Wall clock time and date at job start Tue Mar 31 2020 20:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46956 * 2 1 4 4 H 1.09001 * 109.47058 * 54.82181 * 3 2 1 5 5 C 1.50697 * 109.46792 * 174.82351 * 3 2 1 6 6 O 1.21285 * 120.00005 * 113.16347 * 5 3 2 7 7 N 1.34778 * 120.00011 * 292.88397 * 5 3 2 8 8 C 1.46921 * 120.62919 * 176.65211 * 7 5 3 9 9 C 1.53628 * 108.54573 * 126.37061 * 8 7 5 10 10 C 1.53039 * 109.24181 * 54.85188 * 9 8 7 11 11 C 1.52996 * 109.44794 * 178.50053 * 10 9 8 12 12 N 1.46503 * 109.47202 * 295.06417 * 11 10 9 13 13 C 1.36939 * 119.99906 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00036 * 359.97438 * 13 12 11 15 15 C 1.38809 * 119.99983 * 179.97438 * 13 12 11 16 16 N 1.31618 * 119.99918 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00266 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46968 * 89.99948 * 17 15 13 19 19 H 1.48496 * 109.47188 * 209.99857 * 17 15 13 20 20 H 1.48500 * 109.47075 * 330.00152 * 17 15 13 21 21 C 1.53032 * 109.53985 * 298.51295 * 10 9 8 22 22 C 1.46926 * 120.63090 * 356.93143 * 7 5 3 23 23 N 1.46500 * 109.46949 * 294.82135 * 3 2 1 24 24 C 1.46765 * 124.34728 * 119.72469 * 23 3 2 25 25 C 1.54660 * 105.37964 * 162.85171 * 24 23 3 26 26 C 1.54631 * 101.68401 * 25.77091 * 25 24 23 27 27 C 1.34414 * 124.34929 * 300.02510 * 23 3 2 28 28 O 1.21283 * 124.94267 * 0.39000 * 27 23 3 29 29 H 1.09002 * 109.46716 * 60.00269 * 1 2 3 30 30 H 1.09000 * 109.47191 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47377 * 300.00088 * 1 2 3 32 32 H 1.08994 * 109.47348 * 239.99202 * 2 1 3 33 33 H 1.09002 * 109.46716 * 119.99731 * 2 1 3 34 34 H 1.09000 * 109.58728 * 246.20077 * 8 7 5 35 35 H 1.08996 * 109.59082 * 6.62956 * 8 7 5 36 36 H 1.09004 * 109.63297 * 294.86529 * 9 8 7 37 37 H 1.09002 * 109.43625 * 174.72655 * 9 8 7 38 38 H 1.09001 * 109.45632 * 58.53501 * 10 9 8 39 39 H 1.08999 * 109.47738 * 55.06626 * 11 10 9 40 40 H 1.09002 * 109.46961 * 175.06437 * 11 10 9 41 41 H 0.96998 * 120.00115 * 359.97438 * 12 11 10 42 42 H 0.97000 * 119.99949 * 179.97438 * 16 15 13 43 43 H 1.08998 * 109.50315 * 301.41208 * 21 10 9 44 44 H 1.08994 * 109.52880 * 181.32808 * 21 10 9 45 45 H 1.08995 * 109.58484 * 353.37034 * 22 7 5 46 46 H 1.09001 * 109.58699 * 113.65820 * 22 7 5 47 47 H 1.08995 * 110.24815 * 281.98325 * 24 23 3 48 48 H 1.09004 * 110.24151 * 43.98696 * 24 23 3 49 49 H 1.08999 * 111.19658 * 267.59409 * 25 24 23 50 50 H 1.09005 * 110.84967 * 143.79385 * 25 24 23 51 51 H 1.09002 * 110.48653 * 216.30449 * 26 25 24 52 52 H 1.09004 * 110.59990 * 93.71935 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6029 1.9824 0.8400 5 6 3.5415 1.4444 0.1282 6 8 4.2284 1.8291 -0.7944 7 7 4.1209 1.0239 1.2701 8 6 5.5838 0.9507 1.3844 9 6 6.0171 1.7429 2.6273 10 6 5.2642 1.2141 3.8502 11 6 5.7198 1.9748 5.0971 12 7 7.1328 1.6871 5.3556 13 6 7.7631 2.2600 6.4278 14 1 7.2187 2.9243 7.0826 15 6 9.1018 1.9870 6.6731 16 7 9.7652 1.1771 5.8754 17 14 9.9620 2.7690 8.1353 18 1 9.8214 1.8873 9.3219 19 1 11.4020 2.9523 7.8226 20 1 9.3462 4.0892 8.4239 21 6 3.7602 1.4150 3.6516 22 6 3.3014 0.6243 2.4223 23 7 1.6561 2.0962 -1.2536 24 6 0.8066 3.2900 -1.3387 25 6 1.0374 3.8573 -2.7589 26 6 1.4632 2.5905 -3.5367 27 6 2.0318 1.6762 -2.4739 28 8 2.7259 0.7057 -2.6914 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8898 33 1 1.8933 -0.5138 0.8900 34 1 5.8908 -0.0902 1.4859 35 1 6.0420 1.3839 0.4953 36 1 5.7869 2.7991 2.4870 37 1 7.0896 1.6210 2.7794 38 1 5.4754 0.1521 3.9754 39 1 5.5903 3.0452 4.9373 40 1 5.1224 1.6604 5.9529 41 1 7.6217 1.0903 4.7677 42 1 10.7008 0.9866 6.0465 43 1 3.5512 2.4742 3.5018 44 1 3.2257 1.0599 4.5327 45 1 2.2531 0.8420 2.2181 46 1 3.4241 -0.4433 2.6052 47 1 -0.2402 3.0185 -1.2035 48 1 1.1075 4.0212 -0.5883 49 1 1.8331 4.6023 -2.7612 50 1 0.1153 4.2730 -3.1652 51 1 2.2251 2.8352 -4.2768 52 1 0.6011 2.1274 -4.0169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206935625.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:30 Heat of formation + Delta-G solvation = -59.626168 kcal Electronic energy + Delta-G solvation = -30694.620403 eV Core-core repulsion = 26694.102700 eV Total energy + Delta-G solvation = -4000.517703 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.16880 -39.73323 -37.60197 -36.51150 -35.37090 -34.81241 -32.77155 -31.31971 -31.05185 -30.40701 -27.90484 -27.67410 -26.34010 -23.88432 -23.16889 -22.61577 -22.21459 -21.81808 -20.62513 -19.56112 -18.68623 -17.49373 -17.20513 -16.93319 -16.67135 -15.77159 -15.27868 -14.97679 -14.88146 -14.58602 -14.35413 -14.10030 -13.88055 -13.82236 -13.62962 -13.55646 -13.36787 -13.25991 -12.94560 -12.85448 -12.72128 -12.43395 -12.20709 -12.10231 -11.88734 -11.80688 -11.51975 -11.37853 -11.25862 -11.17543 -10.98049 -10.83053 -10.45834 -10.35592 -10.18190 -9.96913 -9.92783 -9.72834 -9.63229 -8.87465 -8.85233 -8.57442 -6.90877 -5.75933 -3.04322 2.38162 2.59226 2.68212 3.10534 3.43724 3.48717 3.50667 4.04179 4.13563 4.30617 4.44833 4.54099 4.56032 4.59339 4.71177 4.78798 4.88806 4.97890 5.02010 5.07318 5.10981 5.17258 5.26240 5.33790 5.35847 5.38592 5.43704 5.49288 5.57269 5.58005 5.63190 5.63915 5.74016 5.82056 5.90852 5.93861 6.00323 6.11283 6.16033 6.24032 6.30202 6.41416 6.51734 6.70629 6.81065 6.91684 6.94153 7.39128 7.70280 8.06278 8.21712 8.43283 9.54274 10.12712 10.47108 11.47036 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023423 B = 0.002259 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.132775 B =12391.343307 C =12658.632337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.145 3.855 4 H 0.110 0.890 5 C 0.503 3.497 6 O -0.521 6.521 7 N -0.607 5.607 8 C 0.112 3.888 9 C -0.122 4.122 10 C -0.094 4.094 11 C 0.159 3.841 12 N -0.732 5.732 13 C -0.239 4.239 14 H 0.069 0.931 15 C -0.015 4.015 16 N -0.934 5.934 17 Si 0.907 3.093 18 H -0.290 1.290 19 H -0.291 1.291 20 H -0.282 1.282 21 C -0.127 4.127 22 C 0.105 3.895 23 N -0.608 5.608 24 C 0.104 3.896 25 C -0.130 4.130 26 C -0.155 4.155 27 C 0.526 3.474 28 O -0.513 6.513 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.017 0.983 40 H 0.018 0.982 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.083 0.917 50 H 0.089 0.911 51 H 0.100 0.900 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.634 1.709 -15.601 30.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C 0.038 3.962 4 H 0.128 0.872 5 C 0.289 3.711 6 O -0.396 6.396 7 N -0.342 5.342 8 C -0.010 4.010 9 C -0.160 4.160 10 C -0.113 4.113 11 C 0.031 3.969 12 N -0.376 5.376 13 C -0.370 4.370 14 H 0.087 0.913 15 C -0.211 4.211 16 N -0.582 5.582 17 Si 0.738 3.262 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.208 1.208 21 C -0.165 4.165 22 C -0.018 4.018 23 N -0.344 5.344 24 C -0.019 4.019 25 C -0.168 4.168 26 C -0.195 4.195 27 C 0.314 3.686 28 O -0.387 6.387 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.035 0.965 40 H 0.036 0.964 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.090 0.910 47 H 0.091 0.909 48 H 0.095 0.905 49 H 0.102 0.898 50 H 0.108 0.892 51 H 0.119 0.881 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -24.821 1.473 -16.029 29.584 hybrid contribution 0.737 0.308 0.896 1.200 sum -24.084 1.782 -15.134 28.500 Atomic orbital electron populations 1.21708 0.94554 1.02126 1.01816 1.21994 0.97033 0.94201 1.04726 1.20849 0.92418 0.95732 0.87161 0.87205 1.20753 0.90379 0.77664 0.82322 1.90715 1.64407 1.46017 1.38420 1.48096 1.07602 1.65691 1.12795 1.21792 0.78604 1.00678 0.99885 1.21983 1.01735 0.99402 0.92901 1.21304 0.93300 1.00878 0.95815 1.20658 0.87174 0.96063 0.92972 1.42381 1.05776 1.56708 1.32782 1.19222 0.93014 1.21551 1.03228 0.91283 1.24738 0.96797 1.00296 0.99221 1.69653 1.09563 1.39869 1.39148 0.86193 0.78960 0.78745 0.82316 1.21750 1.21773 1.20812 1.21923 0.97106 1.00580 0.96925 1.21901 0.94455 0.99534 0.85941 1.47932 1.51281 1.29867 1.05273 1.22138 0.94474 0.86687 0.98559 1.22605 1.03070 0.97201 0.93942 1.22313 1.03037 0.96037 0.98097 1.20714 0.79013 0.84960 0.83945 1.90715 1.36397 1.28084 1.83512 0.92675 0.92157 0.92522 0.89658 0.89846 0.91444 0.89298 0.91954 0.89473 0.90933 0.96526 0.96442 0.78230 0.93509 0.91554 0.90496 0.90143 0.90993 0.90905 0.90457 0.89834 0.89216 0.88129 0.88082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.80 37.16 0.36 -0.57 16 2 C -0.14 -1.28 4.96 -26.73 -0.13 -1.41 16 3 C 0.15 1.46 1.82 -69.08 -0.13 1.33 16 4 H 0.11 0.81 7.10 -51.93 -0.37 0.44 16 5 C 0.50 7.10 6.81 -10.99 -0.07 7.02 16 6 O -0.52 -9.59 13.98 -12.64 -0.18 -9.77 16 7 N -0.61 -7.83 2.97 -172.50 -0.51 -8.34 16 8 C 0.11 1.65 6.47 -3.49 -0.02 1.62 16 9 C -0.12 -1.94 5.26 -26.38 -0.14 -2.08 16 10 C -0.09 -1.44 2.19 -90.58 -0.20 -1.64 16 11 C 0.16 3.12 5.65 -4.04 -0.02 3.09 16 12 N -0.73 -18.40 5.32 -59.91 -0.32 -18.72 16 13 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 14 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 15 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 16 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 17 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 C -0.13 -1.43 5.36 -26.61 -0.14 -1.58 16 22 C 0.10 1.02 4.93 -3.71 -0.02 1.00 16 23 N -0.61 -6.02 2.13 -166.05 -0.35 -6.38 16 24 C 0.10 0.62 7.31 -3.02 -0.02 0.59 16 25 C -0.13 -0.67 7.19 -25.00 -0.18 -0.85 16 26 C -0.15 -1.18 6.86 -26.74 -0.18 -1.36 16 27 C 0.53 6.47 6.66 -10.86 -0.07 6.40 16 28 O -0.51 -8.71 15.12 -12.64 -0.19 -8.90 16 29 H 0.05 0.37 7.76 -51.93 -0.40 -0.03 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 1.04 6.62 -51.93 -0.34 0.70 16 33 H 0.08 0.67 5.92 -51.93 -0.31 0.37 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.09 1.45 7.00 -51.93 -0.36 1.09 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 1.60 7.15 -51.93 -0.37 1.23 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.38 10.10 6.84 -40.82 -0.28 9.82 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.08 0.57 4.99 -51.93 -0.26 0.31 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 49 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 51 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 52 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 399.97 15.07 6.03 6.03 Total: -1.00 -36.82 399.97 -10.04 -46.86 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -9.01 Total: 5.14 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -1.22 Total: 4.20 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: -0.46 Total: -61.08 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.37 Total: -18.67 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.82 -10.04 -46.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206935625.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.766 kcal (2) G-P(sol) polarization free energy of solvation -36.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds