Wall clock time and date at job start Tue Mar 31 2020 19:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46816 * 2 1 4 4 H 1.08997 * 109.87577 * 305.00936 * 3 2 1 5 5 C 1.54323 * 109.88487 * 66.02573 * 3 2 1 6 6 C 1.55155 * 102.94547 * 141.60654 * 5 3 2 7 7 C 1.54909 * 101.58146 * 324.50252 * 6 5 3 8 8 N 1.47026 * 109.88109 * 183.99270 * 3 2 1 9 9 C 1.34773 * 125.64918 * 61.60856 * 8 3 2 10 10 O 1.21348 * 120.00186 * 6.27451 * 9 8 3 11 11 C 1.49449 * 119.99908 * 186.27185 * 9 8 3 12 12 O 1.21350 * 120.00351 * 6.69467 * 11 9 8 13 13 N 1.34785 * 119.99899 * 186.69250 * 11 9 8 14 14 C 1.46927 * 120.62818 * 188.36371 * 13 11 9 15 15 C 1.52761 * 109.00664 * 233.58333 * 14 13 11 16 16 C 1.53040 * 109.38512 * 305.58927 * 15 14 13 17 17 C 1.53003 * 109.46263 * 181.26094 * 16 15 14 18 18 N 1.46494 * 109.46849 * 64.93164 * 17 16 15 19 19 C 1.36937 * 119.99954 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99805 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00499 * 179.97438 * 19 18 17 22 22 N 1.31618 * 119.99450 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00365 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47112 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47038 * 120.00167 * 23 21 19 26 26 H 1.48501 * 109.47382 * 240.00361 * 23 21 19 27 27 C 1.53045 * 109.53453 * 61.23990 * 16 15 14 28 28 C 1.46925 * 120.62822 * 8.64396 * 13 11 9 29 29 H 1.08999 * 109.46776 * 184.68749 * 1 2 3 30 30 H 1.08995 * 109.47360 * 304.68988 * 1 2 3 31 31 H 1.08995 * 109.47108 * 64.69224 * 1 2 3 32 32 H 1.09004 * 109.47594 * 240.00137 * 2 1 3 33 33 H 1.09001 * 109.47578 * 119.99661 * 2 1 3 34 34 H 1.08994 * 110.72288 * 259.97384 * 5 3 2 35 35 H 1.09003 * 110.71835 * 23.07046 * 5 3 2 36 36 H 1.09002 * 111.00043 * 82.57120 * 6 5 3 37 37 H 1.08997 * 111.00317 * 206.38828 * 6 5 3 38 38 H 1.08997 * 110.37025 * 155.84993 * 7 6 5 39 39 H 1.09008 * 110.36473 * 278.05346 * 7 6 5 40 40 H 1.08993 * 109.58718 * 353.41909 * 14 13 11 41 41 H 1.08999 * 109.58233 * 113.84753 * 14 13 11 42 42 H 1.09001 * 109.56548 * 185.55722 * 15 14 13 43 43 H 1.09002 * 109.35872 * 65.50316 * 15 14 13 44 44 H 1.08997 * 109.44927 * 301.22743 * 16 15 14 45 45 H 1.08992 * 109.47061 * 184.93376 * 17 16 15 46 46 H 1.09009 * 109.46769 * 304.93427 * 17 16 15 47 47 H 0.96999 * 120.00170 * 0.02562 * 18 17 16 48 48 H 0.97006 * 119.99897 * 179.97438 * 22 21 19 49 49 H 1.09006 * 109.49468 * 178.68642 * 27 16 15 50 50 H 1.08998 * 109.52646 * 58.60721 * 27 16 15 51 51 H 1.08996 * 109.58441 * 246.15151 * 28 13 11 52 52 H 1.08993 * 109.58816 * 6.58416 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6090 1.9879 -0.8396 5 6 1.6589 2.1340 1.3260 6 6 2.9080 2.9999 1.6379 7 6 4.0521 2.0936 1.1190 8 7 3.5070 1.4543 -0.0963 9 6 4.2308 0.9623 -1.1211 10 8 3.6722 0.5593 -2.1202 11 6 5.7216 0.9131 -1.0272 12 8 6.2738 1.2011 0.0142 13 7 6.4527 0.5487 -2.0993 14 6 7.8985 0.3183 -1.9761 15 6 8.6282 1.1692 -3.0139 16 6 8.0603 0.8728 -4.4038 17 6 8.8112 1.7010 -5.4485 18 7 10.2103 1.2698 -5.4998 19 6 11.0812 1.8728 -6.3675 20 1 10.7367 2.6666 -7.0138 21 6 12.4071 1.4647 -6.4158 22 7 12.8270 0.4977 -5.6278 23 14 13.5950 2.2868 -7.6000 24 1 12.8797 3.3363 -8.3697 25 1 14.7072 2.9059 -6.8353 26 1 14.1424 1.2723 -8.5362 27 6 6.5740 1.2360 -4.4375 28 6 5.8200 0.3804 -3.4146 29 1 -0.3633 -1.0242 0.0840 30 1 -0.3634 0.5848 0.8449 31 1 -0.3633 0.4393 -0.9290 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.7776 2.7616 1.1944 35 1 1.4917 1.3966 2.1112 36 1 2.8769 3.9419 1.0904 37 1 3.0036 3.1760 2.7093 38 1 4.9278 2.6931 0.8703 39 1 4.3080 1.3410 1.8649 40 1 8.2295 0.6000 -0.9766 41 1 8.1169 -0.7350 -2.1523 42 1 9.6920 0.9323 -2.9975 43 1 8.4863 2.2244 -2.7803 44 1 8.1802 -0.1874 -4.6263 45 1 8.3505 1.5570 -6.4258 46 1 8.7657 2.7558 -5.1771 47 1 10.5198 0.5571 -4.9191 48 1 13.7535 0.2122 -5.6618 49 1 6.1757 1.0466 -5.4343 50 1 6.4509 2.2906 -4.1909 51 1 5.8656 -0.6677 -3.7105 52 1 4.7802 0.7031 -3.3639 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206820734.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:21 Heat of formation + Delta-G solvation = -70.428785 kcal Electronic energy + Delta-G solvation = -30180.182059 eV Core-core repulsion = 26179.195919 eV Total energy + Delta-G solvation = -4000.986139 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.21143 -40.54861 -38.99120 -38.80781 -36.61727 -34.60496 -34.37011 -32.64843 -32.29304 -32.19003 -28.87624 -28.54321 -26.70517 -25.42325 -24.74086 -23.80330 -23.22619 -22.79529 -21.71262 -20.89518 -20.11330 -19.17165 -18.35669 -18.12988 -17.61317 -16.95695 -16.66402 -16.42998 -15.87022 -15.66712 -15.54089 -15.42503 -15.30880 -15.11342 -14.75131 -14.52982 -14.45325 -14.27783 -13.96403 -13.89207 -13.56131 -13.42891 -13.20954 -13.00616 -12.93879 -12.79001 -12.62709 -12.55747 -12.22783 -12.16041 -12.11886 -12.08924 -11.88547 -11.70526 -11.59641 -11.48093 -11.44436 -11.38788 -10.94473 -10.27052 -9.92145 -9.74830 -8.99378 -7.95839 -5.24086 0.25638 1.13979 1.46454 1.47154 1.57334 2.00709 2.26644 2.55352 3.02634 3.37558 3.57887 3.64606 3.75422 3.80012 3.83388 3.86544 4.04862 4.15040 4.22143 4.27088 4.30038 4.32692 4.42271 4.46748 4.56296 4.57560 4.68421 4.72520 4.79628 4.82060 4.86436 4.92026 4.92981 4.98134 5.01718 5.05683 5.09572 5.10868 5.14895 5.16122 5.21204 5.25258 5.34193 5.42578 5.46043 5.48295 5.51809 5.98426 6.16317 6.27000 6.52176 6.84129 7.33302 8.09576 8.33523 9.27825 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028360 B = 0.002072 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.081720 B =13511.565445 C =13875.870484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C 0.127 3.873 4 H 0.077 0.923 5 C -0.118 4.118 6 C -0.128 4.128 7 C 0.097 3.903 8 N -0.585 5.585 9 C 0.521 3.479 10 O -0.526 6.526 11 C 0.502 3.498 12 O -0.541 6.541 13 N -0.576 5.576 14 C 0.115 3.885 15 C -0.114 4.114 16 C -0.086 4.086 17 C 0.158 3.842 18 N -0.743 5.743 19 C -0.244 4.244 20 H 0.073 0.927 21 C -0.077 4.077 22 N -0.968 5.968 23 Si 0.973 3.027 24 H -0.267 1.267 25 H -0.293 1.293 26 H -0.292 1.292 27 C -0.117 4.117 28 C 0.077 3.923 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.022 0.978 46 H 0.014 0.986 47 H 0.375 0.625 48 H 0.251 0.749 49 H 0.092 0.908 50 H 0.062 0.938 51 H 0.077 0.923 52 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.799 1.889 17.059 33.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.025 3.975 4 H 0.095 0.905 5 C -0.155 4.155 6 C -0.166 4.166 7 C -0.025 4.025 8 N -0.318 5.318 9 C 0.304 3.696 10 O -0.405 6.405 11 C 0.285 3.715 12 O -0.420 6.420 13 N -0.309 5.309 14 C -0.007 4.007 15 C -0.152 4.152 16 C -0.104 4.104 17 C 0.031 3.969 18 N -0.386 5.386 19 C -0.376 4.376 20 H 0.091 0.909 21 C -0.269 4.269 22 N -0.619 5.619 23 Si 0.803 3.197 24 H -0.192 1.192 25 H -0.220 1.220 26 H -0.219 1.219 27 C -0.155 4.155 28 C -0.043 4.043 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.040 0.960 46 H 0.032 0.968 47 H 0.208 0.792 48 H 0.060 0.940 49 H 0.111 0.889 50 H 0.081 0.919 51 H 0.096 0.904 52 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -28.724 1.934 16.884 33.375 hybrid contribution 1.661 -0.121 -0.732 1.819 sum -27.064 1.812 16.152 31.569 Atomic orbital electron populations 1.21684 0.93002 1.02590 1.02736 1.21851 0.97977 0.95447 1.01809 1.22031 0.77500 0.97452 1.00467 0.90464 1.22775 0.98899 0.99306 0.94546 1.22866 0.92713 0.97690 1.03331 1.22711 0.97970 0.96402 0.85369 1.48629 1.08332 1.55783 1.19059 1.19713 0.87605 0.79254 0.82987 1.90485 1.72205 1.48775 1.29080 1.20212 0.88412 0.78676 0.84196 1.90708 1.73033 1.48377 1.29838 1.48115 1.08843 1.64583 1.09326 1.21653 0.78074 1.00368 1.00557 1.21684 0.99664 0.99624 0.94244 1.21233 0.95133 0.99991 0.94088 1.20817 0.84064 0.95786 0.96213 1.42582 1.05885 1.43611 1.46551 1.19667 0.90917 1.13495 1.13550 0.90862 1.25567 0.99041 1.00188 1.02108 1.69817 1.16022 1.32776 1.43302 0.85070 0.78822 0.77655 0.78190 1.19155 1.22042 1.21942 1.21873 0.93387 1.00026 1.00232 1.22868 1.00509 1.01170 0.79782 0.92187 0.90539 0.92669 0.93420 0.91689 0.87594 0.88954 0.90255 0.87283 0.90795 0.90594 0.89323 0.89842 0.91599 0.92620 0.91163 0.95980 0.96783 0.79230 0.94000 0.88908 0.91928 0.90449 0.84524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.82 71.98 0.71 -0.62 16 2 C -0.13 -1.88 5.39 30.59 0.16 -1.71 16 3 C 0.13 1.77 2.87 45.34 0.13 1.90 16 4 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 5 C -0.12 -0.82 5.48 31.78 0.17 -0.64 16 6 C -0.13 -1.07 7.09 31.99 0.23 -0.85 16 7 C 0.10 1.55 5.78 86.79 0.50 2.06 16 8 N -0.59 -11.39 3.08 -788.80 -2.43 -13.81 16 9 C 0.52 12.97 7.48 87.27 0.65 13.62 16 10 O -0.53 -14.14 12.42 -3.24 -0.04 -14.18 16 11 C 0.50 13.93 7.66 87.27 0.67 14.60 16 12 O -0.54 -16.48 13.57 -3.25 -0.04 -16.53 16 13 N -0.58 -15.65 2.98 -821.33 -2.45 -18.10 16 14 C 0.12 3.25 6.42 86.22 0.55 3.80 16 15 C -0.11 -3.69 5.23 30.53 0.16 -3.53 16 16 C -0.09 -2.76 2.19 -10.76 -0.02 -2.78 16 17 C 0.16 6.41 5.65 86.38 0.49 6.90 16 18 N -0.74 -38.33 5.32 -343.46 -1.83 -40.16 16 19 C -0.24 -13.92 9.99 84.03 0.84 -13.08 16 20 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 21 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 22 N -0.97 -59.84 13.06 21.65 0.28 -59.56 16 23 Si 0.97 46.86 29.55 68.60 2.03 48.88 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 27 C -0.12 -3.03 5.36 30.67 0.16 -2.86 16 28 C 0.08 1.92 5.99 86.36 0.52 2.43 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.08 0.43 7.30 -2.39 -0.02 0.41 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.95 6.95 -2.38 -0.02 0.93 16 33 H 0.06 0.90 8.05 -2.39 -0.02 0.88 16 34 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.09 0.48 7.79 -2.39 -0.02 0.46 16 36 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.07 1.47 6.77 -2.39 -0.02 1.45 16 39 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.09 2.57 7.00 -2.39 -0.02 2.55 16 41 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.07 2.47 7.15 -2.39 -0.02 2.45 16 43 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.07 2.32 8.14 -2.39 -0.02 2.31 16 45 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 47 H 0.38 20.36 6.84 -92.71 -0.63 19.72 16 48 H 0.25 14.99 8.31 -92.70 -0.77 14.22 16 49 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 50 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 51 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 52 H 0.14 3.45 4.31 -47.64 -0.21 3.25 16 Total: -1.00 -69.76 399.60 1.99 -67.77 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: 0.07 Total: 30.47 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 6.39 Total: 15.21 kcal Atomic # 7 Polarization: -125.21 SS G_CDS: -6.42 Total: -131.63 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.08 Total: -30.71 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.88 kcal Total: -69.76 1.99 -67.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206820734.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.657 kcal (2) G-P(sol) polarization free energy of solvation -69.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds