Wall clock time and date at job start Tue Mar 31 2020 20:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 119.99610 * 2 1 4 4 H 1.08997 * 109.47346 * 0.02562 * 3 2 1 5 5 C 1.53006 * 109.47107 * 239.99625 * 3 2 1 6 6 C 1.52998 * 109.46656 * 65.00455 * 5 3 2 7 7 C 1.53004 * 109.46851 * 120.00096 * 3 2 1 8 8 C 1.50700 * 109.47130 * 184.99987 * 7 3 2 9 9 O 1.21280 * 119.99996 * 359.97438 * 8 7 3 10 10 N 1.34776 * 120.00096 * 180.02562 * 8 7 3 11 11 C 1.46500 * 120.00092 * 180.02562 * 10 8 7 12 12 H 1.08995 * 110.35315 * 32.85005 * 11 10 8 13 13 C 1.53996 * 110.30587 * 270.70765 * 11 10 8 14 14 N 1.47898 * 107.06161 * 242.30711 * 13 11 10 15 15 C 1.46895 * 111.00253 * 214.15676 * 14 13 11 16 16 C 1.50698 * 109.46977 * 307.39835 * 15 14 13 17 17 O 1.21290 * 120.00476 * 359.97438 * 16 15 14 18 18 N 1.34785 * 119.99907 * 180.02562 * 16 15 14 19 19 C 1.37096 * 119.99864 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00262 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99900 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00467 * 179.97438 * 21 19 18 23 23 Si 1.86808 * 119.99806 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46746 * 90.00261 * 23 21 19 25 25 H 1.48497 * 109.46939 * 210.00001 * 23 21 19 26 26 H 1.48497 * 109.47345 * 330.00401 * 23 21 19 27 27 C 1.48534 * 105.81836 * 334.67184 * 14 13 11 28 28 C 1.54594 * 110.30967 * 154.99548 * 11 10 8 29 29 H 1.09002 * 110.72539 * 22.51294 * 28 11 10 30 30 C 1.52998 * 110.87548 * 259.29785 * 28 11 10 31 31 H 1.08005 * 120.00291 * 0.02562 * 1 2 3 32 32 H 1.07998 * 120.00110 * 179.97438 * 1 2 3 33 33 H 1.07994 * 119.99992 * 179.97438 * 2 1 3 34 34 H 1.08998 * 109.47036 * 185.00365 * 5 3 2 35 35 H 1.09007 * 109.46910 * 305.00352 * 5 3 2 36 36 H 1.09000 * 109.47384 * 59.99912 * 6 5 3 37 37 H 1.09002 * 109.46761 * 180.02562 * 6 5 3 38 38 H 1.08998 * 109.47325 * 299.99733 * 6 5 3 39 39 H 1.08996 * 109.47421 * 64.99269 * 7 3 2 40 40 H 1.09002 * 109.47188 * 304.99675 * 7 3 2 41 41 H 0.97003 * 119.99708 * 359.97438 * 10 8 7 42 42 H 1.09002 * 109.91261 * 122.95403 * 13 11 10 43 43 H 1.09005 * 110.07833 * 1.75719 * 13 11 10 44 44 H 1.08997 * 109.47132 * 67.39933 * 15 14 13 45 45 H 1.08999 * 109.47397 * 187.39778 * 15 14 13 46 46 H 0.96994 * 119.99767 * 359.97438 * 18 16 15 47 47 H 0.96996 * 120.00595 * 180.02562 * 22 21 19 48 48 H 1.08991 * 110.66978 * 280.77118 * 27 14 13 49 49 H 1.09006 * 110.80663 * 157.70372 * 27 14 13 50 50 H 1.08994 * 109.47344 * 302.55970 * 30 28 11 51 51 H 1.09001 * 109.47034 * 62.55650 * 30 28 11 52 52 H 1.08994 * 109.47450 * 182.55783 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9431 1.3862 -1.2492 6 6 2.0564 1.4308 -2.4953 7 6 2.9430 1.3862 1.2493 8 6 3.6018 2.7401 1.3128 9 8 3.3892 3.5593 0.4442 10 7 4.4282 3.0402 2.3344 11 6 5.0682 4.3565 2.3964 12 1 4.4126 5.1171 1.9725 13 6 6.4135 4.3325 1.6474 14 7 7.4688 4.6260 2.6413 15 6 8.5636 5.3952 2.0350 16 6 9.0498 4.6867 0.7971 17 8 8.5353 3.6434 0.4537 18 7 10.0572 5.2119 0.0718 19 6 10.4992 4.5676 -1.0547 20 1 10.0405 3.6390 -1.3608 21 6 11.5374 5.1093 -1.8027 22 7 11.9614 4.4915 -2.8822 23 14 12.3304 6.7158 -1.2736 24 1 13.4674 6.4298 -0.3622 25 1 12.8259 7.4410 -2.4709 26 1 11.3282 7.5534 -0.5670 27 6 6.8051 5.4035 3.7189 28 6 5.4261 4.7107 3.8581 29 1 5.5070 3.8088 4.4648 30 6 4.3954 5.6714 4.4543 31 1 -0.5401 0.9353 -0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 1.8500 -0.9353 0.0004 34 1 3.5540 2.2879 -1.2055 35 1 3.5906 0.5105 -1.2951 36 1 1.4089 2.3064 -2.4494 37 1 2.6831 1.4881 -3.3853 38 1 1.4456 0.5291 -2.5390 39 1 3.7084 0.6113 1.2057 40 1 2.3278 1.2396 2.1370 41 1 4.5985 2.3848 3.0289 42 1 6.4172 5.0928 0.8664 43 1 6.5799 3.3487 1.2085 44 1 8.2048 6.3891 1.7676 45 1 9.3832 5.4845 2.7481 46 1 10.4690 6.0460 0.3465 47 1 12.6864 4.8694 -3.4042 48 1 6.6840 6.4454 3.4229 49 1 7.3671 5.3321 4.6502 50 1 4.3390 6.5705 3.8407 51 1 3.4193 5.1871 4.4796 52 1 4.6935 5.9412 5.4674 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208392686.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:54 Heat of formation + Delta-G solvation = -81.181180 kcal Electronic energy + Delta-G solvation = -29907.759847 eV Core-core repulsion = 25906.307449 eV Total energy + Delta-G solvation = -4001.452398 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.43790 -40.58129 -39.35516 -37.61229 -36.14491 -35.41437 -33.82831 -33.63416 -32.67271 -31.52768 -30.03169 -28.65543 -26.80792 -25.92381 -24.78592 -22.92671 -22.40615 -21.75401 -21.25790 -20.92489 -20.49520 -20.07735 -18.02498 -17.81725 -17.60989 -16.84099 -16.67605 -16.35035 -16.11097 -15.80885 -15.65066 -15.48755 -15.26713 -14.99155 -14.67984 -14.48629 -14.34796 -14.11671 -14.00889 -13.79170 -13.59154 -13.31758 -13.20620 -13.06012 -12.96037 -12.82438 -12.66594 -12.45337 -12.27622 -12.10213 -12.05379 -12.01033 -11.83496 -11.68442 -11.66701 -11.56990 -11.51452 -10.69465 -10.38225 -10.28501 -10.19501 -10.01626 -9.38659 -8.44498 -6.05639 1.27073 1.32754 1.41654 1.42782 1.67100 1.90773 2.20071 2.26108 2.65767 3.09352 3.14676 3.54065 3.66809 3.72863 3.80377 4.00135 4.06775 4.10548 4.19597 4.27038 4.33987 4.37836 4.39347 4.41721 4.48589 4.56505 4.58932 4.60662 4.69014 4.78220 4.82575 4.90148 4.95054 4.98986 5.01123 5.09334 5.13376 5.18582 5.21367 5.35876 5.38577 5.41847 5.49218 5.60897 5.78505 5.80388 5.88868 5.95568 6.02385 6.55733 6.60057 6.84517 7.32147 7.34975 7.92276 8.73331 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010390 B = 0.002873 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.375062 B = 9743.358476 C =11980.906688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.149 4.149 3 C -0.040 4.040 4 H 0.066 0.934 5 C -0.126 4.126 6 C -0.143 4.143 7 C -0.127 4.127 8 C 0.505 3.495 9 O -0.581 6.581 10 N -0.709 5.709 11 C 0.141 3.859 12 H 0.078 0.922 13 C 0.049 3.951 14 N -0.508 5.508 15 C 0.043 3.957 16 C 0.445 3.555 17 O -0.607 6.607 18 N -0.591 5.591 19 C -0.328 4.328 20 H 0.053 0.947 21 C -0.016 4.016 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.253 1.253 25 H -0.274 1.274 26 H -0.234 1.234 27 C 0.036 3.964 28 C -0.086 4.086 29 H 0.105 0.895 30 C -0.136 4.136 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.047 0.953 35 H 0.059 0.941 36 H 0.047 0.953 37 H 0.045 0.955 38 H 0.067 0.933 39 H 0.107 0.893 40 H 0.124 0.876 41 H 0.415 0.585 42 H 0.009 0.991 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.129 0.871 46 H 0.389 0.611 47 H 0.280 0.720 48 H 0.057 0.943 49 H 0.112 0.888 50 H 0.051 0.949 51 H 0.061 0.939 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.831 -0.149 18.636 27.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.167 4.167 3 C -0.058 4.058 4 H 0.084 0.916 5 C -0.164 4.164 6 C -0.200 4.200 7 C -0.167 4.167 8 C 0.293 3.707 9 O -0.461 6.461 10 N -0.361 5.361 11 C 0.035 3.965 12 H 0.096 0.904 13 C -0.081 4.081 14 N -0.233 5.233 15 C -0.088 4.088 16 C 0.233 3.767 17 O -0.491 6.491 18 N -0.232 5.232 19 C -0.457 4.457 20 H 0.071 0.929 21 C -0.214 4.214 22 N -0.575 5.575 23 Si 0.786 3.214 24 H -0.177 1.177 25 H -0.199 1.199 26 H -0.157 1.157 27 C -0.091 4.091 28 C -0.105 4.105 29 H 0.123 0.877 30 C -0.193 4.193 31 H 0.111 0.889 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.126 0.874 40 H 0.143 0.857 41 H 0.253 0.747 42 H 0.027 0.973 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.146 0.854 46 H 0.225 0.775 47 H 0.089 0.911 48 H 0.075 0.925 49 H 0.130 0.870 50 H 0.070 0.930 51 H 0.080 0.920 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.950 -0.760 17.818 26.759 hybrid contribution 0.848 1.089 -1.066 1.743 sum -19.103 0.329 16.752 25.410 Atomic orbital electron populations 1.23993 0.95676 1.02446 1.00152 1.22865 0.96101 0.97328 1.00433 1.20055 0.96365 0.96297 0.93130 0.91553 1.21641 0.98277 1.01383 0.95090 1.21685 0.99523 1.01855 0.96949 1.21741 1.00638 0.93123 1.01169 1.21370 0.78421 0.90379 0.80512 1.90675 1.64072 1.52052 1.39272 1.45978 1.46545 1.16521 1.27064 1.21867 0.91888 0.85641 0.97151 0.90407 1.23056 0.90782 1.00811 0.93416 1.64598 1.07741 1.41059 1.09911 1.22128 0.97385 0.95211 0.94114 1.20936 0.81855 0.87031 0.86852 1.90540 1.59274 1.26467 1.72843 1.42020 1.33243 1.23638 1.24346 1.18973 1.17161 1.07160 1.02444 0.92925 1.26143 0.96913 1.03178 0.95215 1.69803 1.28660 1.41837 1.17202 0.85352 0.79722 0.77127 0.79231 1.17729 1.19947 1.15691 1.23548 0.94124 0.95694 0.95740 1.22327 0.94609 1.00641 0.92969 0.87727 1.21731 0.97799 0.98107 1.01683 0.88878 0.86877 0.86219 0.93432 0.92262 0.93405 0.93594 0.91383 0.87430 0.85747 0.74747 0.97278 0.92075 0.90677 0.85370 0.77495 0.91089 0.92453 0.87027 0.93004 0.92022 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.54 14.32 67.78 0.97 -1.57 16 2 C -0.15 -2.34 7.75 25.65 0.20 -2.14 16 3 C -0.04 -0.82 1.80 -11.54 -0.02 -0.84 16 4 H 0.07 1.56 7.60 -2.39 -0.02 1.55 16 5 C -0.13 -3.34 5.18 30.60 0.16 -3.18 16 6 C -0.14 -3.40 9.73 71.98 0.70 -2.70 16 7 C -0.13 -2.32 5.16 29.85 0.15 -2.16 16 8 C 0.50 13.32 7.51 87.66 0.66 13.98 16 9 O -0.58 -20.83 13.64 -3.03 -0.04 -20.88 16 10 N -0.71 -16.04 5.01 -438.38 -2.20 -18.24 16 11 C 0.14 3.63 2.92 45.87 0.13 3.76 16 12 H 0.08 2.26 7.28 -2.39 -0.02 2.24 16 13 C 0.05 1.74 4.87 86.45 0.42 2.17 16 14 N -0.51 -15.53 5.26 -887.58 -4.67 -20.20 16 15 C 0.04 1.38 5.48 85.56 0.47 1.85 16 16 C 0.45 21.00 7.35 87.66 0.64 21.65 16 17 O -0.61 -34.69 13.37 -3.06 -0.04 -34.73 16 18 N -0.59 -28.93 5.09 -306.98 -1.56 -30.49 16 19 C -0.33 -19.83 10.16 84.04 0.85 -18.98 16 20 H 0.05 3.79 7.39 -2.91 -0.02 3.77 16 21 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 22 N -0.93 -57.63 13.96 21.66 0.30 -57.33 16 23 Si 0.97 39.71 27.74 68.60 1.90 41.61 16 24 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 H -0.23 -8.15 6.52 99.48 0.65 -7.51 16 27 C 0.04 0.70 6.00 86.65 0.52 1.22 16 28 C -0.09 -1.47 3.36 -9.59 -0.03 -1.50 16 29 H 0.10 1.49 7.76 -2.39 -0.02 1.48 16 30 C -0.14 -1.70 9.16 71.98 0.66 -1.05 16 31 H 0.09 1.31 7.83 -2.91 -0.02 1.29 16 32 H 0.11 1.17 8.06 -2.91 -0.02 1.15 16 33 H 0.12 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.05 1.64 5.88 -2.39 -0.01 1.62 16 35 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.36 7.38 -2.39 -0.02 1.34 16 39 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.42 6.63 8.38 -92.71 -0.78 5.85 16 42 H 0.01 0.37 7.59 -2.39 -0.02 0.35 16 43 H 0.06 2.74 6.52 -2.38 -0.02 2.73 16 44 H 0.08 2.09 7.89 -2.39 -0.02 2.07 16 45 H 0.13 3.28 8.14 -2.39 -0.02 3.26 16 46 H 0.39 15.78 5.76 -92.71 -0.53 15.24 16 47 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 48 H 0.06 1.03 7.76 -2.39 -0.02 1.01 16 49 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 50 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 52 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -85.24 411.90 0.19 -85.05 By element: Atomic # 1 Polarization: 45.60 SS G_CDS: -0.46 Total: 45.13 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 6.96 Total: 10.06 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -8.13 Total: -126.26 kcal Atomic # 8 Polarization: -55.52 SS G_CDS: -0.08 Total: -55.60 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 1.90 Total: 41.61 kcal Total: -85.24 0.19 -85.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208392686.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.873 kcal (2) G-P(sol) polarization free energy of solvation -85.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds