Wall clock time and date at job start Tue Mar 31 2020 19:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46816 * 2 1 4 4 H 1.08997 * 109.87577 * 305.00936 * 3 2 1 5 5 C 1.54323 * 109.88487 * 66.02573 * 3 2 1 6 6 C 1.55155 * 102.94547 * 141.60654 * 5 3 2 7 7 C 1.54909 * 101.58146 * 324.50252 * 6 5 3 8 8 N 1.47026 * 109.88109 * 183.99270 * 3 2 1 9 9 C 1.34773 * 125.64918 * 61.60856 * 8 3 2 10 10 O 1.21348 * 120.00186 * 6.27451 * 9 8 3 11 11 C 1.49449 * 119.99908 * 186.27185 * 9 8 3 12 12 O 1.21350 * 120.00351 * 6.69467 * 11 9 8 13 13 N 1.34785 * 119.99899 * 186.69250 * 11 9 8 14 14 C 1.46927 * 120.62818 * 188.36371 * 13 11 9 15 15 C 1.52761 * 109.00664 * 233.58333 * 14 13 11 16 16 C 1.53040 * 109.38512 * 305.58927 * 15 14 13 17 17 C 1.53003 * 109.46263 * 181.26094 * 16 15 14 18 18 N 1.46494 * 109.46849 * 64.93164 * 17 16 15 19 19 C 1.36937 * 119.99954 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99805 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00499 * 179.97438 * 19 18 17 22 22 N 1.31618 * 119.99450 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00365 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47112 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47038 * 120.00167 * 23 21 19 26 26 H 1.48501 * 109.47382 * 240.00361 * 23 21 19 27 27 C 1.53045 * 109.53453 * 61.23990 * 16 15 14 28 28 C 1.46925 * 120.62822 * 8.64396 * 13 11 9 29 29 H 1.08999 * 109.46776 * 184.68749 * 1 2 3 30 30 H 1.08995 * 109.47360 * 304.68988 * 1 2 3 31 31 H 1.08995 * 109.47108 * 64.69224 * 1 2 3 32 32 H 1.09004 * 109.47594 * 240.00137 * 2 1 3 33 33 H 1.09001 * 109.47578 * 119.99661 * 2 1 3 34 34 H 1.08994 * 110.72288 * 259.97384 * 5 3 2 35 35 H 1.09003 * 110.71835 * 23.07046 * 5 3 2 36 36 H 1.09002 * 111.00043 * 82.57120 * 6 5 3 37 37 H 1.08997 * 111.00317 * 206.38828 * 6 5 3 38 38 H 1.08997 * 110.37025 * 155.84993 * 7 6 5 39 39 H 1.09008 * 110.36473 * 278.05346 * 7 6 5 40 40 H 1.08993 * 109.58718 * 353.41909 * 14 13 11 41 41 H 1.08999 * 109.58233 * 113.84753 * 14 13 11 42 42 H 1.09001 * 109.56548 * 185.55722 * 15 14 13 43 43 H 1.09002 * 109.35872 * 65.50316 * 15 14 13 44 44 H 1.08997 * 109.44927 * 301.22743 * 16 15 14 45 45 H 1.08992 * 109.47061 * 184.93376 * 17 16 15 46 46 H 1.09009 * 109.46769 * 304.93427 * 17 16 15 47 47 H 0.96999 * 120.00170 * 0.02562 * 18 17 16 48 48 H 0.97006 * 119.99897 * 179.97438 * 22 21 19 49 49 H 1.09006 * 109.49468 * 178.68642 * 27 16 15 50 50 H 1.08998 * 109.52646 * 58.60721 * 27 16 15 51 51 H 1.08996 * 109.58441 * 246.15151 * 28 13 11 52 52 H 1.08993 * 109.58816 * 6.58416 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6090 1.9879 -0.8396 5 6 1.6589 2.1340 1.3260 6 6 2.9080 2.9999 1.6379 7 6 4.0521 2.0936 1.1190 8 7 3.5070 1.4543 -0.0963 9 6 4.2308 0.9623 -1.1211 10 8 3.6722 0.5593 -2.1202 11 6 5.7216 0.9131 -1.0272 12 8 6.2738 1.2011 0.0142 13 7 6.4527 0.5487 -2.0993 14 6 7.8985 0.3183 -1.9761 15 6 8.6282 1.1692 -3.0139 16 6 8.0603 0.8728 -4.4038 17 6 8.8112 1.7010 -5.4485 18 7 10.2103 1.2698 -5.4998 19 6 11.0812 1.8728 -6.3675 20 1 10.7367 2.6666 -7.0138 21 6 12.4071 1.4647 -6.4158 22 7 12.8270 0.4977 -5.6278 23 14 13.5950 2.2868 -7.6000 24 1 12.8797 3.3363 -8.3697 25 1 14.7072 2.9059 -6.8353 26 1 14.1424 1.2723 -8.5362 27 6 6.5740 1.2360 -4.4375 28 6 5.8200 0.3804 -3.4146 29 1 -0.3633 -1.0242 0.0840 30 1 -0.3634 0.5848 0.8449 31 1 -0.3633 0.4393 -0.9290 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.7776 2.7616 1.1944 35 1 1.4917 1.3966 2.1112 36 1 2.8769 3.9419 1.0904 37 1 3.0036 3.1760 2.7093 38 1 4.9278 2.6931 0.8703 39 1 4.3080 1.3410 1.8649 40 1 8.2295 0.6000 -0.9766 41 1 8.1169 -0.7350 -2.1523 42 1 9.6920 0.9323 -2.9975 43 1 8.4863 2.2244 -2.7803 44 1 8.1802 -0.1874 -4.6263 45 1 8.3505 1.5570 -6.4258 46 1 8.7657 2.7558 -5.1771 47 1 10.5198 0.5571 -4.9191 48 1 13.7535 0.2122 -5.6618 49 1 6.1757 1.0466 -5.4343 50 1 6.4509 2.2906 -4.1909 51 1 5.8656 -0.6677 -3.7105 52 1 4.7802 0.7031 -3.3639 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206820734.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:23 Heat of formation + Delta-G solvation = -50.881530 kcal Electronic energy + Delta-G solvation = -30179.334426 eV Core-core repulsion = 26179.195919 eV Total energy + Delta-G solvation = -4000.138507 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.24216 -39.61762 -37.93935 -37.74229 -34.96462 -33.86678 -32.81370 -31.96346 -31.03148 -30.40194 -28.29219 -27.10981 -25.55198 -23.93367 -23.63313 -22.88854 -22.21193 -21.63104 -20.74479 -19.86182 -19.08155 -17.49139 -17.31248 -16.92212 -16.63933 -15.91872 -15.61114 -15.05686 -14.77584 -14.57877 -14.38389 -14.14208 -14.06996 -13.82889 -13.67834 -13.61566 -13.41598 -13.21811 -12.92576 -12.74011 -12.50869 -12.34041 -12.20635 -12.04284 -11.79978 -11.68619 -11.61873 -11.33833 -11.14015 -11.04023 -10.96822 -10.86681 -10.83222 -10.38908 -10.32052 -10.15894 -9.93072 -9.68370 -9.27260 -8.99273 -8.84974 -8.67344 -6.88699 -5.74675 -3.02582 1.28381 2.06950 3.03925 3.20306 3.44626 3.50270 3.52504 3.92530 4.12722 4.25154 4.37447 4.61112 4.69236 4.77076 4.85821 4.96028 5.00133 5.08123 5.10303 5.12339 5.24827 5.26940 5.32001 5.45522 5.45563 5.48303 5.52645 5.58943 5.64863 5.65744 5.68872 5.71104 5.74061 5.82792 5.95489 5.99058 6.02015 6.07633 6.15191 6.22903 6.32563 6.36589 6.51360 6.67900 6.83911 6.91234 6.95841 7.18452 7.51060 7.72870 7.87411 8.44741 9.55806 10.14466 10.49165 11.48423 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028360 B = 0.002072 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.081720 B =13511.565445 C =13875.870484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C 0.135 3.865 4 H 0.082 0.918 5 C -0.127 4.127 6 C -0.138 4.138 7 C 0.104 3.896 8 N -0.589 5.589 9 C 0.525 3.475 10 O -0.511 6.511 11 C 0.506 3.494 12 O -0.525 6.525 13 N -0.573 5.573 14 C 0.107 3.893 15 C -0.123 4.123 16 C -0.096 4.096 17 C 0.158 3.842 18 N -0.732 5.732 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.934 5.934 23 Si 0.907 3.093 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.126 4.126 28 C 0.071 3.929 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.019 0.981 46 H 0.017 0.983 47 H 0.383 0.617 48 H 0.254 0.746 49 H 0.077 0.923 50 H 0.063 0.937 51 H 0.069 0.931 52 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.570 1.084 16.403 31.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.175 4.175 3 C 0.032 3.968 4 H 0.100 0.900 5 C -0.165 4.165 6 C -0.176 4.176 7 C -0.019 4.019 8 N -0.323 5.323 9 C 0.309 3.691 10 O -0.388 6.388 11 C 0.288 3.712 12 O -0.402 6.402 13 N -0.306 5.306 14 C -0.014 4.014 15 C -0.161 4.161 16 C -0.115 4.115 17 C 0.031 3.969 18 N -0.376 5.376 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.583 5.583 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.165 4.165 28 C -0.050 4.050 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.037 0.963 46 H 0.035 0.965 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.095 0.905 50 H 0.082 0.918 51 H 0.087 0.913 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -26.438 1.100 16.216 31.034 hybrid contribution 1.020 0.104 -0.573 1.174 sum -25.418 1.204 15.644 29.871 Atomic orbital electron populations 1.21711 0.94769 1.02040 1.02002 1.21902 0.96499 0.95859 1.03208 1.21769 0.79163 0.97058 0.98800 0.90043 1.22746 0.98482 0.99151 0.96131 1.22872 0.94139 0.98409 1.02161 1.22587 0.97180 0.96099 0.85993 1.48463 1.07140 1.57211 1.19481 1.19976 0.88234 0.78583 0.82318 1.90505 1.72299 1.47639 1.28371 1.19871 0.87581 0.79235 0.84500 1.90721 1.72487 1.47735 1.29280 1.48052 1.09098 1.64599 1.08826 1.21800 0.77774 1.00295 1.01532 1.21836 1.00866 0.99774 0.93604 1.21347 0.93791 1.00960 0.95412 1.20669 0.86061 0.95426 0.94765 1.42388 1.04142 1.43932 1.47183 1.19284 0.90196 1.13737 1.13572 0.91212 1.24737 0.97254 0.99151 1.00038 1.69667 1.15922 1.31189 1.41524 0.86117 0.81261 0.78490 0.80340 1.20603 1.21914 1.21909 1.21938 0.95569 0.99955 0.99004 1.22863 1.00700 1.00865 0.80595 0.92389 0.92473 0.92454 0.90597 0.91726 0.89788 0.90139 0.90433 0.89435 0.88953 0.90585 0.88993 0.90861 0.89165 0.91819 0.90942 0.96349 0.96469 0.78272 0.93610 0.90467 0.91817 0.91281 0.84841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.82 37.16 0.36 -0.47 16 2 C -0.14 -1.04 5.39 -26.73 -0.14 -1.19 16 3 C 0.13 1.04 2.87 -66.95 -0.19 0.85 16 4 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 5 C -0.13 -0.64 5.48 -24.90 -0.14 -0.78 16 6 C -0.14 -0.75 7.09 -24.58 -0.17 -0.93 16 7 C 0.10 0.88 5.78 -2.35 -0.01 0.86 16 8 N -0.59 -5.94 3.08 -163.26 -0.50 -6.44 16 9 C 0.52 6.58 7.48 -11.59 -0.09 6.50 16 10 O -0.51 -6.93 12.42 5.50 0.07 -6.86 16 11 C 0.51 7.02 7.66 -11.58 -0.09 6.93 16 12 O -0.53 -7.92 13.57 5.50 0.07 -7.85 16 13 N -0.57 -7.86 2.98 -173.54 -0.52 -8.38 16 14 C 0.11 1.51 6.42 -3.93 -0.03 1.48 16 15 C -0.12 -1.95 5.23 -26.83 -0.14 -2.09 16 16 C -0.10 -1.56 2.19 -90.57 -0.20 -1.76 16 17 C 0.16 3.22 5.65 -4.04 -0.02 3.20 16 18 N -0.73 -18.63 5.32 -59.91 -0.32 -18.94 16 19 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 21 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 22 N -0.93 -28.41 13.06 55.49 0.72 -27.68 16 23 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 C -0.13 -1.71 5.36 -26.61 -0.14 -1.85 16 28 C 0.07 0.91 5.99 -3.71 -0.02 0.89 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.25 7.30 -51.93 -0.38 -0.13 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.76 6.95 -51.93 -0.36 0.40 16 33 H 0.06 0.49 8.05 -51.93 -0.42 0.07 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.36 7.79 -51.93 -0.40 -0.05 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 0.92 6.77 -51.93 -0.35 0.57 16 39 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.09 1.31 7.00 -51.93 -0.36 0.95 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.09 1.62 7.15 -51.93 -0.37 1.25 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 47 H 0.38 10.13 6.84 -40.82 -0.28 9.85 16 48 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 49 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 50 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 51 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 52 H 0.13 1.75 4.31 -54.79 -0.24 1.51 16 LS Contribution 399.60 15.07 6.02 6.02 Total: -1.00 -32.28 399.60 -9.79 -42.07 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -9.05 Total: 6.17 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -1.27 Total: 4.23 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: -0.61 Total: -61.45 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.14 Total: -14.71 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.28 -9.79 -42.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206820734.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.811 kcal (2) G-P(sol) polarization free energy of solvation -32.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds