Wall clock time and date at job start Tue Mar 31 2020 19:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46983 * 2 1 4 4 H 1.09007 * 115.54793 * 29.33105 * 3 2 1 5 5 C 1.53000 * 117.50349 * 243.62341 * 3 2 1 6 6 C 1.53003 * 117.50072 * 174.99701 * 3 2 1 7 7 H 1.09000 * 117.49568 * 359.97438 * 6 3 2 8 8 C 1.50700 * 117.50073 * 214.98183 * 6 3 2 9 9 O 1.21283 * 119.99803 * 0.02562 * 8 6 3 10 10 N 1.34777 * 119.99675 * 180.28026 * 8 6 3 11 11 C 1.46921 * 120.63392 * 359.43977 * 10 8 6 12 12 C 1.52760 * 109.00994 * 233.58899 * 11 10 8 13 13 C 1.53036 * 109.38235 * 305.58739 * 12 11 10 14 14 C 1.53001 * 109.45699 * 181.26235 * 13 12 11 15 15 N 1.46902 * 109.47396 * 64.93514 * 14 13 12 16 16 C 1.46895 * 111.00145 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47249 * 179.97438 * 16 15 14 18 18 O 1.21294 * 120.00034 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00309 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00163 * 180.02562 * 19 17 16 21 21 H 1.07993 * 119.99983 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99951 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99629 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99950 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47216 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47322 * 120.00042 * 24 22 20 27 27 H 1.48502 * 109.47349 * 240.00282 * 24 22 20 28 28 C 1.53035 * 109.53955 * 61.24292 * 13 12 11 29 29 C 1.46924 * 120.62813 * 179.72946 * 10 8 6 30 30 H 1.08993 * 109.47093 * 59.99969 * 1 2 3 31 31 H 1.09002 * 109.46619 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46905 * 299.99173 * 1 2 3 33 33 H 1.09004 * 109.47111 * 240.00642 * 2 1 3 34 34 H 1.08997 * 109.47799 * 120.00086 * 2 1 3 35 35 H 1.08994 * 117.49844 * 145.01754 * 5 3 2 36 36 H 1.09004 * 117.49532 * 0.02562 * 5 3 2 37 37 H 1.09004 * 109.58490 * 353.42409 * 11 10 8 38 38 H 1.09002 * 109.58518 * 113.84767 * 11 10 8 39 39 H 1.09005 * 109.56000 * 185.55371 * 12 11 10 40 40 H 1.09001 * 109.36136 * 65.50440 * 12 11 10 41 41 H 1.09000 * 109.44697 * 301.22548 * 13 12 11 42 42 H 1.09001 * 109.46937 * 184.93240 * 14 13 12 43 43 H 1.08999 * 109.47247 * 304.92999 * 14 13 12 44 44 H 1.00896 * 110.99701 * 303.95131 * 15 14 13 45 45 H 1.09003 * 109.47194 * 299.99653 * 16 15 14 46 46 H 1.09000 * 109.46741 * 59.99902 * 16 15 14 47 47 H 0.97001 * 119.99926 * 359.97438 * 19 17 16 48 48 H 0.97012 * 119.99401 * 180.02562 * 23 22 20 49 49 H 1.08994 * 109.50277 * 178.68099 * 28 13 12 50 50 H 1.08997 * 109.49664 * 58.58032 * 28 13 12 51 51 H 1.09006 * 109.58353 * 246.15683 * 29 10 8 52 52 H 1.09008 * 109.58903 * 6.57099 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1715 0.4818 5 6 2.8439 1.9077 -1.2158 6 6 3.5501 1.6580 0.1184 7 1 4.1803 0.7721 0.1966 8 6 4.0228 2.8621 0.8915 9 8 3.2156 3.6165 1.3920 10 7 5.3423 3.1034 1.0225 11 6 6.3321 2.1951 0.4276 12 6 7.3175 1.7559 1.5091 13 6 7.9212 2.9925 2.1786 14 6 8.9319 2.5547 3.2406 15 7 10.0597 1.8727 2.5918 16 6 11.0527 1.4378 3.5830 17 6 12.1917 0.7434 2.8819 18 8 12.1773 0.6223 1.6751 19 7 13.2257 0.2561 3.5957 20 6 14.2621 -0.3752 2.9577 21 1 14.2497 -0.4823 1.8832 22 6 15.3285 -0.8772 3.6937 23 7 15.3438 -0.7463 5.0012 24 14 16.7402 -1.7379 2.8245 25 1 16.4842 -1.7549 1.3618 26 1 18.0063 -1.0114 3.0975 27 1 16.8522 -3.1322 3.3231 28 6 6.8096 3.8109 2.8394 29 6 5.8183 4.2764 1.7682 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8935 -0.5138 0.8899 35 1 2.7211 2.9429 -1.5342 36 1 3.0092 1.1862 -2.0159 37 1 5.8261 1.3203 0.0191 38 1 6.8715 2.7118 -0.3663 39 1 8.1125 1.1613 1.0587 40 1 6.7931 1.1579 2.2545 41 1 8.4242 3.6024 1.4282 42 1 9.2971 3.4303 3.7775 43 1 8.4501 1.8735 3.9419 44 1 9.7396 1.0947 2.0348 45 1 11.4325 2.3059 4.1219 46 1 10.5858 0.7489 4.2869 47 1 13.2371 0.3526 4.5608 48 1 16.0885 -1.0965 5.5149 49 1 7.2429 4.6790 3.3360 50 1 6.2900 3.1936 3.5722 51 1 6.3149 4.9664 1.0859 52 1 4.9735 4.7746 2.2440 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206330525.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:45 Heat of formation + Delta-G solvation = -64.231215 kcal Electronic energy + Delta-G solvation = -28653.329319 eV Core-core repulsion = 24652.611927 eV Total energy + Delta-G solvation = -4000.717393 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.71705 -38.79452 -38.15538 -37.14272 -35.54611 -33.93496 -32.94412 -32.35425 -31.38376 -31.19842 -28.23092 -26.16990 -24.89473 -24.17962 -23.69949 -23.54843 -21.99855 -20.96921 -20.38231 -19.27222 -19.06071 -17.91290 -17.59096 -16.40613 -16.24693 -15.69690 -15.50150 -15.09490 -14.86321 -14.62386 -14.56240 -14.49704 -14.28116 -14.07383 -13.79730 -13.61219 -13.18762 -13.14687 -12.83336 -12.66755 -12.54149 -12.49570 -12.38594 -11.85073 -11.73083 -11.60346 -11.52912 -11.48760 -11.42759 -11.08899 -10.93873 -10.69599 -10.66099 -10.62416 -10.35553 -10.33787 -10.23565 -9.96716 -9.53303 -8.91495 -8.46843 -8.06784 -7.97061 -6.43112 -3.83922 2.21273 2.65909 3.15235 3.25878 3.33033 3.43424 3.89634 4.03409 4.07433 4.28888 4.33260 4.35071 4.46843 4.61574 4.65498 4.78491 4.79251 4.85927 4.92915 5.01979 5.03627 5.10596 5.16919 5.23599 5.26104 5.29358 5.37609 5.45514 5.46395 5.51900 5.55479 5.59288 5.64880 5.68689 5.72019 5.75049 5.77129 5.80575 5.85313 5.96121 5.98559 5.99802 6.21937 6.28746 6.29032 7.12226 7.21211 7.54092 7.65574 7.91831 8.05338 8.59917 9.16627 9.53165 10.04433 10.74674 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018806 B = 0.001700 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.523596 B =16462.386606 C =17327.640635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.118 4.118 4 H 0.117 0.883 5 C -0.147 4.147 6 C -0.194 4.194 7 H 0.125 0.875 8 C 0.546 3.454 9 O -0.547 6.547 10 N -0.606 5.606 11 C 0.108 3.892 12 C -0.136 4.136 13 C -0.085 4.085 14 C 0.064 3.936 15 N -0.669 5.669 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 C -0.128 4.128 29 C 0.112 3.888 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.025 0.975 44 H 0.347 0.653 45 H 0.086 0.914 46 H 0.042 0.958 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.078 0.922 50 H 0.065 0.935 51 H 0.069 0.931 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.589 5.188 -6.514 26.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.136 4.136 4 H 0.135 0.865 5 C -0.184 4.184 6 C -0.215 4.215 7 H 0.143 0.857 8 C 0.334 3.666 9 O -0.425 6.425 10 N -0.339 5.339 11 C -0.015 4.015 12 C -0.174 4.174 13 C -0.104 4.104 14 C -0.066 4.066 15 N -0.302 5.302 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.166 4.166 29 C -0.010 4.010 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.044 0.956 44 H 0.167 0.833 45 H 0.104 0.896 46 H 0.060 0.940 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.096 0.904 50 H 0.084 0.916 51 H 0.087 0.913 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -25.528 6.024 -7.074 27.166 hybrid contribution 0.653 -1.181 0.829 1.584 sum -24.875 4.842 -6.245 26.100 Atomic orbital electron populations 1.21737 0.95121 1.01714 1.02124 1.21165 0.96338 0.93547 1.02263 1.22491 0.91327 0.98781 1.01016 0.86496 1.23100 1.01898 1.03166 0.90278 1.22349 0.97691 0.99130 1.02297 0.85676 1.19662 0.81756 0.85501 0.79641 1.90673 1.53522 1.49087 1.49181 1.48053 1.05361 1.26572 1.53908 1.21730 0.90244 0.93630 0.95847 1.21963 0.98738 0.98275 0.98417 1.21144 0.94649 0.96507 0.98082 1.21992 0.90814 0.98614 0.95136 1.60110 1.12969 1.33625 1.23502 1.21669 0.93532 0.99253 0.93799 1.19819 0.84850 0.84595 0.88112 1.90515 1.80020 1.62156 1.14126 1.41876 1.18165 1.50471 1.09552 1.19760 0.97149 1.31806 0.94182 0.87852 1.25268 0.99131 0.98088 0.95489 1.69626 1.32829 1.46654 1.05177 0.85796 0.80343 0.78623 0.79555 1.19219 1.20731 1.20786 1.21934 0.96256 1.00616 0.97839 1.21615 0.98256 0.87188 0.93963 0.92527 0.92553 0.92508 0.91563 0.91364 0.88348 0.87690 0.89522 0.90816 0.89673 0.91704 0.89683 0.90982 0.95642 0.83250 0.89627 0.93991 0.77465 0.91926 0.90364 0.91582 0.91296 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.87 37.16 0.37 -0.46 16 2 C -0.10 -0.58 6.22 -26.73 -0.17 -0.74 16 3 C -0.12 -0.90 5.25 -90.62 -0.48 -1.38 16 4 H 0.12 1.09 7.60 -51.92 -0.39 0.70 16 5 C -0.15 -1.00 9.88 -26.73 -0.26 -1.26 16 6 C -0.19 -1.57 4.85 -91.77 -0.45 -2.02 16 7 H 0.13 0.83 6.56 -51.93 -0.34 0.49 16 8 C 0.55 5.97 7.48 -10.98 -0.08 5.89 16 9 O -0.55 -7.83 15.67 5.55 0.09 -7.74 16 10 N -0.61 -5.77 2.98 -173.03 -0.52 -6.29 16 11 C 0.11 0.86 6.32 -3.94 -0.02 0.83 16 12 C -0.14 -1.22 5.14 -26.84 -0.14 -1.36 16 13 C -0.08 -0.83 2.36 -90.58 -0.21 -1.04 16 14 C 0.06 0.75 5.14 -3.82 -0.02 0.73 16 15 N -0.67 -10.39 6.12 -115.06 -0.70 -11.09 16 16 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 17 C 0.44 10.33 7.82 -10.99 -0.09 10.24 16 18 O -0.58 -15.68 15.78 5.55 0.09 -15.59 16 19 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 20 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 24 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 C -0.13 -1.11 5.36 -26.61 -0.14 -1.25 16 29 C 0.11 1.03 6.43 -3.71 -0.02 1.01 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.34 7.88 -51.93 -0.41 -0.07 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.53 8.03 -51.93 -0.42 0.11 16 37 H 0.09 0.56 5.51 -51.93 -0.29 0.27 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.83 6.62 -51.93 -0.34 0.48 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.35 5.48 6.65 -39.29 -0.26 5.22 16 45 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 48 H 0.27 6.93 8.31 -40.81 -0.34 6.59 16 49 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 51 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.09 0.94 7.01 -51.92 -0.36 0.58 16 LS Contribution 414.58 15.07 6.25 6.25 Total: -1.00 -32.78 414.58 -10.13 -42.92 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -8.99 Total: 11.61 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -1.99 Total: 2.06 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: -0.55 Total: -55.40 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: 0.17 Total: -23.34 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.78 -10.13 -42.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206330525.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.316 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds