.40 0.31 16 39 H 0.07 0.45 7.87 -51.93 -0.41 0.04 16 40 H 0.11 0.64 5.63 -51.93 -0.29 0.34 16 41 H 0.11 0.52 7.91 -51.93 -0.41 0.11 16 42 H 0.40 3.40 7.04 -40.82 -0.29 3.11 16 43 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.39 9.27 5.92 -40.82 -0.24 9.03 16 46 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 47 H 0.07 0.74 7.03 -51.93 -0.36 0.37 16 48 H 0.08 1.26 6.42 -51.93 -0.33 0.93 16 49 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 50 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 52 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 409.37 15.07 6.17 6.17 Total: -1.00 -33.01 409.37 -8.60 -41.60 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -8.75 Total: 11.41 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -0.90 Total: -2.30 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.27 Total: -56.93 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: 0.17 Total: -16.58 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.01 -8.60 -41.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202988226.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.021 kcal (2) G-P(sol) polarization free energy of solvation -33.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds