Wall clock time and date at job start Tue Mar 31 2020 19:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47210 * 2 1 4 4 H 1.09007 * 109.13246 * 304.48373 * 3 2 1 5 5 C 1.52923 * 109.30238 * 185.00002 * 3 2 1 6 6 C 1.53349 * 108.67472 * 188.93376 * 5 3 2 7 7 H 1.09001 * 109.67060 * 307.76095 * 6 5 3 8 8 C 1.50696 * 109.67226 * 187.26703 * 6 5 3 9 9 O 1.21286 * 119.99974 * 338.09916 * 8 6 5 10 10 N 1.34778 * 119.99894 * 158.10398 * 8 6 5 11 11 C 1.46925 * 120.62761 * 175.67522 * 10 8 6 12 12 C 1.53196 * 108.89339 * 126.29571 * 11 10 8 13 13 C 1.53348 * 109.15085 * 54.57593 * 12 11 10 14 14 C 1.52996 * 109.42313 * 178.67575 * 13 12 11 15 15 N 1.46500 * 109.46910 * 295.12943 * 14 13 12 16 16 C 1.36935 * 120.00204 * 180.02562 * 15 14 13 17 17 H 1.08009 * 119.99968 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00409 * 179.97438 * 16 15 14 19 19 N 1.31623 * 119.99744 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00226 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47215 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47382 * 120.00303 * 20 18 16 23 23 H 1.48511 * 109.47467 * 240.00277 * 20 18 16 24 24 C 1.53049 * 109.60598 * 298.71321 * 13 12 11 25 25 C 1.46924 * 120.63184 * 355.64624 * 10 8 6 26 26 C 1.53073 * 108.45404 * 67.51173 * 6 5 3 27 27 C 1.50187 * 109.87924 * 311.13660 * 26 6 5 28 28 O 1.21279 * 118.23574 * 197.58830 * 27 26 6 29 29 N 1.33360 * 123.52005 * 17.55565 * 27 26 6 30 30 H 1.09001 * 109.47303 * 59.99919 * 1 2 3 31 31 H 1.08996 * 109.47195 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47237 * 299.99778 * 1 2 3 33 33 H 1.08995 * 109.47259 * 239.99685 * 2 1 3 34 34 H 1.09001 * 109.47303 * 120.00081 * 2 1 3 35 35 H 1.08999 * 109.60090 * 69.17630 * 5 3 2 36 36 H 1.08995 * 109.73579 * 308.77061 * 5 3 2 37 37 H 1.08999 * 109.58308 * 246.15159 * 11 10 8 38 38 H 1.08998 * 109.59298 * 6.43280 * 11 10 8 39 39 H 1.08999 * 109.49549 * 174.65654 * 12 11 10 40 40 H 1.08994 * 109.49516 * 294.75401 * 12 11 10 41 41 H 1.08999 * 109.42379 * 58.74918 * 13 12 11 42 42 H 1.09000 * 109.46780 * 55.12421 * 14 13 12 43 43 H 1.08993 * 109.47570 * 175.12799 * 14 13 12 44 44 H 0.97001 * 120.00009 * 359.97438 * 15 14 13 45 45 H 0.96998 * 120.00010 * 179.97438 * 19 18 16 46 46 H 1.08995 * 109.49819 * 301.42161 * 24 13 12 47 47 H 1.09003 * 109.49847 * 181.32270 * 24 13 12 48 48 H 1.09002 * 109.58329 * 353.41949 * 25 10 8 49 49 H 1.08999 * 109.58424 * 113.70364 * 25 10 8 50 50 H 1.09002 * 109.39814 * 71.25086 * 26 6 5 51 51 H 1.08998 * 109.39762 * 190.98344 * 26 6 5 52 52 H 0.97002 * 117.94714 * 177.79381 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6094 1.9737 -0.8489 5 6 3.5640 1.4397 -0.1258 6 6 4.0779 2.8668 0.0999 7 1 3.5454 3.5564 -0.5552 8 6 5.5548 2.9266 -0.1935 9 8 6.2216 1.9141 -0.1578 10 7 6.1347 4.1052 -0.4955 11 6 7.5880 4.1959 -0.6911 12 6 7.8660 4.8439 -2.0512 13 6 7.1334 6.1890 -2.1267 14 6 7.4335 6.8571 -3.4700 15 7 8.8596 7.1840 -3.5449 16 6 9.3646 7.7930 -4.6626 17 1 8.7117 8.0319 -5.4891 18 6 10.7157 8.1033 -4.7334 19 7 11.5114 7.8126 -3.7260 20 14 11.4047 8.9333 -6.2584 21 1 10.3120 9.1506 -7.2403 22 1 12.0014 10.2406 -5.8837 23 1 12.4489 8.0681 -6.8640 24 6 5.6257 5.9606 -1.9964 25 6 5.3255 5.3234 -0.6360 26 6 3.8269 3.2467 1.5614 27 6 2.4087 2.9247 1.9364 28 8 1.9456 3.4449 2.9293 29 7 1.6313 2.0979 1.2360 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8481 1.1021 -1.1225 36 1 3.9939 0.7737 0.6223 37 1 8.0258 4.8047 0.1000 38 1 8.0232 3.1969 -0.6666 39 1 8.9382 5.0029 -2.1660 40 1 7.5075 4.1898 -2.8458 41 1 7.4743 6.8334 -1.3164 42 1 7.1738 6.1760 -4.2804 43 1 6.8460 7.7706 -3.5607 44 1 9.4459 6.9698 -2.8025 45 1 12.4556 8.0291 -3.7756 46 1 5.2883 5.2961 -2.7918 47 1 5.1051 6.9151 -2.0738 48 1 4.2674 5.0680 -0.5777 49 1 5.5770 6.0230 0.1611 50 1 4.5072 2.6866 2.2030 51 1 4.0034 4.3142 1.6933 52 1 0.7377 1.9221 1.5699 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205747066.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:46 Heat of formation + Delta-G solvation = -81.728609 kcal Electronic energy + Delta-G solvation = -30005.095028 eV Core-core repulsion = 26003.618892 eV Total energy + Delta-G solvation = -4001.476136 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.27223 -39.96207 -37.95682 -37.31159 -35.03882 -34.39293 -32.82132 -32.48985 -31.07182 -30.41599 -29.49763 -27.00148 -25.82500 -24.07597 -23.80897 -22.69681 -22.25302 -21.70401 -20.29298 -19.63876 -18.92477 -17.74455 -17.52674 -16.97963 -16.74215 -16.10006 -15.56519 -15.29265 -14.94676 -14.80958 -14.41616 -14.28887 -14.10906 -14.07975 -13.95807 -13.76066 -13.63272 -13.27320 -13.14361 -12.86821 -12.46715 -12.42058 -12.20995 -11.93549 -11.90808 -11.80270 -11.52172 -11.48002 -11.31395 -11.15550 -11.01014 -10.86262 -10.55769 -10.42182 -10.36562 -10.20507 -9.97159 -9.75666 -9.62181 -9.51202 -8.89066 -8.69712 -6.92876 -5.78154 -3.06440 2.24384 2.40726 2.79987 2.84738 3.42134 3.47785 3.50017 3.93430 4.00053 4.15428 4.30016 4.44436 4.52646 4.55099 4.57911 4.62099 4.83454 4.89367 4.92766 5.00970 5.03188 5.10145 5.18669 5.23734 5.28798 5.34192 5.38305 5.44671 5.49647 5.54111 5.57682 5.59291 5.65362 5.75840 5.77008 5.88938 5.95118 6.06731 6.12688 6.25642 6.33598 6.36133 6.46322 6.65515 6.77135 6.88555 6.91510 7.27531 7.69128 7.81544 7.99815 8.41091 9.52271 10.10396 10.44772 11.44824 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024342 B = 0.002032 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.014464 B =13777.399446 C =13913.479328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.136 4.136 3 C 0.139 3.861 4 H 0.079 0.921 5 C -0.113 4.113 6 C -0.114 4.114 7 H 0.103 0.897 8 C 0.520 3.480 9 O -0.540 6.540 10 N -0.604 5.604 11 C 0.109 3.891 12 C -0.123 4.123 13 C -0.094 4.094 14 C 0.158 3.842 15 N -0.732 5.732 16 C -0.238 4.238 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.933 5.933 20 Si 0.906 3.094 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.127 4.127 25 C 0.103 3.897 26 C -0.124 4.124 27 C 0.526 3.474 28 O -0.555 6.555 29 N -0.715 5.715 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.017 0.983 43 H 0.018 0.982 44 H 0.384 0.616 45 H 0.254 0.746 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.082 0.918 49 H 0.073 0.927 50 H 0.107 0.893 51 H 0.107 0.893 52 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.577 -14.396 9.311 28.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.175 4.175 3 C 0.034 3.966 4 H 0.097 0.903 5 C -0.151 4.151 6 C -0.135 4.135 7 H 0.121 0.879 8 C 0.308 3.692 9 O -0.417 6.417 10 N -0.337 5.337 11 C -0.013 4.013 12 C -0.161 4.161 13 C -0.113 4.113 14 C 0.031 3.969 15 N -0.376 5.376 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.582 5.582 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.166 4.166 25 C -0.020 4.020 26 C -0.164 4.164 27 C 0.313 3.687 28 O -0.433 6.433 29 N -0.368 5.368 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.035 0.965 43 H 0.036 0.964 44 H 0.218 0.782 45 H 0.064 0.936 46 H 0.085 0.915 47 H 0.095 0.905 48 H 0.100 0.900 49 H 0.091 0.909 50 H 0.125 0.875 51 H 0.126 0.874 52 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -22.203 -14.531 9.587 28.214 hybrid contribution 0.365 0.455 -0.656 0.878 sum -21.837 -14.077 8.931 27.473 Atomic orbital electron populations 1.21813 0.95294 1.02366 1.01921 1.21922 0.96503 0.95310 1.03726 1.21091 0.95179 0.93729 0.86601 0.90270 1.21793 0.92898 0.95361 1.05013 1.21488 0.94368 0.99812 0.97835 0.87874 1.20286 0.89174 0.83049 0.76715 1.90706 1.64952 1.33725 1.52321 1.48179 1.08652 1.08120 1.68739 1.21748 0.78941 1.02557 0.98014 1.21963 1.02416 0.96068 0.95654 1.21365 0.93543 0.96582 0.99837 1.20659 0.87465 0.95745 0.93047 1.42380 1.03005 1.72419 1.19830 1.19270 0.92107 1.30617 0.94958 0.91217 1.24740 0.96288 1.02089 0.97981 1.69663 1.04380 1.53238 1.30928 0.86123 0.78817 0.78860 0.82417 1.20599 1.21885 1.21884 1.21916 0.97420 1.01042 0.96183 1.21896 0.95089 0.86354 0.98629 1.21605 0.94140 1.05017 0.95625 1.19977 0.88002 0.78019 0.82719 1.90786 1.73921 1.51665 1.26973 1.45705 1.18121 1.47013 1.25988 0.92207 0.92067 0.92797 0.89962 0.90959 0.88989 0.89643 0.91327 0.89150 0.89358 0.91877 0.90930 0.96489 0.96427 0.78247 0.93568 0.91471 0.90459 0.89992 0.90881 0.87464 0.87420 0.76424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.54 9.75 37.16 0.36 -0.18 16 2 C -0.14 -0.55 5.58 -26.73 -0.15 -0.70 16 3 C 0.14 0.69 3.08 -68.37 -0.21 0.48 16 4 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 5 C -0.11 -0.75 3.98 -26.59 -0.11 -0.86 16 6 C -0.11 -0.87 1.76 -91.56 -0.16 -1.03 16 7 H 0.10 0.63 6.20 -51.93 -0.32 0.31 16 8 C 0.52 5.81 6.82 -10.99 -0.07 5.73 16 9 O -0.54 -7.92 15.63 5.55 0.09 -7.83 16 10 N -0.60 -6.66 2.97 -172.77 -0.51 -7.17 16 11 C 0.11 1.40 6.43 -3.71 -0.02 1.38 16 12 C -0.12 -1.82 5.27 -26.45 -0.14 -1.96 16 13 C -0.09 -1.38 2.19 -90.42 -0.20 -1.58 16 14 C 0.16 3.03 5.65 -4.04 -0.02 3.01 16 15 N -0.73 -18.03 5.32 -59.91 -0.32 -18.35 16 16 C -0.24 -6.60 9.99 -15.06 -0.15 -6.76 16 17 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 18 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 19 N -0.93 -27.96 13.06 55.49 0.72 -27.24 16 20 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 C -0.13 -1.37 5.36 -26.61 -0.14 -1.51 16 25 C 0.10 0.92 6.14 -3.71 -0.02 0.90 16 26 C -0.12 -0.99 5.34 -28.09 -0.15 -1.14 16 27 C 0.53 4.92 7.71 -11.86 -0.09 4.83 16 28 O -0.56 -7.49 17.78 5.56 0.10 -7.40 16 29 N -0.71 -4.75 5.12 -54.85 -0.28 -5.03 16 30 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.05 0.19 6.63 -51.93 -0.34 -0.16 16 33 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 1.26 7.00 -51.93 -0.36 0.90 16 39 H 0.09 1.53 7.16 -51.93 -0.37 1.16 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.38 9.87 6.85 -40.82 -0.28 9.59 16 45 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.08 0.54 5.43 -51.93 -0.28 0.26 16 49 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.11 0.91 8.09 -51.93 -0.42 0.49 16 51 H 0.11 0.81 7.97 -51.93 -0.41 0.39 16 52 H 0.40 2.42 6.98 -40.82 -0.28 2.13 16 LS Contribution 401.83 15.07 6.06 6.06 Total: -1.00 -34.41 401.83 -9.51 -43.92 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -8.97 Total: 5.65 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -1.38 Total: 0.10 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: -0.39 Total: -57.79 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.19 Total: -15.23 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.41 -9.51 -43.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205747066.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.804 kcal (2) G-P(sol) polarization free energy of solvation -34.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds