Wall clock time and date at job start Tue Mar 31 2020 19:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47144 * 2 1 4 4 H 1.08999 * 109.29674 * 305.41127 * 3 2 1 5 5 C 1.52972 * 109.30405 * 186.07354 * 3 2 1 6 6 C 1.53346 * 108.65165 * 188.97079 * 5 3 2 7 7 H 1.09002 * 109.67543 * 187.24281 * 6 5 3 8 8 C 1.50693 * 109.67576 * 307.74433 * 6 5 3 9 9 O 1.21279 * 120.00314 * 95.10652 * 8 6 5 10 10 N 1.34782 * 120.00132 * 275.11139 * 8 6 5 11 11 C 1.46923 * 120.63458 * 175.56127 * 10 8 6 12 12 C 1.53191 * 108.89413 * 233.68139 * 11 10 8 13 13 C 1.53037 * 109.30945 * 305.29030 * 12 11 10 14 14 C 1.52997 * 109.45794 * 181.37005 * 13 12 11 15 15 N 1.46505 * 109.47243 * 175.00380 * 14 13 12 16 16 C 1.36937 * 120.00056 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00264 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00097 * 179.97438 * 16 15 14 19 19 N 1.31621 * 119.99712 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00310 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46809 * 89.99996 * 20 18 16 22 22 H 1.48496 * 109.47124 * 210.00022 * 20 18 16 23 23 H 1.48499 * 109.46882 * 330.00424 * 20 18 16 24 24 C 1.53044 * 109.53985 * 61.36827 * 13 12 11 25 25 C 1.47209 * 120.80842 * 355.70417 * 10 8 6 26 26 C 1.53076 * 108.45125 * 67.49642 * 6 5 3 27 27 C 1.50180 * 109.89119 * 311.07973 * 26 6 5 28 28 O 1.21277 * 118.24561 * 197.60922 * 27 26 6 29 29 N 1.33356 * 123.50491 * 17.58546 * 27 26 6 30 30 H 1.09000 * 109.47508 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47369 * 300.00316 * 1 2 3 32 32 H 1.09008 * 109.47145 * 60.00140 * 1 2 3 33 33 H 1.09004 * 109.47369 * 239.99684 * 2 1 3 34 34 H 1.09002 * 109.47150 * 119.99141 * 2 1 3 35 35 H 1.09004 * 109.66005 * 69.19949 * 5 3 2 36 36 H 1.08999 * 109.57155 * 308.69880 * 5 3 2 37 37 H 1.08999 * 109.58651 * 113.81486 * 11 10 8 38 38 H 1.09004 * 109.58544 * 353.53732 * 11 10 8 39 39 H 1.09004 * 109.49550 * 65.24243 * 12 11 10 40 40 H 1.08998 * 109.49598 * 185.33892 * 12 11 10 41 41 H 1.09000 * 109.46590 * 301.34594 * 13 12 11 42 42 H 1.09004 * 109.47607 * 295.00338 * 14 13 12 43 43 H 1.09001 * 109.47608 * 55.00297 * 14 13 12 44 44 H 0.96997 * 119.99468 * 359.97438 * 15 14 13 45 45 H 0.96998 * 119.99913 * 179.97438 * 19 18 16 46 46 H 1.09001 * 109.49720 * 58.57915 * 24 13 12 47 47 H 1.08999 * 109.50086 * 178.68210 * 24 13 12 48 48 H 1.08994 * 109.53497 * 6.53175 * 25 10 8 49 49 H 1.09006 * 109.67307 * 246.22499 * 25 10 8 50 50 H 1.08991 * 109.40278 * 71.20904 * 26 6 5 51 51 H 1.09003 * 109.39570 * 191.04228 * 26 6 5 52 52 H 0.96993 * 117.94098 * 177.77739 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5980 1.9808 -0.8384 5 6 3.5620 1.4407 -0.1528 6 6 4.0793 2.8664 0.0738 7 1 5.1437 2.9116 -0.1565 8 6 3.3274 3.8258 -0.8124 9 8 2.3631 4.4213 -0.3808 10 7 3.7265 4.0218 -2.0848 11 6 2.9484 4.8785 -2.9899 12 6 2.6249 4.0903 -4.2630 13 6 3.9236 3.5551 -4.8706 14 6 3.6077 2.7962 -6.1609 15 7 4.8582 2.3865 -6.8051 16 6 4.8250 1.6888 -7.9829 17 1 3.8771 1.4402 -8.4368 18 6 6.0098 1.3011 -8.5936 19 7 7.1651 1.6046 -8.0407 20 14 5.9647 0.3487 -10.1999 21 1 5.9784 1.3002 -11.3400 22 1 7.1517 -0.5396 -10.2822 23 1 4.7278 -0.4713 -10.2545 24 6 4.6022 2.6098 -3.8766 25 6 4.9481 3.3812 -2.5990 26 6 3.8535 3.2362 1.5419 27 6 2.4419 2.9124 1.9392 28 8 1.9960 3.4261 2.9432 29 7 1.6524 2.0905 1.2467 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8901 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5137 0.8901 35 1 3.8295 1.1099 -1.1563 36 1 4.0022 0.7703 0.5854 37 1 3.5307 5.7636 -3.2460 38 1 2.0217 5.1797 -2.5013 39 1 1.9674 3.2563 -4.0174 40 1 2.1303 4.7451 -4.9805 41 1 4.5907 4.3879 -5.0931 42 1 3.0133 1.9130 -5.9269 43 1 3.0468 3.4434 -6.8352 44 1 5.7095 2.6102 -6.3976 45 1 7.9930 1.3334 -8.4671 46 1 3.9260 1.7898 -3.6346 47 1 5.5150 2.2109 -4.3190 48 1 5.3408 2.6924 -1.8512 49 1 5.6954 4.1425 -2.8229 50 1 4.5444 2.6715 2.1679 51 1 4.0309 4.3030 1.6780 52 1 0.7646 1.9127 1.5946 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205747067.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:48 Heat of formation + Delta-G solvation = -102.139155 kcal Electronic energy + Delta-G solvation = -31033.515051 eV Core-core repulsion = 27031.153847 eV Total energy + Delta-G solvation = -4002.361204 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.20177 -40.57344 -38.90642 -37.92530 -36.51577 -35.06004 -34.33457 -33.04182 -32.27273 -31.82997 -30.02267 -28.35992 -26.53925 -25.40654 -24.33293 -24.16499 -23.06872 -22.50895 -21.65292 -20.76279 -19.46771 -19.02137 -18.29343 -17.92019 -17.31924 -16.72405 -16.68175 -16.51271 -16.06770 -15.63451 -15.45864 -15.36235 -15.23880 -15.01297 -14.86166 -14.70438 -14.40696 -14.16759 -13.98262 -13.82379 -13.60408 -13.30474 -13.16400 -12.98188 -12.87731 -12.80980 -12.72234 -12.35428 -12.21493 -12.15316 -12.07968 -11.92808 -11.87565 -11.75543 -11.63367 -11.45253 -11.28602 -10.89660 -10.83932 -10.58993 -10.03927 -9.62516 -8.94330 -7.92301 -5.19384 1.49897 1.50614 1.57452 1.58798 1.71966 1.98851 2.38500 2.58492 3.34273 3.41547 3.51882 3.56551 3.73389 3.75265 3.79353 3.88981 3.97570 4.15143 4.16866 4.19652 4.30128 4.35810 4.44646 4.46345 4.54772 4.59418 4.63254 4.69654 4.75225 4.77801 4.80844 4.85547 4.89609 4.91842 5.00921 5.02393 5.10289 5.11331 5.14535 5.22354 5.22836 5.34820 5.36831 5.51231 5.58462 5.62628 5.83750 6.31039 6.42316 6.43171 7.16123 7.25681 7.38214 8.14662 8.38957 9.30860 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016796 B = 0.002630 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.679795 B =10643.232116 C =11220.814529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.128 4.128 3 C 0.137 3.863 4 H 0.054 0.946 5 C -0.120 4.120 6 C -0.111 4.111 7 H 0.144 0.856 8 C 0.513 3.487 9 O -0.578 6.578 10 N -0.603 5.603 11 C 0.115 3.885 12 C -0.113 4.113 13 C -0.085 4.085 14 C 0.157 3.843 15 N -0.741 5.741 16 C -0.244 4.244 17 H 0.070 0.930 18 C -0.071 4.071 19 N -0.965 5.965 20 Si 0.967 3.033 21 H -0.290 1.290 22 H -0.294 1.294 23 H -0.272 1.272 24 C -0.118 4.118 25 C 0.108 3.892 26 C -0.114 4.114 27 C 0.528 3.472 28 O -0.619 6.619 29 N -0.701 5.701 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.017 0.983 43 H 0.012 0.988 44 H 0.377 0.623 45 H 0.251 0.749 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.116 0.884 49 H 0.078 0.922 50 H 0.140 0.860 51 H 0.091 0.909 52 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.180 -1.663 18.145 19.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.166 4.166 3 C 0.032 3.968 4 H 0.072 0.928 5 C -0.158 4.158 6 C -0.132 4.132 7 H 0.161 0.839 8 C 0.303 3.697 9 O -0.457 6.457 10 N -0.335 5.335 11 C -0.007 4.007 12 C -0.152 4.152 13 C -0.103 4.103 14 C 0.031 3.969 15 N -0.384 5.384 16 C -0.376 4.376 17 H 0.088 0.912 18 C -0.263 4.263 19 N -0.616 5.616 20 Si 0.797 3.203 21 H -0.218 1.218 22 H -0.221 1.221 23 H -0.197 1.197 24 C -0.156 4.156 25 C -0.014 4.014 26 C -0.154 4.154 27 C 0.317 3.683 28 O -0.503 6.503 29 N -0.351 5.351 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.035 0.965 43 H 0.030 0.970 44 H 0.210 0.790 45 H 0.060 0.940 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.134 0.866 49 H 0.097 0.903 50 H 0.158 0.842 51 H 0.109 0.891 52 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -6.777 -1.137 18.612 19.840 hybrid contribution -0.223 -0.139 -1.142 1.171 sum -7.000 -1.276 17.471 18.864 Atomic orbital electron populations 1.21813 0.95766 1.02576 1.01392 1.21886 0.96328 0.94043 1.04374 1.21115 0.96361 0.94059 0.85247 0.92787 1.22047 0.93192 0.94209 1.06312 1.21613 1.03521 0.95019 0.92999 0.83866 1.21009 0.84235 0.82274 0.82229 1.90729 1.30049 1.50746 1.74217 1.48264 1.26486 1.48125 1.10613 1.21522 0.96647 0.92948 0.89622 1.21782 0.96807 1.00247 0.96330 1.21186 0.97210 0.97919 0.94032 1.20807 0.88207 0.95474 0.92416 1.42533 1.03968 1.66662 1.25214 1.19579 0.92525 1.26292 0.99200 0.91195 1.25452 0.95146 1.03367 1.02376 1.69779 0.96846 1.53246 1.41711 0.85237 0.76900 0.78173 0.80033 1.21767 1.22078 1.19676 1.21814 1.01283 0.97873 0.94632 1.22058 0.85384 0.97565 0.96404 1.21551 0.92975 1.04678 0.96178 1.20432 0.89379 0.76676 0.81805 1.90699 1.76209 1.53772 1.29618 1.45524 1.17975 1.46705 1.24899 0.91199 0.93241 0.93152 0.88931 0.90087 0.87412 0.86788 0.90855 0.90443 0.91781 0.90207 0.91648 0.96466 0.97033 0.79019 0.93998 0.91379 0.91413 0.86557 0.90328 0.84233 0.89079 0.77052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.76 71.98 0.70 -1.24 16 2 C -0.13 -1.39 5.57 30.59 0.17 -1.22 16 3 C 0.14 2.02 2.37 45.12 0.11 2.13 16 4 H 0.05 1.06 7.24 -2.39 -0.02 1.04 16 5 C -0.12 -1.21 4.85 30.70 0.15 -1.06 16 6 C -0.11 -1.44 2.21 -11.40 -0.03 -1.46 16 7 H 0.14 0.95 6.35 -2.39 -0.02 0.94 16 8 C 0.51 10.69 5.51 87.65 0.48 11.17 16 9 O -0.58 -17.09 14.00 -3.03 -0.04 -17.14 16 10 N -0.60 -11.56 2.98 -818.19 -2.44 -14.00 16 11 C 0.12 2.44 6.41 86.36 0.55 3.00 16 12 C -0.11 -2.50 5.36 30.67 0.16 -2.34 16 13 C -0.08 -2.26 2.19 -10.77 -0.02 -2.29 16 14 C 0.16 5.73 5.65 86.38 0.49 6.22 16 15 N -0.74 -34.93 5.32 -343.44 -1.83 -36.75 16 16 C -0.24 -13.05 9.99 84.03 0.84 -12.21 16 17 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 18 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 19 N -0.97 -56.13 13.06 21.65 0.28 -55.84 16 20 Si 0.97 44.48 29.55 68.60 2.03 46.51 16 21 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 22 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 24 C -0.12 -2.69 5.25 30.67 0.16 -2.53 16 25 C 0.11 1.74 6.28 86.31 0.54 2.28 16 26 C -0.11 -1.90 5.22 29.71 0.16 -1.74 16 27 C 0.53 13.02 6.39 87.71 0.56 13.58 16 28 O -0.62 -21.26 17.78 -3.02 -0.05 -21.31 16 29 N -0.70 -13.98 4.91 -446.56 -2.19 -16.17 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.64 6.67 -2.39 -0.02 0.62 16 32 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.11 0.88 7.84 -2.38 -0.02 0.86 16 36 H 0.11 0.66 8.11 -2.39 -0.02 0.64 16 37 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.08 1.86 7.03 -2.39 -0.02 1.84 16 39 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 43 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.38 18.55 6.84 -92.71 -0.63 17.92 16 45 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 46 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.07 1.90 7.15 -2.39 -0.02 1.88 16 48 H 0.12 1.14 5.17 -2.39 -0.01 1.13 16 49 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 50 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.09 1.79 8.10 -2.39 -0.02 1.77 16 52 H 0.39 7.96 7.04 -92.71 -0.65 7.31 16 Total: -1.00 -75.87 396.96 0.88 -74.98 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: -0.36 Total: 30.88 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 5.49 Total: 8.85 kcal Atomic # 7 Polarization: -116.59 SS G_CDS: -6.18 Total: -122.77 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -0.10 Total: -38.45 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -75.87 0.88 -74.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205747067.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.156 kcal (2) G-P(sol) polarization free energy of solvation -75.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds