Wall clock time and date at job start Tue Mar 31 2020 20:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 119.99610 * 2 1 4 4 H 1.08997 * 109.47346 * 0.02562 * 3 2 1 5 5 C 1.53006 * 109.47107 * 239.99625 * 3 2 1 6 6 C 1.52998 * 109.46656 * 65.00455 * 5 3 2 7 7 C 1.53004 * 109.46851 * 120.00096 * 3 2 1 8 8 C 1.50700 * 109.47130 * 184.99987 * 7 3 2 9 9 O 1.21280 * 119.99996 * 359.97438 * 8 7 3 10 10 N 1.34776 * 120.00096 * 180.02562 * 8 7 3 11 11 C 1.46500 * 120.00092 * 180.02562 * 10 8 7 12 12 H 1.08995 * 110.35315 * 32.85005 * 11 10 8 13 13 C 1.53996 * 110.30587 * 270.70765 * 11 10 8 14 14 N 1.47898 * 107.06161 * 242.30711 * 13 11 10 15 15 C 1.46895 * 111.00253 * 214.15676 * 14 13 11 16 16 C 1.50698 * 109.46977 * 307.39835 * 15 14 13 17 17 O 1.21290 * 120.00476 * 359.97438 * 16 15 14 18 18 N 1.34785 * 119.99907 * 180.02562 * 16 15 14 19 19 C 1.37096 * 119.99864 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00262 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99900 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00467 * 179.97438 * 21 19 18 23 23 Si 1.86808 * 119.99806 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46746 * 90.00261 * 23 21 19 25 25 H 1.48497 * 109.46939 * 210.00001 * 23 21 19 26 26 H 1.48497 * 109.47345 * 330.00401 * 23 21 19 27 27 C 1.48534 * 105.81836 * 334.67184 * 14 13 11 28 28 C 1.54594 * 110.30967 * 154.99548 * 11 10 8 29 29 H 1.09002 * 110.72539 * 22.51294 * 28 11 10 30 30 C 1.52998 * 110.87548 * 259.29785 * 28 11 10 31 31 H 1.08005 * 120.00291 * 0.02562 * 1 2 3 32 32 H 1.07998 * 120.00110 * 179.97438 * 1 2 3 33 33 H 1.07994 * 119.99992 * 179.97438 * 2 1 3 34 34 H 1.08998 * 109.47036 * 185.00365 * 5 3 2 35 35 H 1.09007 * 109.46910 * 305.00352 * 5 3 2 36 36 H 1.09000 * 109.47384 * 59.99912 * 6 5 3 37 37 H 1.09002 * 109.46761 * 180.02562 * 6 5 3 38 38 H 1.08998 * 109.47325 * 299.99733 * 6 5 3 39 39 H 1.08996 * 109.47421 * 64.99269 * 7 3 2 40 40 H 1.09002 * 109.47188 * 304.99675 * 7 3 2 41 41 H 0.97003 * 119.99708 * 359.97438 * 10 8 7 42 42 H 1.09002 * 109.91261 * 122.95403 * 13 11 10 43 43 H 1.09005 * 110.07833 * 1.75719 * 13 11 10 44 44 H 1.08997 * 109.47132 * 67.39933 * 15 14 13 45 45 H 1.08999 * 109.47397 * 187.39778 * 15 14 13 46 46 H 0.96994 * 119.99767 * 359.97438 * 18 16 15 47 47 H 0.96996 * 120.00595 * 180.02562 * 22 21 19 48 48 H 1.08991 * 110.66978 * 280.77118 * 27 14 13 49 49 H 1.09006 * 110.80663 * 157.70372 * 27 14 13 50 50 H 1.08994 * 109.47344 * 302.55970 * 30 28 11 51 51 H 1.09001 * 109.47034 * 62.55650 * 30 28 11 52 52 H 1.08994 * 109.47450 * 182.55783 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9431 1.3862 -1.2492 6 6 2.0564 1.4308 -2.4953 7 6 2.9430 1.3862 1.2493 8 6 3.6018 2.7401 1.3128 9 8 3.3892 3.5593 0.4442 10 7 4.4282 3.0402 2.3344 11 6 5.0682 4.3565 2.3964 12 1 4.4126 5.1171 1.9725 13 6 6.4135 4.3325 1.6474 14 7 7.4688 4.6260 2.6413 15 6 8.5636 5.3952 2.0350 16 6 9.0498 4.6867 0.7971 17 8 8.5353 3.6434 0.4537 18 7 10.0572 5.2119 0.0718 19 6 10.4992 4.5676 -1.0547 20 1 10.0405 3.6390 -1.3608 21 6 11.5374 5.1093 -1.8027 22 7 11.9614 4.4915 -2.8822 23 14 12.3304 6.7158 -1.2736 24 1 13.4674 6.4298 -0.3622 25 1 12.8259 7.4410 -2.4709 26 1 11.3282 7.5534 -0.5670 27 6 6.8051 5.4035 3.7189 28 6 5.4261 4.7107 3.8581 29 1 5.5070 3.8088 4.4648 30 6 4.3954 5.6714 4.4543 31 1 -0.5401 0.9353 -0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 1.8500 -0.9353 0.0004 34 1 3.5540 2.2879 -1.2055 35 1 3.5906 0.5105 -1.2951 36 1 1.4089 2.3064 -2.4494 37 1 2.6831 1.4881 -3.3853 38 1 1.4456 0.5291 -2.5390 39 1 3.7084 0.6113 1.2057 40 1 2.3278 1.2396 2.1370 41 1 4.5985 2.3848 3.0289 42 1 6.4172 5.0928 0.8664 43 1 6.5799 3.3487 1.2085 44 1 8.2048 6.3891 1.7676 45 1 9.3832 5.4845 2.7481 46 1 10.4690 6.0460 0.3465 47 1 12.6864 4.8694 -3.4042 48 1 6.6840 6.4454 3.4229 49 1 7.3671 5.3321 4.6502 50 1 4.3390 6.5705 3.8407 51 1 3.4193 5.1871 4.4796 52 1 4.6935 5.9412 5.4674 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208392686.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:55 Heat of formation + Delta-G solvation = -54.797298 kcal Electronic energy + Delta-G solvation = -29906.615756 eV Core-core repulsion = 25906.307449 eV Total energy + Delta-G solvation = -4000.308307 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.32435 -39.18077 -37.87892 -36.69221 -34.48676 -33.88258 -32.64891 -31.88196 -31.67246 -30.63232 -28.78698 -27.40580 -25.46746 -24.68680 -23.51467 -21.93843 -21.34403 -20.61402 -20.01559 -19.71594 -19.31459 -18.15158 -16.99013 -16.77415 -15.98438 -15.39833 -15.34850 -15.07713 -14.90942 -14.71302 -14.69275 -14.29296 -13.96953 -13.51448 -13.43785 -13.20450 -13.12188 -12.96646 -12.82820 -12.62750 -12.33557 -12.17213 -11.99737 -11.95741 -11.88020 -11.48999 -11.32047 -11.27752 -11.18877 -11.15080 -10.86701 -10.80131 -10.77023 -10.61780 -10.59123 -9.96979 -9.66812 -9.55885 -9.48051 -8.98476 -8.51544 -8.18221 -8.04557 -6.30452 -3.81799 2.07929 2.68882 3.02929 3.07129 3.15307 3.19717 3.73430 4.02728 4.10969 4.33769 4.57110 4.61675 4.67251 4.79691 4.87472 4.91539 5.04812 5.10499 5.21714 5.26439 5.28211 5.34266 5.38755 5.42364 5.44746 5.50471 5.62649 5.63113 5.64451 5.69282 5.75149 5.79450 5.85634 5.90284 5.91627 5.92293 6.05280 6.08815 6.15231 6.30892 6.36341 6.42057 6.51863 6.63397 6.72681 7.11199 7.14977 7.53127 7.58588 8.14864 8.28677 8.60150 8.95587 9.42683 9.82844 10.82662 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010390 B = 0.002873 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.375062 B = 9743.358476 C =11980.906688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.141 4.141 3 C -0.045 4.045 4 H 0.080 0.920 5 C -0.125 4.125 6 C -0.147 4.147 7 C -0.134 4.134 8 C 0.513 3.487 9 O -0.534 6.534 10 N -0.719 5.719 11 C 0.134 3.866 12 H 0.092 0.908 13 C 0.040 3.960 14 N -0.495 5.495 15 C 0.033 3.967 16 C 0.450 3.550 17 O -0.561 6.561 18 N -0.590 5.590 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.879 3.121 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.036 3.964 28 C -0.100 4.100 29 H 0.088 0.912 30 C -0.142 4.142 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.400 0.600 42 H 0.045 0.955 43 H 0.108 0.892 44 H 0.050 0.950 45 H 0.092 0.908 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.046 0.954 49 H 0.084 0.916 50 H 0.056 0.944 51 H 0.057 0.943 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.179 -1.777 14.603 24.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.159 4.159 3 C -0.064 4.064 4 H 0.099 0.901 5 C -0.162 4.162 6 C -0.204 4.204 7 C -0.174 4.174 8 C 0.300 3.700 9 O -0.411 6.411 10 N -0.370 5.370 11 C 0.029 3.971 12 H 0.110 0.890 13 C -0.088 4.088 14 N -0.219 5.219 15 C -0.099 4.099 16 C 0.236 3.764 17 O -0.443 6.443 18 N -0.229 5.229 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.092 4.092 28 C -0.119 4.119 29 H 0.106 0.894 30 C -0.199 4.199 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.105 0.895 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.234 0.766 42 H 0.064 0.936 43 H 0.126 0.874 44 H 0.068 0.932 45 H 0.110 0.890 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.064 0.936 49 H 0.102 0.898 50 H 0.075 0.925 51 H 0.076 0.924 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.286 -2.375 13.723 23.789 hybrid contribution 0.713 1.721 0.253 1.880 sum -18.573 -0.655 13.976 23.253 Atomic orbital electron populations 1.23829 0.95934 1.01656 1.01889 1.22967 0.95898 0.98161 0.98908 1.20158 0.96822 0.95479 0.93903 0.90131 1.21681 0.98008 1.03381 0.93117 1.21717 0.99721 1.01228 0.97732 1.21700 1.00271 0.95276 1.00192 1.20668 0.78631 0.89536 0.81199 1.90690 1.62413 1.50355 1.37630 1.46051 1.47403 1.16576 1.26982 1.22026 0.94589 0.85153 0.95361 0.88954 1.23333 0.87609 1.04646 0.93235 1.64625 1.08037 1.39518 1.09743 1.22149 0.95875 0.95242 0.96657 1.19632 0.83382 0.87624 0.85791 1.90539 1.58256 1.24124 1.71414 1.42194 1.32464 1.22963 1.25264 1.19421 1.15907 1.08114 0.99793 0.86284 1.25038 0.97036 0.98201 0.95884 1.69617 1.27790 1.39168 1.15532 0.86676 0.80150 0.83517 0.79074 1.19576 1.20174 1.19548 1.23354 0.93629 0.95611 0.96618 1.22325 0.94786 0.99503 0.95330 0.89378 1.21766 0.98354 0.99004 1.00814 0.88695 0.88655 0.87368 0.89474 0.92392 0.92973 0.92874 0.93160 0.88572 0.89044 0.76583 0.93618 0.87442 0.93180 0.88958 0.79716 0.91612 0.93579 0.89771 0.92462 0.92425 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.53 14.32 29.01 0.42 -1.12 16 2 C -0.14 -1.21 7.75 -36.02 -0.28 -1.49 16 3 C -0.04 -0.46 1.80 -91.77 -0.17 -0.63 16 4 H 0.08 0.92 7.60 -51.93 -0.39 0.52 16 5 C -0.12 -1.53 5.18 -26.73 -0.14 -1.67 16 6 C -0.15 -1.66 9.73 37.16 0.36 -1.29 16 7 C -0.13 -1.25 5.16 -27.88 -0.14 -1.40 16 8 C 0.51 6.50 7.51 -10.99 -0.08 6.42 16 9 O -0.53 -8.86 13.64 5.56 0.08 -8.78 16 10 N -0.72 -8.10 5.01 -52.49 -0.26 -8.37 16 11 C 0.13 1.72 2.92 -66.57 -0.19 1.53 16 12 H 0.09 1.30 7.28 -51.93 -0.38 0.92 16 13 C 0.04 0.69 4.87 -2.76 -0.01 0.67 16 14 N -0.49 -7.84 5.26 -231.90 -1.22 -9.06 16 15 C 0.03 0.56 5.48 -4.98 -0.03 0.53 16 16 C 0.45 10.33 7.35 -10.98 -0.08 10.25 16 17 O -0.56 -14.96 13.37 5.55 0.07 -14.88 16 18 N -0.59 -14.23 5.09 -10.96 -0.06 -14.29 16 19 C -0.30 -8.68 10.16 -14.93 -0.15 -8.83 16 20 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 21 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 22 N -0.88 -26.00 13.96 55.50 0.77 -25.23 16 23 Si 0.88 19.57 27.74 -169.99 -4.71 14.86 16 24 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 27 C 0.04 0.41 6.00 -1.90 -0.01 0.40 16 28 C -0.10 -0.99 3.36 -88.76 -0.30 -1.29 16 29 H 0.09 0.80 7.76 -51.93 -0.40 0.40 16 30 C -0.14 -1.14 9.16 37.16 0.34 -0.80 16 31 H 0.09 0.74 7.83 -52.48 -0.41 0.33 16 32 H 0.10 0.63 8.06 -52.49 -0.42 0.20 16 33 H 0.11 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.09 1.34 5.88 -51.93 -0.31 1.04 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.51 7.38 -51.93 -0.38 0.12 16 39 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.40 3.44 8.38 -40.82 -0.34 3.10 16 42 H 0.05 0.88 7.59 -51.93 -0.39 0.49 16 43 H 0.11 2.21 6.52 -51.93 -0.34 1.87 16 44 H 0.05 0.77 7.89 -51.93 -0.41 0.36 16 45 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.37 7.86 5.76 -40.82 -0.24 7.62 16 47 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 48 H 0.05 0.50 7.76 -51.93 -0.40 0.10 16 49 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 52 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 411.90 15.07 6.21 6.21 Total: -1.00 -34.12 411.90 -8.71 -42.84 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: -9.03 Total: 14.37 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -0.57 Total: 2.35 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.76 Total: -56.95 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: 0.15 Total: -23.67 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.71 Total: 14.86 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.12 -8.71 -42.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208392686.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.961 kcal (2) G-P(sol) polarization free energy of solvation -34.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds