Wall clock time and date at job start Tue Mar 31 2020 20:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99466 * 2 1 4 4 H 1.08991 * 109.47708 * 359.97438 * 3 2 1 5 5 C 1.53007 * 109.47048 * 119.99916 * 3 2 1 6 6 C 1.52999 * 109.46955 * 294.99691 * 5 3 2 7 7 C 1.53006 * 109.46813 * 239.99463 * 3 2 1 8 8 C 1.50697 * 109.46873 * 65.00446 * 7 3 2 9 9 O 1.21281 * 120.00424 * 359.97438 * 8 7 3 10 10 N 1.34772 * 119.99893 * 179.97438 * 8 7 3 11 11 C 1.46501 * 120.00171 * 179.97438 * 10 8 7 12 12 H 1.08999 * 110.64418 * 31.84956 * 11 10 8 13 13 C 1.54933 * 110.87686 * 268.58965 * 11 10 8 14 14 N 1.48813 * 103.35205 * 204.25838 * 13 11 10 15 15 C 1.46897 * 111.18681 * 159.50572 * 14 13 11 16 16 C 1.50694 * 109.47194 * 52.66331 * 15 14 13 17 17 O 1.21297 * 120.00284 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00402 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00292 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00201 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99684 * 180.02562 * 19 18 16 22 22 N 1.31401 * 120.00308 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99566 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47005 * 90.00386 * 23 21 19 25 25 H 1.48500 * 109.47117 * 209.99708 * 23 21 19 26 26 H 1.48502 * 109.47434 * 330.00357 * 23 21 19 27 27 C 1.47905 * 105.67450 * 38.97719 * 14 13 11 28 28 C 1.53991 * 107.22505 * 334.90354 * 27 14 13 29 29 H 1.09005 * 110.30467 * 120.04331 * 28 27 14 30 30 C 1.53001 * 110.30958 * 242.11113 * 28 27 14 31 31 H 1.08004 * 119.99935 * 0.02562 * 1 2 3 32 32 H 1.07994 * 119.99988 * 179.97438 * 1 2 3 33 33 H 1.07995 * 120.00130 * 179.97438 * 2 1 3 34 34 H 1.09000 * 109.47139 * 54.99639 * 5 3 2 35 35 H 1.08998 * 109.46979 * 174.99542 * 5 3 2 36 36 H 1.08998 * 109.47399 * 60.00108 * 6 5 3 37 37 H 1.09001 * 109.46975 * 180.02562 * 6 5 3 38 38 H 1.09000 * 109.47154 * 299.99939 * 6 5 3 39 39 H 1.08996 * 109.47019 * 305.00091 * 7 3 2 40 40 H 1.09001 * 109.46982 * 185.00461 * 7 3 2 41 41 H 0.97002 * 120.00268 * 0.02562 * 10 8 7 42 42 H 1.08998 * 110.66828 * 322.59015 * 13 11 10 43 43 H 1.09009 * 110.66924 * 85.55172 * 13 11 10 44 44 H 1.09000 * 109.47143 * 172.66998 * 15 14 13 45 45 H 1.09011 * 109.46966 * 292.66611 * 15 14 13 46 46 H 0.97004 * 119.99442 * 0.02562 * 18 16 15 47 47 H 0.97010 * 120.00236 * 179.97438 * 22 21 19 48 48 H 1.09002 * 109.91668 * 215.45268 * 27 14 13 49 49 H 1.09002 * 109.91761 * 94.35443 * 27 14 13 50 50 H 1.09001 * 109.47038 * 58.54864 * 30 28 27 51 51 H 1.09003 * 109.46771 * 178.54801 * 30 28 27 52 52 H 1.09003 * 109.47058 * 298.54719 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9430 1.3863 1.2493 6 6 2.0563 1.4308 2.4953 7 6 2.9431 1.3862 -1.2492 8 6 2.0698 1.4300 -2.4766 9 8 0.8627 1.3990 -2.3634 10 7 2.6302 1.5037 -3.7001 11 6 1.7812 1.5457 -4.8933 12 1 0.8412 2.0538 -4.6784 13 6 1.5212 0.1182 -5.4364 14 7 1.2135 0.3483 -6.8741 15 6 1.4108 -0.8759 -7.6618 16 6 0.6383 -2.0072 -7.0338 17 8 -0.0122 -1.8130 -6.0286 18 7 0.6703 -3.2349 -7.5890 19 6 -0.0329 -4.2640 -7.0180 20 1 -0.6128 -4.0909 -6.1234 21 6 0.0005 -5.5298 -7.5902 22 7 0.7064 -5.7406 -8.6783 23 14 -0.9581 -6.9318 -6.8125 24 1 -2.3249 -6.9779 -7.3915 25 1 -0.2630 -8.2161 -7.0820 26 1 -1.0488 -6.7161 -5.3461 27 6 2.1369 1.4165 -7.3144 28 6 2.5187 2.2325 -6.0656 29 1 3.5966 2.1984 -5.9064 30 6 2.0504 3.6815 -6.2144 31 1 -0.5400 0.9354 -0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 1.8500 -0.9353 0.0004 34 1 3.5905 0.5106 1.2953 35 1 3.5539 2.2880 1.2056 36 1 1.4454 0.5292 2.5390 37 1 2.6829 1.4891 3.3853 38 1 1.4088 2.3065 2.4494 39 1 3.5906 0.5106 -1.2950 40 1 3.5540 2.2879 -1.2056 41 1 3.5956 1.5281 -3.7907 42 1 2.4114 -0.5018 -5.3307 43 1 0.6729 -0.3389 -4.9266 44 1 1.0556 -0.7142 -8.6795 45 1 2.4712 -1.1275 -7.6827 46 1 1.1908 -3.3903 -8.3927 47 1 0.7301 -6.6244 -9.0776 48 1 1.6409 2.0599 -8.0411 49 1 3.0301 0.9759 -7.7575 50 1 0.9705 3.7010 -6.3616 51 1 2.3045 4.2397 -5.3133 52 1 2.5426 4.1359 -7.0743 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208392685.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:51 Heat of formation + Delta-G solvation = -84.262237 kcal Electronic energy + Delta-G solvation = -29894.102337 eV Core-core repulsion = 25892.516334 eV Total energy + Delta-G solvation = -4001.586003 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.32906 -40.45671 -39.26665 -37.58553 -36.10688 -35.38284 -33.66140 -33.29591 -32.62228 -31.47931 -29.94512 -28.53628 -26.81656 -25.99813 -24.88163 -22.67752 -22.46291 -21.63084 -21.12464 -20.98659 -20.40928 -19.90222 -18.08159 -17.66072 -17.57685 -16.65638 -16.53584 -16.32643 -16.09214 -15.78673 -15.69186 -15.43374 -15.10151 -14.83465 -14.69470 -14.53280 -14.40025 -14.16530 -13.92876 -13.66604 -13.54641 -13.15942 -13.02310 -12.99664 -12.91562 -12.82863 -12.46013 -12.45649 -12.20652 -12.16525 -12.10084 -12.04232 -11.84616 -11.68845 -11.65061 -11.50442 -11.36932 -10.84936 -10.27163 -10.07391 -10.03425 -9.91339 -9.32848 -8.50250 -5.98756 1.34188 1.37998 1.50733 1.50947 1.76469 2.00617 2.17955 2.26470 2.89409 3.16357 3.33424 3.57485 3.70090 3.83440 3.87456 3.90397 3.96334 4.20420 4.26016 4.35308 4.36473 4.39782 4.45675 4.46960 4.52404 4.58616 4.61056 4.67541 4.69788 4.80381 4.92198 4.97189 5.00198 5.05970 5.07181 5.07702 5.14440 5.18658 5.24257 5.37634 5.38722 5.40619 5.46933 5.54755 5.82236 5.83193 5.94784 6.01184 6.11308 6.57538 6.65191 7.09898 7.40341 7.51695 8.09165 8.67213 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009031 B = 0.003012 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3099.659795 B = 9293.008539 C =11904.318222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.149 4.149 3 C -0.042 4.042 4 H 0.063 0.937 5 C -0.108 4.108 6 C -0.154 4.154 7 C -0.125 4.125 8 C 0.499 3.501 9 O -0.573 6.573 10 N -0.713 5.713 11 C 0.152 3.848 12 H 0.073 0.927 13 C 0.040 3.960 14 N -0.516 5.516 15 C 0.051 3.949 16 C 0.435 3.565 17 O -0.616 6.616 18 N -0.571 5.571 19 C -0.333 4.333 20 H 0.074 0.926 21 C -0.011 4.011 22 N -0.918 5.918 23 Si 0.991 3.009 24 H -0.271 1.271 25 H -0.267 1.267 26 H -0.276 1.276 27 C 0.036 3.964 28 C -0.094 4.094 29 H 0.108 0.892 30 C -0.135 4.135 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.043 0.957 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.111 0.889 40 H 0.131 0.869 41 H 0.415 0.585 42 H 0.030 0.970 43 H 0.060 0.940 44 H 0.113 0.887 45 H 0.073 0.927 46 H 0.397 0.603 47 H 0.279 0.721 48 H 0.094 0.906 49 H 0.065 0.935 50 H 0.045 0.955 51 H 0.061 0.939 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.817 18.807 10.972 25.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.167 4.167 3 C -0.061 4.061 4 H 0.082 0.918 5 C -0.146 4.146 6 C -0.211 4.211 7 C -0.165 4.165 8 C 0.288 3.712 9 O -0.452 6.452 10 N -0.366 5.366 11 C 0.045 3.955 12 H 0.091 0.909 13 C -0.089 4.089 14 N -0.241 5.241 15 C -0.081 4.081 16 C 0.222 3.778 17 O -0.503 6.503 18 N -0.209 5.209 19 C -0.463 4.463 20 H 0.092 0.908 21 C -0.210 4.210 22 N -0.559 5.559 23 Si 0.814 3.186 24 H -0.196 1.196 25 H -0.191 1.191 26 H -0.201 1.201 27 C -0.092 4.092 28 C -0.114 4.114 29 H 0.126 0.874 30 C -0.192 4.192 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.123 0.877 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.129 0.871 40 H 0.148 0.852 41 H 0.253 0.747 42 H 0.048 0.952 43 H 0.078 0.922 44 H 0.131 0.869 45 H 0.091 0.909 46 H 0.231 0.769 47 H 0.088 0.912 48 H 0.112 0.888 49 H 0.083 0.917 50 H 0.064 0.936 51 H 0.080 0.920 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.023 18.893 11.514 25.181 hybrid contribution 0.314 -1.695 -0.342 1.757 sum 12.336 17.199 11.172 23.933 Atomic orbital electron populations 1.23670 0.96809 1.00660 1.01113 1.22902 0.95753 0.98469 0.99618 1.20161 0.96644 0.95044 0.94275 0.91826 1.21511 0.97435 1.03332 0.92282 1.21778 0.99974 1.01359 0.97990 1.21772 0.98074 1.06774 0.89859 1.21503 0.89228 0.74676 0.85837 1.90749 1.17210 1.50042 1.87167 1.45889 1.10604 1.75226 1.04850 1.21730 0.94542 0.94163 0.85051 0.90912 1.23512 0.99151 0.96801 0.89429 1.64524 1.50928 1.06402 1.02290 1.22006 0.98715 0.88552 0.98807 1.20844 0.86028 0.84479 0.86434 1.90493 1.47707 1.83592 1.28481 1.41902 1.44476 1.07694 1.26801 1.19607 1.27002 0.89090 1.10577 0.90780 1.26001 0.98199 1.00363 0.96486 1.69660 1.41008 1.24775 1.20476 0.84971 0.78249 0.77163 0.78207 1.19617 1.19118 1.20084 1.23178 0.95065 0.93121 0.97812 1.22231 1.00990 0.96044 0.92093 0.87400 1.21778 1.01087 0.93538 1.02800 0.89616 0.89917 0.87699 0.90909 0.89698 0.93762 0.91552 0.93242 0.87056 0.85155 0.74722 0.95177 0.92208 0.86929 0.90946 0.76924 0.91195 0.88793 0.91701 0.93619 0.91974 0.90131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.39 13.22 67.78 0.90 -4.50 16 2 C -0.15 -3.71 6.76 25.64 0.17 -3.54 16 3 C -0.04 -0.79 1.82 -11.54 -0.02 -0.82 16 4 H 0.06 1.43 7.60 -2.39 -0.02 1.41 16 5 C -0.11 -1.38 5.39 30.60 0.16 -1.21 16 6 C -0.15 -2.20 9.73 71.98 0.70 -1.50 16 7 C -0.13 -1.94 5.16 29.85 0.15 -1.78 16 8 C 0.50 12.61 7.58 87.66 0.66 13.27 16 9 O -0.57 -20.70 13.81 -3.03 -0.04 -20.74 16 10 N -0.71 -15.19 5.18 -436.85 -2.26 -17.45 16 11 C 0.15 4.14 2.97 46.19 0.14 4.28 16 12 H 0.07 2.46 7.27 -2.39 -0.02 2.45 16 13 C 0.04 1.48 5.00 86.59 0.43 1.91 16 14 N -0.52 -17.67 5.27 -886.78 -4.67 -22.34 16 15 C 0.05 1.82 5.52 85.56 0.47 2.30 16 16 C 0.43 21.68 7.50 87.65 0.66 22.34 16 17 O -0.62 -36.05 13.11 -3.08 -0.04 -36.09 16 18 N -0.57 -30.30 5.29 -306.98 -1.62 -31.92 16 19 C -0.33 -19.56 9.68 84.04 0.81 -18.74 16 20 H 0.07 4.69 7.16 -2.91 -0.02 4.67 16 21 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 22 N -0.92 -50.23 13.05 21.66 0.28 -49.94 16 23 Si 0.99 44.16 29.55 68.60 2.03 46.19 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 27 C 0.04 0.80 6.35 86.44 0.55 1.35 16 28 C -0.09 -1.75 3.32 -9.92 -0.03 -1.79 16 29 H 0.11 1.38 7.75 -2.38 -0.02 1.36 16 30 C -0.13 -2.11 8.89 71.98 0.64 -1.47 16 31 H 0.09 2.58 7.83 -2.91 -0.02 2.56 16 32 H 0.08 2.44 8.06 -2.91 -0.02 2.42 16 33 H 0.11 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.04 0.75 7.38 -2.39 -0.02 0.74 16 37 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.42 5.40 8.39 -92.71 -0.78 4.62 16 42 H 0.03 1.10 8.02 -2.39 -0.02 1.08 16 43 H 0.06 2.97 6.01 -2.38 -0.01 2.95 16 44 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 45 H 0.07 2.26 7.81 -2.38 -0.02 2.25 16 46 H 0.40 19.79 7.90 -92.71 -0.73 19.05 16 47 H 0.28 14.20 8.31 -92.70 -0.77 13.43 16 48 H 0.09 1.90 7.68 -2.39 -0.02 1.89 16 49 H 0.06 1.23 7.57 -2.39 -0.02 1.21 16 50 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 52 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -79.30 415.17 -0.06 -79.37 By element: Atomic # 1 Polarization: 43.53 SS G_CDS: -0.60 Total: 42.93 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 6.87 Total: 10.00 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -8.27 Total: -121.65 kcal Atomic # 8 Polarization: -56.75 SS G_CDS: -0.08 Total: -56.83 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -79.30 -0.06 -79.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208392685.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.896 kcal (2) G-P(sol) polarization free energy of solvation -79.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds