Wall clock time and date at job start Tue Mar 31 2020 20:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46956 * 2 1 4 4 H 1.09001 * 109.47058 * 54.82181 * 3 2 1 5 5 C 1.50697 * 109.46792 * 174.82351 * 3 2 1 6 6 O 1.21285 * 120.00005 * 113.16347 * 5 3 2 7 7 N 1.34778 * 120.00011 * 292.88397 * 5 3 2 8 8 C 1.46921 * 120.62919 * 176.65211 * 7 5 3 9 9 C 1.53628 * 108.54573 * 126.37061 * 8 7 5 10 10 C 1.53039 * 109.24181 * 54.85188 * 9 8 7 11 11 C 1.52996 * 109.44794 * 178.50053 * 10 9 8 12 12 N 1.46503 * 109.47202 * 295.06417 * 11 10 9 13 13 C 1.36939 * 119.99906 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00036 * 359.97438 * 13 12 11 15 15 C 1.38809 * 119.99983 * 179.97438 * 13 12 11 16 16 N 1.31618 * 119.99918 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00266 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46968 * 89.99948 * 17 15 13 19 19 H 1.48496 * 109.47188 * 209.99857 * 17 15 13 20 20 H 1.48500 * 109.47075 * 330.00152 * 17 15 13 21 21 C 1.53032 * 109.53985 * 298.51295 * 10 9 8 22 22 C 1.46926 * 120.63090 * 356.93143 * 7 5 3 23 23 N 1.46500 * 109.46949 * 294.82135 * 3 2 1 24 24 C 1.46765 * 124.34728 * 119.72469 * 23 3 2 25 25 C 1.54660 * 105.37964 * 162.85171 * 24 23 3 26 26 C 1.54631 * 101.68401 * 25.77091 * 25 24 23 27 27 C 1.34414 * 124.34929 * 300.02510 * 23 3 2 28 28 O 1.21283 * 124.94267 * 0.39000 * 27 23 3 29 29 H 1.09002 * 109.46716 * 60.00269 * 1 2 3 30 30 H 1.09000 * 109.47191 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47377 * 300.00088 * 1 2 3 32 32 H 1.08994 * 109.47348 * 239.99202 * 2 1 3 33 33 H 1.09002 * 109.46716 * 119.99731 * 2 1 3 34 34 H 1.09000 * 109.58728 * 246.20077 * 8 7 5 35 35 H 1.08996 * 109.59082 * 6.62956 * 8 7 5 36 36 H 1.09004 * 109.63297 * 294.86529 * 9 8 7 37 37 H 1.09002 * 109.43625 * 174.72655 * 9 8 7 38 38 H 1.09001 * 109.45632 * 58.53501 * 10 9 8 39 39 H 1.08999 * 109.47738 * 55.06626 * 11 10 9 40 40 H 1.09002 * 109.46961 * 175.06437 * 11 10 9 41 41 H 0.96998 * 120.00115 * 359.97438 * 12 11 10 42 42 H 0.97000 * 119.99949 * 179.97438 * 16 15 13 43 43 H 1.08998 * 109.50315 * 301.41208 * 21 10 9 44 44 H 1.08994 * 109.52880 * 181.32808 * 21 10 9 45 45 H 1.08995 * 109.58484 * 353.37034 * 22 7 5 46 46 H 1.09001 * 109.58699 * 113.65820 * 22 7 5 47 47 H 1.08995 * 110.24815 * 281.98325 * 24 23 3 48 48 H 1.09004 * 110.24151 * 43.98696 * 24 23 3 49 49 H 1.08999 * 111.19658 * 267.59409 * 25 24 23 50 50 H 1.09005 * 110.84967 * 143.79385 * 25 24 23 51 51 H 1.09002 * 110.48653 * 216.30449 * 26 25 24 52 52 H 1.09004 * 110.59990 * 93.71935 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6029 1.9824 0.8400 5 6 3.5415 1.4444 0.1282 6 8 4.2284 1.8291 -0.7944 7 7 4.1209 1.0239 1.2701 8 6 5.5838 0.9507 1.3844 9 6 6.0171 1.7429 2.6273 10 6 5.2642 1.2141 3.8502 11 6 5.7198 1.9748 5.0971 12 7 7.1328 1.6871 5.3556 13 6 7.7631 2.2600 6.4278 14 1 7.2187 2.9243 7.0826 15 6 9.1018 1.9870 6.6731 16 7 9.7652 1.1771 5.8754 17 14 9.9620 2.7690 8.1353 18 1 9.8214 1.8873 9.3219 19 1 11.4020 2.9523 7.8226 20 1 9.3462 4.0892 8.4239 21 6 3.7602 1.4150 3.6516 22 6 3.3014 0.6243 2.4223 23 7 1.6561 2.0962 -1.2536 24 6 0.8066 3.2900 -1.3387 25 6 1.0374 3.8573 -2.7589 26 6 1.4632 2.5905 -3.5367 27 6 2.0318 1.6762 -2.4739 28 8 2.7259 0.7057 -2.6914 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8898 33 1 1.8933 -0.5138 0.8900 34 1 5.8908 -0.0902 1.4859 35 1 6.0420 1.3839 0.4953 36 1 5.7869 2.7991 2.4870 37 1 7.0896 1.6210 2.7794 38 1 5.4754 0.1521 3.9754 39 1 5.5903 3.0452 4.9373 40 1 5.1224 1.6604 5.9529 41 1 7.6217 1.0903 4.7677 42 1 10.7008 0.9866 6.0465 43 1 3.5512 2.4742 3.5018 44 1 3.2257 1.0599 4.5327 45 1 2.2531 0.8420 2.2181 46 1 3.4241 -0.4433 2.6052 47 1 -0.2402 3.0185 -1.2035 48 1 1.1075 4.0212 -0.5883 49 1 1.8331 4.6023 -2.7612 50 1 0.1153 4.2730 -3.1652 51 1 2.2251 2.8352 -4.2768 52 1 0.6011 2.1274 -4.0169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206935625.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:28 Heat of formation + Delta-G solvation = -83.403631 kcal Electronic energy + Delta-G solvation = -30695.651471 eV Core-core repulsion = 26694.102700 eV Total energy + Delta-G solvation = -4001.548771 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.04394 -40.70415 -38.83557 -37.39948 -36.62935 -35.94565 -34.39187 -32.25308 -32.14705 -31.88440 -28.82350 -28.39838 -27.63056 -25.54745 -24.30713 -23.60060 -23.00790 -22.70849 -21.80827 -20.65317 -19.66305 -19.14412 -18.28795 -17.90224 -17.43031 -16.81581 -16.67750 -16.26112 -15.82269 -15.70780 -15.44192 -15.35977 -15.24573 -15.01112 -14.62955 -14.54857 -14.35771 -14.16669 -13.89939 -13.87642 -13.66939 -13.44584 -13.27918 -13.13514 -12.92700 -12.91527 -12.74969 -12.40594 -12.24341 -12.18242 -12.13515 -12.00494 -11.90673 -11.82991 -11.66470 -11.43783 -11.39998 -10.94110 -10.88441 -10.61838 -9.69476 -9.65086 -8.99003 -7.95708 -5.24035 1.46026 1.47957 1.51279 1.55100 1.56343 1.91234 2.19830 2.55486 3.31040 3.37967 3.52852 3.64971 3.72571 3.80912 3.85625 3.86576 3.92887 4.06386 4.09264 4.19564 4.28150 4.28829 4.35787 4.40448 4.47798 4.61211 4.67600 4.69542 4.72400 4.72609 4.81697 4.87304 4.89025 4.96085 4.98991 5.05947 5.09151 5.10032 5.14187 5.16727 5.24345 5.27316 5.37801 5.46517 5.51723 5.54066 5.61385 6.19982 6.26943 6.37680 7.08730 7.30039 7.33039 8.10987 8.32843 9.28014 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023423 B = 0.002259 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.132775 B =12391.343307 C =12658.632337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.135 4.135 3 C 0.146 3.854 4 H 0.149 0.851 5 C 0.493 3.507 6 O -0.575 6.575 7 N -0.606 5.606 8 C 0.120 3.880 9 C -0.111 4.111 10 C -0.085 4.085 11 C 0.157 3.843 12 N -0.746 5.746 13 C -0.243 4.243 14 H 0.076 0.924 15 C -0.078 4.078 16 N -0.971 5.971 17 Si 0.973 3.027 18 H -0.285 1.285 19 H -0.297 1.297 20 H -0.269 1.269 21 C -0.117 4.117 22 C 0.103 3.897 23 N -0.608 5.608 24 C 0.097 3.903 25 C -0.121 4.121 26 C -0.152 4.152 27 C 0.507 3.493 28 O -0.576 6.576 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.044 0.956 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.014 0.986 40 H 0.028 0.972 41 H 0.373 0.627 42 H 0.250 0.750 43 H 0.070 0.930 44 H 0.103 0.897 45 H 0.119 0.881 46 H 0.085 0.915 47 H 0.106 0.894 48 H 0.087 0.913 49 H 0.073 0.927 50 H 0.125 0.875 51 H 0.091 0.909 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.790 2.845 -14.244 33.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.174 4.174 3 C 0.039 3.961 4 H 0.167 0.833 5 C 0.281 3.719 6 O -0.453 6.453 7 N -0.339 5.339 8 C -0.003 4.003 9 C -0.149 4.149 10 C -0.104 4.104 11 C 0.031 3.969 12 N -0.389 5.389 13 C -0.375 4.375 14 H 0.094 0.906 15 C -0.271 4.271 16 N -0.622 5.622 17 Si 0.802 3.198 18 H -0.212 1.212 19 H -0.224 1.224 20 H -0.194 1.194 21 C -0.156 4.156 22 C -0.018 4.018 23 N -0.342 5.342 24 C -0.024 4.024 25 C -0.159 4.159 26 C -0.192 4.192 27 C 0.296 3.704 28 O -0.455 6.455 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.032 0.968 40 H 0.046 0.954 41 H 0.205 0.795 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.121 0.879 45 H 0.137 0.863 46 H 0.103 0.897 47 H 0.124 0.876 48 H 0.105 0.895 49 H 0.092 0.908 50 H 0.144 0.856 51 H 0.109 0.891 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -29.074 2.653 -14.625 32.653 hybrid contribution 2.012 -0.025 0.459 2.063 sum -27.062 2.629 -14.166 30.659 Atomic orbital electron populations 1.21676 0.92030 1.02790 1.02975 1.21954 0.99039 0.93050 1.03359 1.21028 0.89223 0.97139 0.88684 0.83331 1.21671 0.92267 0.76394 0.81577 1.90692 1.65984 1.48425 1.40240 1.48198 1.06791 1.65150 1.13776 1.21511 0.80478 1.00312 0.98028 1.21801 0.99896 0.99095 0.94113 1.21217 0.96333 0.99692 0.93115 1.20853 0.84439 0.96411 0.95206 1.42631 1.07980 1.56317 1.31970 1.19649 0.93394 1.20874 1.03617 0.90629 1.25584 0.97763 1.01480 1.02227 1.69819 1.09497 1.41754 1.41141 0.85136 0.77255 0.78349 0.79013 1.21213 1.22401 1.19406 1.21885 0.93601 1.01371 0.98732 1.22184 0.95801 1.00044 0.83806 1.48158 1.50866 1.30615 1.04541 1.22508 0.95415 0.85345 0.99119 1.22657 1.04348 0.95594 0.93269 1.22365 1.03350 0.96486 0.96993 1.21593 0.78303 0.84679 0.85797 1.90670 1.39253 1.30875 1.84677 0.92967 0.91850 0.89787 0.93665 0.88679 0.91061 0.91784 0.92847 0.92846 0.91369 0.96818 0.95449 0.79454 0.94075 0.91133 0.87902 0.86259 0.89703 0.87603 0.89483 0.90796 0.85646 0.89084 0.85805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.80 71.98 0.71 -0.58 16 2 C -0.14 -2.18 4.96 30.60 0.15 -2.03 16 3 C 0.15 2.61 1.82 44.25 0.08 2.69 16 4 H 0.15 1.46 7.10 -2.39 -0.02 1.45 16 5 C 0.49 13.83 6.81 87.66 0.60 14.43 16 6 O -0.57 -22.29 13.98 14.35 0.20 -22.09 16 7 N -0.61 -15.17 2.97 -818.06 -2.43 -17.59 16 8 C 0.12 3.67 6.47 86.51 0.56 4.23 16 9 C -0.11 -3.65 5.26 30.82 0.16 -3.48 16 10 C -0.08 -2.52 2.19 -10.77 -0.02 -2.54 16 11 C 0.16 6.04 5.65 86.38 0.49 6.53 16 12 N -0.75 -38.00 5.32 -343.45 -1.83 -39.83 16 13 C -0.24 -13.71 9.99 84.03 0.84 -12.87 16 14 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 15 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 16 N -0.97 -60.46 13.06 21.65 0.28 -60.18 16 17 Si 0.97 46.61 29.55 68.60 2.03 48.64 16 18 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 19 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 21 C -0.12 -2.27 5.36 30.67 0.16 -2.10 16 22 C 0.10 1.67 4.93 86.37 0.43 2.09 16 23 N -0.61 -11.05 2.13 -797.84 -1.70 -12.75 16 24 C 0.10 0.80 7.31 86.89 0.64 1.44 16 25 C -0.12 -0.91 7.19 31.72 0.23 -0.69 16 26 C -0.15 -2.17 6.86 30.59 0.21 -1.97 16 27 C 0.51 12.63 6.66 87.90 0.59 13.21 16 28 O -0.58 -20.90 15.12 14.35 0.22 -20.68 16 29 H 0.05 0.53 7.76 -2.39 -0.02 0.51 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.04 1.13 6.62 -2.39 -0.02 1.11 16 33 H 0.09 1.25 5.92 -2.39 -0.01 1.24 16 34 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.06 2.28 7.00 -2.39 -0.02 2.26 16 36 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.05 2.11 7.15 -2.39 -0.02 2.09 16 38 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.37 20.33 6.84 -92.71 -0.63 19.70 16 42 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 43 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.12 1.06 4.99 -2.39 -0.01 1.05 16 46 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 48 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.13 0.10 8.14 -2.38 -0.02 0.08 16 51 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 52 H 0.12 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -86.80 399.97 3.32 -83.48 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: 0.27 Total: 26.73 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 6.28 Total: 14.26 kcal Atomic # 7 Polarization: -124.67 SS G_CDS: -5.67 Total: -130.34 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: 0.42 Total: -42.77 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -86.80 3.32 -83.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206935625.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.072 kcal (2) G-P(sol) polarization free energy of solvation -86.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds