Wall clock time and date at job start Tue Mar 31 2020 20:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99466 * 2 1 4 4 H 1.08991 * 109.47708 * 359.97438 * 3 2 1 5 5 C 1.53007 * 109.47048 * 119.99916 * 3 2 1 6 6 C 1.52999 * 109.46955 * 294.99691 * 5 3 2 7 7 C 1.53006 * 109.46813 * 239.99463 * 3 2 1 8 8 C 1.50697 * 109.46873 * 65.00446 * 7 3 2 9 9 O 1.21281 * 120.00424 * 359.97438 * 8 7 3 10 10 N 1.34772 * 119.99893 * 179.97438 * 8 7 3 11 11 C 1.46501 * 120.00171 * 179.97438 * 10 8 7 12 12 H 1.08999 * 110.64418 * 31.84956 * 11 10 8 13 13 C 1.54933 * 110.87686 * 268.58965 * 11 10 8 14 14 N 1.48813 * 103.35205 * 204.25838 * 13 11 10 15 15 C 1.46897 * 111.18681 * 159.50572 * 14 13 11 16 16 C 1.50694 * 109.47194 * 52.66331 * 15 14 13 17 17 O 1.21297 * 120.00284 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00402 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00292 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00201 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99684 * 180.02562 * 19 18 16 22 22 N 1.31401 * 120.00308 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99566 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47005 * 90.00386 * 23 21 19 25 25 H 1.48500 * 109.47117 * 209.99708 * 23 21 19 26 26 H 1.48502 * 109.47434 * 330.00357 * 23 21 19 27 27 C 1.47905 * 105.67450 * 38.97719 * 14 13 11 28 28 C 1.53991 * 107.22505 * 334.90354 * 27 14 13 29 29 H 1.09005 * 110.30467 * 120.04331 * 28 27 14 30 30 C 1.53001 * 110.30958 * 242.11113 * 28 27 14 31 31 H 1.08004 * 119.99935 * 0.02562 * 1 2 3 32 32 H 1.07994 * 119.99988 * 179.97438 * 1 2 3 33 33 H 1.07995 * 120.00130 * 179.97438 * 2 1 3 34 34 H 1.09000 * 109.47139 * 54.99639 * 5 3 2 35 35 H 1.08998 * 109.46979 * 174.99542 * 5 3 2 36 36 H 1.08998 * 109.47399 * 60.00108 * 6 5 3 37 37 H 1.09001 * 109.46975 * 180.02562 * 6 5 3 38 38 H 1.09000 * 109.47154 * 299.99939 * 6 5 3 39 39 H 1.08996 * 109.47019 * 305.00091 * 7 3 2 40 40 H 1.09001 * 109.46982 * 185.00461 * 7 3 2 41 41 H 0.97002 * 120.00268 * 0.02562 * 10 8 7 42 42 H 1.08998 * 110.66828 * 322.59015 * 13 11 10 43 43 H 1.09009 * 110.66924 * 85.55172 * 13 11 10 44 44 H 1.09000 * 109.47143 * 172.66998 * 15 14 13 45 45 H 1.09011 * 109.46966 * 292.66611 * 15 14 13 46 46 H 0.97004 * 119.99442 * 0.02562 * 18 16 15 47 47 H 0.97010 * 120.00236 * 179.97438 * 22 21 19 48 48 H 1.09002 * 109.91668 * 215.45268 * 27 14 13 49 49 H 1.09002 * 109.91761 * 94.35443 * 27 14 13 50 50 H 1.09001 * 109.47038 * 58.54864 * 30 28 27 51 51 H 1.09003 * 109.46771 * 178.54801 * 30 28 27 52 52 H 1.09003 * 109.47058 * 298.54719 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9430 1.3863 1.2493 6 6 2.0563 1.4308 2.4953 7 6 2.9431 1.3862 -1.2492 8 6 2.0698 1.4300 -2.4766 9 8 0.8627 1.3990 -2.3634 10 7 2.6302 1.5037 -3.7001 11 6 1.7812 1.5457 -4.8933 12 1 0.8412 2.0538 -4.6784 13 6 1.5212 0.1182 -5.4364 14 7 1.2135 0.3483 -6.8741 15 6 1.4108 -0.8759 -7.6618 16 6 0.6383 -2.0072 -7.0338 17 8 -0.0122 -1.8130 -6.0286 18 7 0.6703 -3.2349 -7.5890 19 6 -0.0329 -4.2640 -7.0180 20 1 -0.6128 -4.0909 -6.1234 21 6 0.0005 -5.5298 -7.5902 22 7 0.7064 -5.7406 -8.6783 23 14 -0.9581 -6.9318 -6.8125 24 1 -2.3249 -6.9779 -7.3915 25 1 -0.2630 -8.2161 -7.0820 26 1 -1.0488 -6.7161 -5.3461 27 6 2.1369 1.4165 -7.3144 28 6 2.5187 2.2325 -6.0656 29 1 3.5966 2.1984 -5.9064 30 6 2.0504 3.6815 -6.2144 31 1 -0.5400 0.9354 -0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 1.8500 -0.9353 0.0004 34 1 3.5905 0.5106 1.2953 35 1 3.5539 2.2880 1.2056 36 1 1.4454 0.5292 2.5390 37 1 2.6829 1.4891 3.3853 38 1 1.4088 2.3065 2.4494 39 1 3.5906 0.5106 -1.2950 40 1 3.5540 2.2879 -1.2056 41 1 3.5956 1.5281 -3.7907 42 1 2.4114 -0.5018 -5.3307 43 1 0.6729 -0.3389 -4.9266 44 1 1.0556 -0.7142 -8.6795 45 1 2.4712 -1.1275 -7.6827 46 1 1.1908 -3.3903 -8.3927 47 1 0.7301 -6.6244 -9.0776 48 1 1.6409 2.0599 -8.0411 49 1 3.0301 0.9759 -7.7575 50 1 0.9705 3.7010 -6.3616 51 1 2.3045 4.2397 -5.3133 52 1 2.5426 4.1359 -7.0743 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208392685.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:53 Heat of formation + Delta-G solvation = -59.649315 kcal Electronic energy + Delta-G solvation = -29893.035040 eV Core-core repulsion = 25892.516334 eV Total energy + Delta-G solvation = -4000.518706 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.19573 -39.05185 -37.71968 -36.67503 -34.41862 -33.83000 -32.54051 -31.78296 -31.24610 -30.63165 -28.67277 -27.21368 -25.41027 -24.79044 -23.65190 -21.78725 -21.28100 -20.56983 -20.07196 -19.51586 -19.18934 -17.85360 -16.98623 -16.50338 -15.97019 -15.59504 -15.02335 -14.95825 -14.76101 -14.50659 -14.26723 -14.23204 -13.89099 -13.84680 -13.49834 -13.45344 -13.19095 -13.07822 -12.74273 -12.32871 -12.30781 -12.00058 -11.88816 -11.68482 -11.52751 -11.44648 -11.35246 -11.24341 -11.18431 -11.04240 -10.96261 -10.79352 -10.56466 -10.55682 -10.36371 -10.20604 -9.79429 -9.48314 -9.06206 -8.90379 -8.34468 -7.99760 -7.87343 -6.40954 -3.81460 2.52105 2.76590 3.15058 3.18800 3.27328 3.33599 3.90915 4.10615 4.33262 4.48152 4.62177 4.64332 4.73617 4.77117 4.81165 5.06112 5.09098 5.09912 5.25932 5.26159 5.34980 5.37762 5.39134 5.44593 5.51071 5.53810 5.56861 5.70612 5.72751 5.73528 5.78509 5.85855 5.88183 5.94842 5.98765 6.00035 6.08287 6.16074 6.19270 6.23934 6.27976 6.53062 6.78233 6.83157 7.00452 7.22359 7.31482 7.55029 7.56629 8.07293 8.34389 8.62964 9.19319 9.54766 10.07071 10.76821 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009031 B = 0.003012 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3099.659795 B = 9293.008539 C =11904.318222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.159 4.159 3 C -0.042 4.042 4 H 0.080 0.920 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.134 4.134 8 C 0.510 3.490 9 O -0.521 6.521 10 N -0.726 5.726 11 C 0.142 3.858 12 H 0.103 0.897 13 C 0.033 3.967 14 N -0.494 5.494 15 C 0.038 3.962 16 C 0.441 3.559 17 O -0.576 6.576 18 N -0.563 5.563 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C 0.037 3.963 28 C -0.108 4.108 29 H 0.075 0.925 30 C -0.139 4.139 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.395 0.605 42 H 0.035 0.965 43 H 0.122 0.878 44 H 0.091 0.909 45 H 0.048 0.952 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.081 0.919 49 H 0.043 0.957 50 H 0.063 0.937 51 H 0.053 0.947 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.461 17.490 11.501 23.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.177 4.177 3 C -0.061 4.061 4 H 0.098 0.902 5 C -0.153 4.153 6 C -0.209 4.209 7 C -0.175 4.175 8 C 0.296 3.704 9 O -0.396 6.396 10 N -0.378 5.378 11 C 0.036 3.964 12 H 0.121 0.879 13 C -0.095 4.095 14 N -0.218 5.218 15 C -0.094 4.094 16 C 0.226 3.774 17 O -0.460 6.460 18 N -0.199 5.199 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.091 4.091 28 C -0.128 4.128 29 H 0.094 0.906 30 C -0.196 4.196 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.229 0.771 42 H 0.053 0.947 43 H 0.139 0.861 44 H 0.109 0.891 45 H 0.066 0.934 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.099 0.901 49 H 0.062 0.938 50 H 0.082 0.918 51 H 0.072 0.928 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.605 17.559 12.075 22.981 hybrid contribution 1.382 -1.305 -0.503 1.966 sum 9.987 16.253 11.572 22.312 Atomic orbital electron populations 1.23717 0.95932 1.01418 0.98346 1.22595 0.96045 0.96935 1.02082 1.20136 0.96467 0.97236 0.92287 0.90161 1.21539 0.97860 1.01776 0.94144 1.21758 0.99827 1.02249 0.97023 1.21723 0.98746 1.04046 0.92942 1.20651 0.89366 0.75963 0.84460 1.90750 1.14675 1.47768 1.86419 1.46018 1.09762 1.76124 1.05894 1.22058 0.94387 0.96837 0.83075 0.87877 1.23845 1.02152 0.94646 0.88844 1.64606 1.48368 1.06010 1.02809 1.22106 0.98482 0.90280 0.98511 1.19734 0.86731 0.83725 0.87200 1.90478 1.46101 1.82792 1.26673 1.41847 1.44208 1.07372 1.26507 1.19706 1.25336 0.87326 1.10344 0.87906 1.25254 0.97714 0.98781 0.96188 1.69611 1.40838 1.23839 1.20103 0.85867 0.79230 0.79717 0.79549 1.20353 1.20950 1.19405 1.23020 0.95060 0.94357 0.96688 1.22245 0.99649 0.95927 0.94981 0.90648 1.21806 1.02014 0.94504 1.01318 0.88724 0.89039 0.88077 0.91847 0.92009 0.92258 0.93024 0.92854 0.88937 0.89087 0.77125 0.94653 0.86051 0.89085 0.93444 0.77499 0.91895 0.90082 0.93827 0.91823 0.92805 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 13.22 29.01 0.38 -1.69 16 2 C -0.16 -1.90 6.76 -36.03 -0.24 -2.14 16 3 C -0.04 -0.42 1.82 -91.77 -0.17 -0.58 16 4 H 0.08 0.89 7.60 -51.93 -0.39 0.50 16 5 C -0.12 -0.88 5.39 -26.73 -0.14 -1.02 16 6 C -0.15 -1.16 9.73 37.16 0.36 -0.80 16 7 C -0.13 -1.20 5.16 -27.88 -0.14 -1.34 16 8 C 0.51 6.52 7.58 -10.99 -0.08 6.44 16 9 O -0.52 -8.90 13.81 5.56 0.08 -8.82 16 10 N -0.73 -8.24 5.18 -52.01 -0.27 -8.51 16 11 C 0.14 1.95 2.97 -66.07 -0.20 1.76 16 12 H 0.10 1.66 7.27 -51.93 -0.38 1.28 16 13 C 0.03 0.60 5.00 -1.74 -0.01 0.59 16 14 N -0.49 -8.53 5.27 -231.64 -1.22 -9.75 16 15 C 0.04 0.70 5.52 -4.98 -0.03 0.67 16 16 C 0.44 10.62 7.50 -10.99 -0.08 10.54 16 17 O -0.58 -15.82 13.11 5.54 0.07 -15.75 16 18 N -0.56 -14.49 5.29 -10.96 -0.06 -14.55 16 19 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 20 H 0.10 3.06 7.16 -52.48 -0.38 2.69 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16 23 Si 0.93 21.38 29.55 -169.99 -5.02 16.36 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 27 C 0.04 0.47 6.35 -2.75 -0.02 0.46 16 28 C -0.11 -1.17 3.32 -89.26 -0.30 -1.47 16 29 H 0.08 0.68 7.75 -51.93 -0.40 0.28 16 30 C -0.14 -1.30 8.89 37.16 0.33 -0.97 16 31 H 0.09 1.26 7.83 -52.48 -0.41 0.85 16 32 H 0.09 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.10 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.50 7.38 -51.93 -0.38 0.12 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.40 3.22 8.39 -40.82 -0.34 2.88 16 42 H 0.04 0.64 8.02 -51.93 -0.42 0.22 16 43 H 0.12 2.77 6.01 -51.92 -0.31 2.46 16 44 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 45 H 0.05 0.79 7.81 -51.92 -0.41 0.39 16 46 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 47 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 48 H 0.08 0.96 7.68 -51.93 -0.40 0.56 16 49 H 0.04 0.51 7.57 -51.93 -0.39 0.12 16 50 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 51 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 52 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 415.17 15.07 6.26 6.26 Total: -1.00 -33.30 415.17 -9.16 -42.46 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -9.14 Total: 13.96 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -0.58 Total: 2.39 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.82 Total: -56.86 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: 0.15 Total: -24.57 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.30 -9.16 -42.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208392685.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.187 kcal (2) G-P(sol) polarization free energy of solvation -33.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds