Wall clock time and date at job start Tue Mar 31 2020 19:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47210 * 2 1 4 4 H 1.09007 * 109.13246 * 304.48373 * 3 2 1 5 5 C 1.52923 * 109.30238 * 185.00002 * 3 2 1 6 6 C 1.53349 * 108.67472 * 188.93376 * 5 3 2 7 7 H 1.09001 * 109.67060 * 307.76095 * 6 5 3 8 8 C 1.50696 * 109.67226 * 187.26703 * 6 5 3 9 9 O 1.21286 * 119.99974 * 338.09916 * 8 6 5 10 10 N 1.34778 * 119.99894 * 158.10398 * 8 6 5 11 11 C 1.46925 * 120.62761 * 175.67522 * 10 8 6 12 12 C 1.53196 * 108.89339 * 126.29571 * 11 10 8 13 13 C 1.53348 * 109.15085 * 54.57593 * 12 11 10 14 14 C 1.52996 * 109.42313 * 178.67575 * 13 12 11 15 15 N 1.46500 * 109.46910 * 295.12943 * 14 13 12 16 16 C 1.36935 * 120.00204 * 180.02562 * 15 14 13 17 17 H 1.08009 * 119.99968 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00409 * 179.97438 * 16 15 14 19 19 N 1.31623 * 119.99744 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00226 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47215 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47382 * 120.00303 * 20 18 16 23 23 H 1.48511 * 109.47467 * 240.00277 * 20 18 16 24 24 C 1.53049 * 109.60598 * 298.71321 * 13 12 11 25 25 C 1.46924 * 120.63184 * 355.64624 * 10 8 6 26 26 C 1.53073 * 108.45404 * 67.51173 * 6 5 3 27 27 C 1.50187 * 109.87924 * 311.13660 * 26 6 5 28 28 O 1.21279 * 118.23574 * 197.58830 * 27 26 6 29 29 N 1.33360 * 123.52005 * 17.55565 * 27 26 6 30 30 H 1.09001 * 109.47303 * 59.99919 * 1 2 3 31 31 H 1.08996 * 109.47195 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47237 * 299.99778 * 1 2 3 33 33 H 1.08995 * 109.47259 * 239.99685 * 2 1 3 34 34 H 1.09001 * 109.47303 * 120.00081 * 2 1 3 35 35 H 1.08999 * 109.60090 * 69.17630 * 5 3 2 36 36 H 1.08995 * 109.73579 * 308.77061 * 5 3 2 37 37 H 1.08999 * 109.58308 * 246.15159 * 11 10 8 38 38 H 1.08998 * 109.59298 * 6.43280 * 11 10 8 39 39 H 1.08999 * 109.49549 * 174.65654 * 12 11 10 40 40 H 1.08994 * 109.49516 * 294.75401 * 12 11 10 41 41 H 1.08999 * 109.42379 * 58.74918 * 13 12 11 42 42 H 1.09000 * 109.46780 * 55.12421 * 14 13 12 43 43 H 1.08993 * 109.47570 * 175.12799 * 14 13 12 44 44 H 0.97001 * 120.00009 * 359.97438 * 15 14 13 45 45 H 0.96998 * 120.00010 * 179.97438 * 19 18 16 46 46 H 1.08995 * 109.49819 * 301.42161 * 24 13 12 47 47 H 1.09003 * 109.49847 * 181.32270 * 24 13 12 48 48 H 1.09002 * 109.58329 * 353.41949 * 25 10 8 49 49 H 1.08999 * 109.58424 * 113.70364 * 25 10 8 50 50 H 1.09002 * 109.39814 * 71.25086 * 26 6 5 51 51 H 1.08998 * 109.39762 * 190.98344 * 26 6 5 52 52 H 0.97002 * 117.94714 * 177.79381 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6094 1.9737 -0.8489 5 6 3.5640 1.4397 -0.1258 6 6 4.0779 2.8668 0.0999 7 1 3.5454 3.5564 -0.5552 8 6 5.5548 2.9266 -0.1935 9 8 6.2216 1.9141 -0.1578 10 7 6.1347 4.1052 -0.4955 11 6 7.5880 4.1959 -0.6911 12 6 7.8660 4.8439 -2.0512 13 6 7.1334 6.1890 -2.1267 14 6 7.4335 6.8571 -3.4700 15 7 8.8596 7.1840 -3.5449 16 6 9.3646 7.7930 -4.6626 17 1 8.7117 8.0319 -5.4891 18 6 10.7157 8.1033 -4.7334 19 7 11.5114 7.8126 -3.7260 20 14 11.4047 8.9333 -6.2584 21 1 10.3120 9.1506 -7.2403 22 1 12.0014 10.2406 -5.8837 23 1 12.4489 8.0681 -6.8640 24 6 5.6257 5.9606 -1.9964 25 6 5.3255 5.3234 -0.6360 26 6 3.8269 3.2467 1.5614 27 6 2.4087 2.9247 1.9364 28 8 1.9456 3.4449 2.9293 29 7 1.6313 2.0979 1.2360 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8481 1.1021 -1.1225 36 1 3.9939 0.7737 0.6223 37 1 8.0258 4.8047 0.1000 38 1 8.0232 3.1969 -0.6666 39 1 8.9382 5.0029 -2.1660 40 1 7.5075 4.1898 -2.8458 41 1 7.4743 6.8334 -1.3164 42 1 7.1738 6.1760 -4.2804 43 1 6.8460 7.7706 -3.5607 44 1 9.4459 6.9698 -2.8025 45 1 12.4556 8.0291 -3.7756 46 1 5.2883 5.2961 -2.7918 47 1 5.1051 6.9151 -2.0738 48 1 4.2674 5.0680 -0.5777 49 1 5.5770 6.0230 0.1611 50 1 4.5072 2.6866 2.2030 51 1 4.0034 4.3142 1.6933 52 1 0.7377 1.9221 1.5699 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205747066.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:45 Heat of formation + Delta-G solvation = -104.974577 kcal Electronic energy + Delta-G solvation = -30006.103049 eV Core-core repulsion = 26003.618892 eV Total energy + Delta-G solvation = -4002.484157 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.01007 -40.81538 -39.00489 -38.01990 -36.56584 -35.13283 -34.31563 -33.05233 -32.21822 -31.99317 -30.03561 -28.34713 -26.64864 -25.48621 -24.72244 -23.66425 -23.20030 -22.58486 -21.36892 -20.31544 -19.84677 -19.14310 -18.35643 -18.19420 -17.38859 -16.96923 -16.68670 -16.31914 -16.09027 -15.66319 -15.59518 -15.34020 -15.30688 -14.93090 -14.83325 -14.71316 -14.44558 -14.31172 -14.13355 -13.84255 -13.74812 -13.41029 -13.14117 -12.98835 -12.91372 -12.77353 -12.41298 -12.33020 -12.25526 -12.11035 -12.07089 -11.91444 -11.83908 -11.74512 -11.65585 -11.45890 -11.36601 -11.19378 -10.92361 -10.55370 -10.10009 -9.65885 -8.97584 -7.95032 -5.22900 1.47121 1.47617 1.48712 1.57671 1.58902 1.93826 2.26925 2.56098 3.24255 3.38731 3.48241 3.59124 3.68813 3.73561 3.82600 3.89496 3.97707 4.04639 4.13744 4.18649 4.23659 4.33131 4.36192 4.47856 4.50958 4.53326 4.64288 4.65854 4.71438 4.75497 4.83027 4.87246 4.90389 4.94619 4.99882 5.04076 5.12638 5.15878 5.18433 5.18754 5.28320 5.31424 5.43882 5.48374 5.55982 5.58840 5.80861 6.28034 6.30137 6.41380 7.11696 7.15855 7.34276 8.12166 8.34296 9.28654 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024342 B = 0.002032 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.014464 B =13777.399446 C =13913.479328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.134 4.134 3 C 0.144 3.856 4 H 0.102 0.898 5 C -0.111 4.111 6 C -0.102 4.102 7 H 0.130 0.870 8 C 0.519 3.481 9 O -0.580 6.580 10 N -0.604 5.604 11 C 0.117 3.883 12 C -0.114 4.114 13 C -0.085 4.085 14 C 0.156 3.844 15 N -0.745 5.745 16 C -0.242 4.242 17 H 0.074 0.926 18 C -0.078 4.078 19 N -0.969 5.969 20 Si 0.972 3.028 21 H -0.266 1.266 22 H -0.293 1.293 23 H -0.295 1.295 24 C -0.119 4.119 25 C 0.103 3.897 26 C -0.119 4.119 27 C 0.527 3.473 28 O -0.602 6.602 29 N -0.703 5.703 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.068 0.932 42 H 0.014 0.986 43 H 0.023 0.977 44 H 0.374 0.626 45 H 0.250 0.750 46 H 0.070 0.930 47 H 0.096 0.904 48 H 0.116 0.884 49 H 0.085 0.915 50 H 0.099 0.901 51 H 0.117 0.883 52 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.228 -14.211 8.597 30.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.172 4.172 3 C 0.039 3.961 4 H 0.119 0.881 5 C -0.150 4.150 6 C -0.123 4.123 7 H 0.148 0.852 8 C 0.308 3.692 9 O -0.459 6.459 10 N -0.336 5.336 11 C -0.006 4.006 12 C -0.152 4.152 13 C -0.104 4.104 14 C 0.030 3.970 15 N -0.388 5.388 16 C -0.374 4.374 17 H 0.092 0.908 18 C -0.270 4.270 19 N -0.620 5.620 20 Si 0.801 3.199 21 H -0.190 1.190 22 H -0.220 1.220 23 H -0.222 1.222 24 C -0.158 4.158 25 C -0.019 4.019 26 C -0.159 4.159 27 C 0.315 3.685 28 O -0.484 6.484 29 N -0.355 5.355 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.032 0.968 43 H 0.041 0.959 44 H 0.207 0.793 45 H 0.059 0.941 46 H 0.088 0.912 47 H 0.114 0.886 48 H 0.134 0.866 49 H 0.103 0.897 50 H 0.117 0.883 51 H 0.136 0.864 52 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -24.924 -14.360 8.835 30.091 hybrid contribution 1.159 0.331 -0.466 1.293 sum -23.765 -14.029 8.368 28.838 Atomic orbital electron populations 1.21814 0.94673 1.02633 1.02227 1.21899 0.96957 0.94525 1.03787 1.21204 0.94014 0.94521 0.86311 0.88050 1.21787 0.93953 0.94485 1.04743 1.21474 0.91749 1.01105 0.97982 0.85248 1.20879 0.90398 0.82252 0.75651 1.90695 1.66159 1.35128 1.53959 1.48248 1.07849 1.09099 1.68386 1.21491 0.80695 1.01507 0.96861 1.21799 1.00349 0.96417 0.96669 1.21271 0.96649 0.95529 0.96927 1.20857 0.84495 0.96099 0.95594 1.42613 1.05226 1.72151 1.18777 1.19673 0.92403 1.29601 0.95768 0.90761 1.25559 0.96844 1.03635 1.00970 1.69817 1.04309 1.54965 1.32917 0.85090 0.78112 0.77386 0.79274 1.19026 1.22035 1.22211 1.21876 0.93976 1.02380 0.97553 1.22098 0.96567 0.85467 0.97727 1.21552 0.93185 1.05553 0.95589 1.20114 0.88354 0.77849 0.82188 1.90771 1.74822 1.53756 1.29033 1.45710 1.17997 1.45802 1.26025 0.91503 0.91911 0.92865 0.89088 0.91822 0.88686 0.91109 0.90707 0.90636 0.92697 0.92747 0.91394 0.96809 0.95872 0.79342 0.94074 0.91168 0.88586 0.86586 0.89671 0.88257 0.86435 0.75914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 9.75 71.98 0.70 -0.02 16 2 C -0.13 -0.78 5.58 30.59 0.17 -0.61 16 3 C 0.14 1.03 3.08 45.10 0.14 1.16 16 4 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 5 C -0.11 -1.25 3.98 30.69 0.12 -1.13 16 6 C -0.10 -1.28 1.76 -11.40 -0.02 -1.30 16 7 H 0.13 0.97 6.20 -2.39 -0.01 0.96 16 8 C 0.52 10.74 6.82 87.66 0.60 11.34 16 9 O -0.58 -16.82 15.63 -3.05 -0.05 -16.87 16 10 N -0.60 -12.19 2.97 -818.90 -2.43 -14.62 16 11 C 0.12 3.00 6.43 86.36 0.56 3.55 16 12 C -0.11 -3.42 5.27 30.78 0.16 -3.25 16 13 C -0.08 -2.40 2.19 -10.66 -0.02 -2.42 16 14 C 0.16 5.88 5.65 86.38 0.49 6.36 16 15 N -0.74 -37.15 5.32 -343.46 -1.83 -38.97 16 16 C -0.24 -13.48 9.99 84.03 0.84 -12.64 16 17 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 18 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 19 N -0.97 -59.27 13.06 21.65 0.28 -58.99 16 20 Si 0.97 46.13 29.55 68.60 2.03 48.16 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 22 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 23 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 24 C -0.12 -2.21 5.36 30.67 0.16 -2.04 16 25 C 0.10 1.47 6.14 86.36 0.53 2.00 16 26 C -0.12 -1.66 5.34 29.71 0.16 -1.50 16 27 C 0.53 8.97 7.71 87.72 0.68 9.65 16 28 O -0.60 -15.72 17.78 -3.03 -0.05 -15.77 16 29 N -0.70 -7.79 5.12 -446.62 -2.29 -10.08 16 30 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.05 0.26 6.63 -2.38 -0.02 0.24 16 33 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 1.03 8.08 -2.39 -0.02 1.01 16 37 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.08 2.17 7.00 -2.39 -0.02 2.15 16 39 H 0.05 2.01 7.16 -2.39 -0.02 1.99 16 40 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.02 0.86 8.14 -2.39 -0.02 0.85 16 44 H 0.37 19.84 6.85 -92.71 -0.63 19.20 16 45 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 46 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.10 1.49 8.14 -2.39 -0.02 1.48 16 48 H 0.12 0.93 5.43 -2.39 -0.01 0.91 16 49 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.10 1.59 8.09 -2.39 -0.02 1.57 16 51 H 0.12 1.43 7.97 -2.39 -0.02 1.41 16 52 H 0.40 4.07 6.98 -92.71 -0.65 3.42 16 Total: -1.00 -76.29 401.83 1.03 -75.26 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: -0.36 Total: 26.74 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 5.73 Total: 5.15 kcal Atomic # 7 Polarization: -116.40 SS G_CDS: -6.27 Total: -122.66 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -0.10 Total: -32.64 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -76.29 1.03 -75.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205747066.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.712 kcal (2) G-P(sol) polarization free energy of solvation -76.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds