Wall clock time and date at job start Tue Mar 31 2020 19:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47149 * 2 1 4 4 C 1.50701 * 109.47203 * 120.00325 * 2 1 3 5 5 O 1.21277 * 119.99948 * 330.60319 * 4 2 1 6 6 N 1.34776 * 119.99857 * 150.60975 * 4 2 1 7 7 C 1.46500 * 120.00040 * 183.51240 * 6 4 2 8 8 C 1.46495 * 120.00343 * 3.51301 * 6 4 2 9 9 C 1.50701 * 109.47104 * 93.06867 * 8 6 4 10 10 O 1.21283 * 120.00289 * 0.02562 * 9 8 6 11 11 N 1.34777 * 120.00080 * 180.02562 * 9 8 6 12 12 C 1.46505 * 120.00169 * 180.02562 * 11 9 8 13 13 H 1.09003 * 112.88205 * 336.33962 * 12 11 9 14 14 C 1.53947 * 113.66540 * 107.81130 * 12 11 9 15 15 C 1.53951 * 87.29496 * 89.73649 * 14 12 11 16 16 H 1.09002 * 113.66568 * 270.26162 * 15 14 12 17 17 N 1.46501 * 113.74484 * 139.21798 * 15 14 12 18 18 C 1.36939 * 120.00374 * 107.77502 * 17 15 14 19 19 H 1.07997 * 119.99696 * 359.97438 * 18 17 15 20 20 C 1.38804 * 120.00238 * 179.97438 * 18 17 15 21 21 N 1.31623 * 120.00068 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00114 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46883 * 90.00322 * 22 20 18 24 24 H 1.48497 * 109.47265 * 210.00074 * 22 20 18 25 25 H 1.48495 * 109.47360 * 330.00261 * 22 20 18 26 26 C 1.52906 * 86.78240 * 24.73560 * 15 14 12 27 27 C 1.52905 * 121.14033 * 100.81882 * 26 15 14 28 28 C 1.53951 * 86.78491 * 100.81976 * 27 26 15 29 29 C 1.52912 * 121.13517 * 209.38136 * 26 15 14 30 30 H 1.09000 * 109.47318 * 299.99549 * 1 2 3 31 31 H 1.09003 * 109.47462 * 59.99926 * 1 2 3 32 32 H 1.09005 * 109.47202 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47091 * 240.00086 * 2 1 3 34 34 H 1.08997 * 109.46871 * 174.38092 * 3 2 1 35 35 H 1.08995 * 109.47111 * 294.37870 * 3 2 1 36 36 H 1.09001 * 109.46621 * 54.38332 * 3 2 1 37 37 H 1.09002 * 109.47041 * 275.10555 * 7 6 4 38 38 H 1.09000 * 109.46889 * 35.09734 * 7 6 4 39 39 H 1.08993 * 109.47554 * 155.10302 * 7 6 4 40 40 H 1.08994 * 109.47146 * 333.07443 * 8 6 4 41 41 H 1.09000 * 109.47672 * 213.06689 * 8 6 4 42 42 H 0.97002 * 120.00146 * 0.02562 * 11 9 8 43 43 H 1.08998 * 113.58208 * 204.34250 * 14 12 11 44 44 H 1.08997 * 113.57718 * 335.13843 * 14 12 11 45 45 H 0.97005 * 119.99827 * 287.76919 * 17 15 14 46 46 H 0.97007 * 119.99833 * 180.02562 * 21 20 18 47 47 H 1.08999 * 113.66437 * 215.29478 * 27 26 15 48 48 H 1.09006 * 113.65876 * 346.34569 * 27 26 15 49 49 H 1.09004 * 113.57603 * 270.13070 * 28 27 26 50 50 H 1.08996 * 113.65241 * 139.35393 * 28 27 26 51 51 H 1.08996 * 113.66485 * 13.64556 * 29 26 15 52 52 H 1.08997 * 113.66253 * 144.61601 * 29 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 1.3717 -0.7024 2.2475 6 7 3.2157 -1.3547 1.2006 7 6 3.6685 -2.1098 2.3716 8 6 4.0495 -1.2999 -0.0027 9 6 5.0321 -0.1638 0.1182 10 8 5.0360 0.5315 1.1120 11 7 5.9066 0.0798 -0.8779 12 6 6.8623 1.1840 -0.7601 13 1 6.5300 1.9604 -0.0710 14 6 8.3121 0.7238 -0.5232 15 6 8.4767 0.6973 -2.0536 16 1 8.2195 -0.2610 -2.5049 17 7 9.7652 1.2179 -2.5175 18 6 10.7121 0.3610 -3.0115 19 1 10.5093 -0.6987 -3.0589 20 6 11.9327 0.8543 -3.4515 21 7 12.1797 2.1459 -3.3943 22 14 13.2247 -0.3148 -4.1248 23 1 13.0393 -0.4665 -5.5904 24 1 14.5779 0.2321 -3.8511 25 1 13.0841 -1.6393 -3.4683 26 6 7.3450 1.7241 -2.1068 27 6 7.6361 3.2123 -2.3032 28 6 7.2443 3.0055 -3.7777 29 6 6.4047 1.8029 -3.3100 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1253 1.4441 0.1006 35 1 1.7612 1.9265 -0.9360 36 1 1.5968 1.9845 0.8354 37 1 4.1694 -1.4361 3.0668 38 1 2.8098 -2.5666 2.8635 39 1 4.3630 -2.8881 2.0558 40 1 3.4169 -1.1417 -0.8761 41 1 4.5918 -2.2391 -0.1122 42 1 5.9034 -0.4760 -1.6729 43 1 8.9324 1.4727 -0.0308 44 1 8.3871 -0.2599 -0.0596 45 1 9.9475 2.1697 -2.4747 46 1 13.0326 2.4906 -3.7021 47 1 6.9563 3.8668 -1.7576 48 1 8.6844 3.4754 -2.1618 49 1 8.0830 2.7296 -4.4170 50 1 6.6483 3.8196 -4.1900 51 1 6.4693 0.9401 -3.9729 52 1 5.3785 2.0597 -3.0473 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202988227.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:58 Heat of formation + Delta-G solvation = -13.981003 kcal Electronic energy + Delta-G solvation = -30685.051080 eV Core-core repulsion = 26686.512700 eV Total energy + Delta-G solvation = -3998.538380 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.91487 -40.30154 -38.82664 -35.67967 -35.01873 -34.73496 -34.10872 -32.39367 -30.10838 -28.81866 -27.48363 -26.99356 -25.50571 -24.66179 -24.17398 -22.94069 -22.28888 -21.19501 -20.11612 -19.08852 -18.00927 -17.80390 -17.51250 -16.94359 -16.43738 -15.88955 -15.45004 -15.21736 -14.93433 -14.80520 -14.37853 -14.32505 -14.03239 -13.74794 -13.52768 -13.25796 -12.93984 -12.71903 -12.58957 -12.47354 -12.37976 -12.32019 -12.19309 -12.05521 -11.83955 -11.75089 -11.40604 -11.36917 -11.18286 -10.93096 -10.87843 -10.65466 -10.28186 -10.22139 -10.13213 -9.91475 -9.90221 -9.70492 -9.45570 -8.91943 -8.89765 -8.76796 -7.03127 -5.85410 -3.14215 2.30449 2.48704 2.63883 3.19852 3.37257 3.42980 3.44704 4.13348 4.40269 4.51198 4.55893 4.58925 4.72167 4.74809 4.82395 4.96697 5.00721 5.04210 5.16798 5.18637 5.23674 5.36306 5.38184 5.38974 5.51553 5.55853 5.62055 5.63994 5.68904 5.77454 5.89880 5.92182 5.94671 5.98248 6.00808 6.05730 6.09321 6.12735 6.25552 6.36015 6.42350 6.52306 6.58277 6.83396 6.87182 6.97114 7.02108 7.49635 7.61961 7.92325 8.16509 8.33258 9.44913 10.01985 10.36399 11.36728 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019082 B = 0.002600 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.965515 B =10765.673388 C =11575.365130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.116 4.116 3 C -0.146 4.146 4 C 0.526 3.474 5 O -0.536 6.536 6 N -0.598 5.598 7 C 0.088 3.912 8 C 0.084 3.916 9 C 0.490 3.510 10 O -0.527 6.527 11 N -0.701 5.701 12 C 0.130 3.870 13 H 0.095 0.905 14 C -0.174 4.174 15 C 0.192 3.808 16 H 0.076 0.924 17 N -0.708 5.708 18 C -0.245 4.245 19 H 0.070 0.930 20 C -0.010 4.010 21 N -0.930 5.930 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.121 4.121 27 C -0.110 4.110 28 C -0.131 4.131 29 C -0.125 4.125 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.400 0.600 43 H 0.085 0.915 44 H 0.058 0.942 45 H 0.387 0.613 46 H 0.256 0.744 47 H 0.073 0.927 48 H 0.078 0.922 49 H 0.090 0.910 50 H 0.056 0.944 51 H 0.064 0.936 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.475 -5.586 2.519 21.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.137 4.137 3 C -0.203 4.203 4 C 0.314 3.686 5 O -0.412 6.412 6 N -0.331 5.331 7 C -0.054 4.054 8 C -0.043 4.043 9 C 0.274 3.726 10 O -0.403 6.403 11 N -0.351 5.351 12 C 0.024 3.976 13 H 0.113 0.887 14 C -0.217 4.217 15 C 0.080 3.920 16 H 0.093 0.907 17 N -0.346 5.346 18 C -0.376 4.376 19 H 0.088 0.912 20 C -0.207 4.207 21 N -0.578 5.578 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.124 4.124 27 C -0.148 4.148 28 C -0.169 4.169 29 C -0.162 4.162 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.235 0.765 43 H 0.103 0.897 44 H 0.076 0.924 45 H 0.223 0.777 46 H 0.066 0.934 47 H 0.092 0.908 48 H 0.097 0.903 49 H 0.108 0.892 50 H 0.075 0.925 51 H 0.083 0.917 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.678 -5.226 3.739 21.653 hybrid contribution 1.154 -0.595 -0.759 1.504 sum -19.524 -5.821 2.980 20.590 Atomic orbital electron populations 1.21667 0.92397 1.02416 1.02766 1.21370 0.98334 0.97937 0.96100 1.21804 1.02456 0.93296 1.02790 1.20678 0.80098 0.77651 0.90167 1.90676 1.57108 1.59792 1.33597 1.47407 1.18906 1.51681 1.15087 1.21666 1.00360 0.95507 0.87893 1.21619 0.93988 0.99087 0.89643 1.21121 0.81799 0.86083 0.83555 1.90742 1.70671 1.48972 1.29902 1.45618 1.35198 1.33686 1.20644 1.21721 0.88818 0.88860 0.98158 0.88736 1.24271 0.94330 1.01172 1.01898 1.21274 0.85487 0.93936 0.91349 0.90659 1.42403 1.11176 1.07596 1.73453 1.19261 0.94118 0.90354 1.33895 0.91195 1.24745 0.98093 0.95890 1.01935 1.69654 1.24219 1.11121 1.52820 0.86214 0.81382 0.79931 0.78777 1.21703 1.21766 1.20774 1.23592 0.98219 0.97698 0.92872 1.22452 1.02209 0.93649 0.96513 1.22739 1.00040 0.97371 0.96722 1.22631 0.97259 0.99066 0.97286 0.91382 0.91734 0.92482 0.89240 0.91329 0.91415 0.91838 0.92138 0.90790 0.91098 0.86940 0.87059 0.76540 0.89662 0.92355 0.77688 0.93400 0.90816 0.90305 0.89177 0.92500 0.91736 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 8.78 37.15 0.33 -0.77 16 2 C -0.12 -1.03 2.60 -91.77 -0.24 -1.27 16 3 C -0.15 -1.40 9.18 37.16 0.34 -1.06 16 4 C 0.53 6.28 6.73 -10.99 -0.07 6.21 16 5 O -0.54 -8.30 15.87 5.56 0.09 -8.22 16 6 N -0.60 -6.15 2.36 -182.96 -0.43 -6.59 16 7 C 0.09 0.85 10.39 59.85 0.62 1.47 16 8 C 0.08 0.64 5.84 -5.20 -0.03 0.61 16 9 C 0.49 5.48 6.63 -10.98 -0.07 5.41 16 10 O -0.53 -8.22 15.01 5.55 0.08 -8.14 16 11 N -0.70 -7.44 5.05 -53.37 -0.27 -7.71 16 12 C 0.13 1.79 4.12 -67.48 -0.28 1.52 16 13 H 0.09 1.45 7.46 -51.93 -0.39 1.07 16 14 C -0.17 -2.88 7.69 -25.75 -0.20 -3.08 16 15 C 0.19 3.39 4.27 -67.48 -0.29 3.10 16 16 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 17 N -0.71 -16.28 5.33 -52.99 -0.28 -16.56 16 18 C -0.25 -6.39 9.97 -15.06 -0.15 -6.54 16 19 H 0.07 1.77 7.83 -52.49 -0.41 1.35 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 21 N -0.93 -26.92 13.06 55.49 0.72 -26.20 16 22 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C -0.12 -1.75 0.92 -154.71 -0.14 -1.89 16 27 C -0.11 -1.66 7.47 -26.28 -0.20 -1.86 16 28 C -0.13 -1.89 8.08 -25.75 -0.21 -2.10 16 29 C -0.12 -1.57 7.49 -26.28 -0.20 -1.77 16 30 H 0.07 0.65 7.86 -51.93 -0.41 0.25 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.56 5.92 -51.93 -0.31 0.25 16 34 H 0.07 0.79 5.59 -51.93 -0.29 0.50 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.72 7.63 -51.93 -0.40 0.33 16 39 H 0.07 0.49 7.87 -51.93 -0.41 0.09 16 40 H 0.11 0.56 5.63 -51.93 -0.29 0.26 16 41 H 0.11 0.55 7.91 -51.93 -0.41 0.14 16 42 H 0.40 3.30 8.62 -40.82 -0.35 2.95 16 43 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.39 9.53 5.92 -40.82 -0.24 9.29 16 46 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.08 1.39 6.42 -51.93 -0.33 1.06 16 49 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 50 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 52 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 411.98 15.07 6.21 6.21 Total: -1.00 -33.38 411.98 -8.65 -42.03 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -8.87 Total: 11.06 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -0.88 Total: -2.39 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -0.26 Total: -57.06 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: 0.17 Total: -16.35 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.38 -8.65 -42.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202988227.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.049 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds