Wall clock time and date at job start Tue Mar 31 2020 19:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47194 * 2 1 4 4 H 1.08996 * 109.87532 * 62.35605 * 3 2 1 5 5 C 1.54329 * 109.88172 * 301.17587 * 3 2 1 6 6 C 1.55160 * 102.94092 * 218.39172 * 5 3 2 7 7 C 1.54691 * 101.67748 * 35.33753 * 6 5 3 8 8 N 1.47026 * 109.87875 * 183.37377 * 3 2 1 9 9 C 1.34776 * 125.64562 * 298.31310 * 8 3 2 10 10 O 1.21350 * 120.00189 * 3.98383 * 9 8 3 11 11 C 1.49450 * 119.99982 * 183.97694 * 9 8 3 12 12 O 1.21352 * 120.00004 * 353.51394 * 11 9 8 13 13 N 1.34774 * 120.00065 * 173.51226 * 11 9 8 14 14 C 1.46921 * 120.63106 * 353.92769 * 13 11 9 15 15 C 1.53198 * 108.77466 * 233.58348 * 14 13 11 16 16 C 1.53043 * 109.30990 * 305.36162 * 15 14 13 17 17 C 1.53001 * 109.45597 * 181.38445 * 16 15 14 18 18 N 1.46494 * 109.46974 * 175.00269 * 17 16 15 19 19 C 1.36945 * 120.00211 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99635 * 359.97438 * 19 18 17 21 21 C 1.38813 * 120.00113 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00038 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99842 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47248 * 59.99272 * 23 21 19 25 25 H 1.48498 * 109.46931 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46765 * 299.99430 * 23 21 19 27 27 C 1.53041 * 109.53681 * 61.36705 * 16 15 14 28 28 C 1.46928 * 120.63132 * 173.89826 * 13 11 9 29 29 H 1.09006 * 109.46766 * 305.09536 * 1 2 3 30 30 H 1.08997 * 109.47099 * 65.08824 * 1 2 3 31 31 H 1.08996 * 109.47257 * 185.09820 * 1 2 3 32 32 H 1.09004 * 109.46947 * 239.99817 * 2 1 3 33 33 H 1.08999 * 109.46888 * 119.99911 * 2 1 3 34 34 H 1.08999 * 110.72115 * 336.75395 * 5 3 2 35 35 H 1.08999 * 110.71730 * 100.02913 * 5 3 2 36 36 H 1.09000 * 110.99789 * 153.57673 * 6 5 3 37 37 H 1.08994 * 111.00383 * 277.38899 * 6 5 3 38 38 H 1.08996 * 110.39065 * 204.35864 * 7 6 5 39 39 H 1.09000 * 110.23652 * 82.11153 * 7 6 5 40 40 H 1.09000 * 109.59149 * 113.79767 * 14 13 11 41 41 H 1.09002 * 109.70223 * 353.43893 * 14 13 11 42 42 H 1.09001 * 109.49774 * 185.40922 * 15 14 13 43 43 H 1.08993 * 109.49588 * 65.31478 * 15 14 13 44 44 H 1.08991 * 109.46507 * 301.35390 * 16 15 14 45 45 H 1.08996 * 109.47265 * 55.00424 * 17 16 15 46 46 H 1.09007 * 109.47102 * 295.00035 * 17 16 15 47 47 H 0.97002 * 120.00501 * 359.72435 * 18 17 16 48 48 H 0.97003 * 120.00186 * 180.02562 * 22 21 19 49 49 H 1.09001 * 109.49658 * 58.58347 * 27 16 15 50 50 H 1.08995 * 109.49926 * 178.67771 * 27 16 15 51 51 H 1.08999 * 109.59151 * 246.20336 * 28 13 11 52 52 H 1.09004 * 109.58806 * 6.48499 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.7152 1.9503 0.9080 5 6 1.5067 2.1877 -1.2417 6 6 2.7124 3.0689 -1.6626 7 6 3.9077 2.1493 -1.3182 8 7 3.5080 1.4537 -0.0814 9 6 4.3491 0.9214 0.8273 10 8 3.9074 0.3114 1.7788 11 6 5.8258 1.0823 0.6630 12 8 6.2726 1.5880 -0.3456 13 7 6.6614 0.6658 1.6350 14 6 6.1344 0.1745 2.9154 15 6 6.7990 0.9548 4.0541 16 6 8.3198 0.8504 3.9188 17 6 8.9868 1.5997 5.0741 18 7 10.4369 1.4007 5.0126 19 6 11.2480 1.9802 5.9516 20 1 10.8186 2.5844 6.7371 21 6 12.6221 1.7920 5.8931 22 7 13.1453 1.0562 4.9355 23 14 13.7283 2.5820 7.1743 24 1 13.3554 2.0864 8.5236 25 1 15.1430 2.2298 6.8916 26 1 13.5660 4.0573 7.1264 27 6 8.7590 1.4683 2.5893 28 6 8.1166 0.6939 1.4341 29 1 -0.3633 0.5909 0.8409 30 1 -0.3633 0.4329 -0.9320 31 1 -0.3633 -1.0235 0.0913 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.2489 1.4837 -2.0329 35 1 0.6487 2.8072 -0.9806 36 1 2.6815 3.2893 -2.7296 37 1 2.7482 3.9875 -1.0769 38 1 4.8060 2.7423 -1.1466 39 1 4.0740 1.4308 -2.1207 40 1 6.3591 -0.8869 3.0200 41 1 5.0554 0.3248 2.9506 42 1 6.4893 0.5357 5.0115 43 1 6.4999 2.0015 4.0008 44 1 8.6159 -0.1981 3.9471 45 1 8.6075 1.2179 6.0219 46 1 8.7624 2.6635 4.9949 47 1 10.8222 0.8548 4.3095 48 1 14.1055 0.9244 4.8948 49 1 8.4414 2.5102 2.5499 50 1 9.8443 1.4148 2.5041 51 1 8.5030 -0.3252 1.4178 52 1 8.3456 1.1866 0.4891 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206820736.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:26 Heat of formation + Delta-G solvation = -48.284940 kcal Electronic energy + Delta-G solvation = -30194.001012 eV Core-core repulsion = 26193.975101 eV Total energy + Delta-G solvation = -4000.025910 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.26708 -39.62074 -37.96378 -37.73839 -34.96480 -33.87457 -32.80813 -31.95696 -30.99769 -30.39598 -28.26360 -27.11755 -25.56877 -23.93496 -23.62593 -22.89579 -22.19674 -21.61233 -20.73982 -19.87023 -19.10452 -17.48431 -17.33244 -16.94940 -16.59376 -15.92030 -15.63093 -15.02541 -14.77689 -14.59506 -14.40148 -14.16036 -14.07486 -13.81667 -13.67722 -13.60620 -13.40140 -13.19779 -12.92583 -12.75539 -12.45061 -12.33752 -12.20885 -12.09401 -11.80877 -11.70173 -11.61596 -11.31600 -11.11658 -11.03006 -10.96043 -10.81703 -10.79371 -10.39215 -10.31298 -10.17558 -9.96146 -9.67091 -9.16961 -9.02085 -8.83626 -8.66894 -6.88462 -5.73973 -3.02012 1.28340 2.06483 3.04354 3.21772 3.45916 3.50037 3.51223 3.92221 4.14622 4.26066 4.38009 4.61559 4.70070 4.77080 4.88486 4.97039 5.00878 5.07666 5.11135 5.12894 5.24574 5.26902 5.33181 5.45743 5.46827 5.49310 5.54501 5.59451 5.66201 5.68687 5.69690 5.72486 5.73992 5.83842 5.96209 6.01137 6.03024 6.10175 6.15804 6.23550 6.33206 6.37199 6.51690 6.68291 6.84270 6.91521 6.96288 7.19726 7.52277 7.72217 7.87197 8.45432 9.56291 10.14978 10.49704 11.48970 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027721 B = 0.002082 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.810421 B =13446.046379 C =13856.424325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.137 4.137 3 C 0.135 3.865 4 H 0.081 0.919 5 C -0.127 4.127 6 C -0.138 4.138 7 C 0.095 3.905 8 N -0.587 5.587 9 C 0.525 3.475 10 O -0.510 6.510 11 C 0.506 3.494 12 O -0.526 6.526 13 N -0.571 5.571 14 C 0.064 3.936 15 C -0.125 4.125 16 C -0.096 4.096 17 C 0.158 3.842 18 N -0.732 5.732 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.122 4.122 28 C 0.107 3.893 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.141 0.859 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.063 0.937 50 H 0.090 0.910 51 H 0.073 0.927 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.220 -0.239 -15.107 31.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.175 4.175 3 C 0.032 3.968 4 H 0.099 0.901 5 C -0.165 4.165 6 C -0.176 4.176 7 C -0.027 4.027 8 N -0.321 5.321 9 C 0.309 3.691 10 O -0.388 6.388 11 C 0.289 3.711 12 O -0.404 6.404 13 N -0.304 5.304 14 C -0.057 4.057 15 C -0.164 4.164 16 C -0.115 4.115 17 C 0.031 3.969 18 N -0.376 5.376 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.211 4.211 22 N -0.583 5.583 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.160 4.160 28 C -0.015 4.015 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.121 0.879 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.158 0.842 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.036 0.964 46 H 0.035 0.965 47 H 0.217 0.783 48 H 0.065 0.935 49 H 0.082 0.918 50 H 0.108 0.892 51 H 0.092 0.908 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -27.070 -0.240 -14.934 30.917 hybrid contribution 0.993 0.179 0.579 1.163 sum -26.077 -0.061 -14.355 29.767 Atomic orbital electron populations 1.21730 0.94907 1.02054 1.01869 1.21910 0.96286 0.95816 1.03477 1.21802 0.78625 0.96978 0.99370 0.90127 1.22752 0.98232 0.98702 0.96845 1.22836 0.94051 0.98292 1.02427 1.22643 0.99023 0.95447 0.85555 1.48410 1.06511 1.54856 1.22303 1.19980 0.87430 0.79643 0.82049 1.90443 1.77668 1.40927 1.29743 1.19856 0.87088 0.80027 0.84176 1.90693 1.77635 1.42927 1.29145 1.48058 1.06932 1.60445 1.14932 1.23010 1.03682 0.98112 0.80943 1.21925 0.95608 1.00717 0.98134 1.21350 0.94017 1.00621 0.95543 1.20669 0.85713 0.96297 0.94241 1.42376 0.99951 1.61043 1.34260 1.19194 0.88380 1.24129 1.05247 0.91330 1.24732 0.96742 1.00796 0.98830 1.69642 1.11199 1.43438 1.34055 0.86261 0.79917 0.78905 0.81070 1.21325 1.21710 1.21320 1.21905 1.01784 0.99204 0.93125 1.21898 0.77454 1.01494 1.00615 0.92501 0.92542 0.92410 0.91803 0.90208 0.90148 0.89779 0.89488 0.90460 0.87879 0.90895 0.91364 0.84224 0.90499 0.91842 0.90966 0.96385 0.96466 0.78270 0.93505 0.91814 0.89193 0.90838 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.56 37.16 0.36 -0.47 16 2 C -0.14 -1.05 5.34 -26.73 -0.14 -1.19 16 3 C 0.13 1.04 3.02 -66.95 -0.20 0.84 16 4 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 5 C -0.13 -0.65 5.46 -24.89 -0.14 -0.78 16 6 C -0.14 -0.77 7.07 -24.70 -0.17 -0.94 16 7 C 0.10 0.81 6.09 -2.65 -0.02 0.79 16 8 N -0.59 -5.90 3.07 -163.66 -0.50 -6.40 16 9 C 0.52 6.54 7.61 -11.59 -0.09 6.45 16 10 O -0.51 -6.84 12.05 5.50 0.07 -6.77 16 11 C 0.51 6.99 7.71 -11.59 -0.09 6.90 16 12 O -0.53 -7.87 13.21 5.50 0.07 -7.80 16 13 N -0.57 -7.82 2.97 -173.27 -0.51 -8.34 16 14 C 0.06 0.82 6.05 -3.71 -0.02 0.79 16 15 C -0.13 -1.70 5.36 -26.61 -0.14 -1.84 16 16 C -0.10 -1.57 2.19 -90.58 -0.20 -1.77 16 17 C 0.16 3.23 5.65 -4.04 -0.02 3.21 16 18 N -0.73 -18.65 5.31 -59.91 -0.32 -18.97 16 19 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 22 N -0.93 -28.42 13.06 55.49 0.72 -27.69 16 23 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 C -0.12 -1.95 5.25 -26.61 -0.14 -2.08 16 28 C 0.11 1.50 6.44 -3.71 -0.02 1.47 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.25 7.15 -51.93 -0.37 -0.12 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.79 6.83 -51.93 -0.35 0.44 16 34 H 0.08 0.36 7.49 -51.93 -0.39 -0.03 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.10 1.06 6.12 -51.93 -0.32 0.74 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.14 1.82 4.15 -55.61 -0.23 1.59 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 47 H 0.38 10.15 6.85 -40.82 -0.28 9.87 16 48 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 49 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 50 H 0.09 1.62 7.15 -51.93 -0.37 1.25 16 51 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 52 H 0.09 1.31 7.00 -51.93 -0.36 0.95 16 LS Contribution 397.97 15.07 6.00 6.00 Total: -1.00 -32.08 397.97 -9.78 -41.86 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -8.99 Total: 6.53 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -1.29 Total: 3.93 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.61 Total: -61.40 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.14 Total: -14.57 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.08 -9.78 -41.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206820736.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.430 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds