Wall clock time and date at job start Tue Mar 31 2020 20:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00396 * 2 1 4 4 H 1.09002 * 109.46882 * 359.97438 * 3 2 1 5 5 C 1.52992 * 109.47650 * 119.99722 * 3 2 1 6 6 C 1.53001 * 109.46877 * 295.00036 * 5 3 2 7 7 C 1.53008 * 109.46859 * 240.00110 * 3 2 1 8 8 C 1.50695 * 109.47331 * 64.99242 * 7 3 2 9 9 O 1.21289 * 120.00129 * 0.02562 * 8 7 3 10 10 N 1.34776 * 120.00021 * 179.97438 * 8 7 3 11 11 C 1.46924 * 120.62983 * 0.02562 * 10 8 7 12 12 C 1.53197 * 108.77716 * 126.38605 * 11 10 8 13 13 C 1.53035 * 109.31122 * 54.63462 * 12 11 10 14 14 C 1.53044 * 109.53929 * 298.63202 * 13 12 11 15 15 H 1.09001 * 109.49770 * 301.38590 * 14 13 12 16 16 N 1.46895 * 109.49861 * 181.31569 * 14 13 12 17 17 C 1.46906 * 110.99789 * 85.06733 * 16 14 13 18 18 C 1.50703 * 109.47109 * 179.97438 * 17 16 14 19 19 O 1.21296 * 119.99996 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99978 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99848 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00405 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99358 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00464 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99431 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46988 * 60.00440 * 25 23 21 27 27 H 1.48496 * 109.47065 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47452 * 300.00298 * 25 23 21 29 29 C 1.46932 * 120.60213 * 179.97438 * 10 8 7 30 30 H 1.07994 * 119.99593 * 0.02562 * 1 2 3 31 31 H 1.07996 * 119.99791 * 180.02562 * 1 2 3 32 32 H 1.07999 * 120.00049 * 179.97438 * 2 1 3 33 33 H 1.08998 * 109.47000 * 54.99757 * 5 3 2 34 34 H 1.08998 * 109.47286 * 175.00227 * 5 3 2 35 35 H 1.09002 * 109.47315 * 60.00412 * 6 5 3 36 36 H 1.09002 * 109.47140 * 179.97438 * 6 5 3 37 37 H 1.08994 * 109.47541 * 299.99564 * 6 5 3 38 38 H 1.09001 * 109.46727 * 304.99412 * 7 3 2 39 39 H 1.08992 * 109.46553 * 184.99620 * 7 3 2 40 40 H 1.08998 * 109.58621 * 6.60037 * 11 10 8 41 41 H 1.08994 * 109.70455 * 246.24351 * 11 10 8 42 42 H 1.09000 * 109.49558 * 294.68140 * 12 11 10 43 43 H 1.09000 * 109.52301 * 174.60242 * 12 11 10 44 44 H 1.09003 * 109.46054 * 178.62117 * 13 12 11 45 45 H 1.08999 * 109.46285 * 58.65604 * 13 12 11 46 46 H 1.00902 * 111.00273 * 209.02256 * 16 14 13 47 47 H 1.08992 * 109.47459 * 299.99826 * 17 16 14 48 48 H 1.09004 * 109.47040 * 59.99976 * 17 16 14 49 49 H 0.97002 * 119.99767 * 359.97438 * 20 18 17 50 50 H 0.96997 * 119.99770 * 179.97438 * 24 23 21 51 51 H 1.09005 * 109.55770 * 113.81609 * 29 10 8 52 52 H 1.08992 * 109.62016 * 353.38148 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3553 2.1336 -0.0005 5 6 2.9432 1.3862 1.2492 6 6 2.0564 1.4309 2.4952 7 6 2.9432 1.3860 -1.2493 8 6 2.0699 1.4298 -2.4766 9 8 0.8627 1.3997 -2.3633 10 7 2.6303 1.5034 -3.7002 11 6 4.0910 1.5411 -3.8535 12 6 4.5144 0.4294 -4.8187 13 6 3.7407 0.5766 -6.1309 14 6 2.2412 0.4353 -5.8595 15 1 2.0435 -0.5358 -5.4056 16 7 1.5016 0.5453 -7.1239 17 6 1.4340 -0.7526 -7.8088 18 6 0.6692 -0.6008 -9.0984 19 8 0.2246 0.4821 -9.4160 20 7 0.4792 -1.6683 -9.8989 21 6 -0.2161 -1.5301 -11.0724 22 1 -0.6120 -0.5659 -11.3552 23 6 -0.4114 -2.6306 -11.8978 24 7 0.0707 -3.8038 -11.5540 25 14 -1.3595 -2.4425 -13.4964 26 1 -0.6693 -1.4581 -14.3682 27 1 -1.4272 -3.7542 -14.1890 28 1 -2.7347 -1.9653 -13.2031 29 6 1.7914 1.5462 -4.9057 30 1 -0.5399 0.9353 -0.0004 31 1 -0.5399 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 3.5906 0.5105 1.2952 34 1 3.5541 2.2879 1.2055 35 1 1.4456 0.5292 2.5390 36 1 2.6831 1.4882 3.3853 37 1 1.4091 2.3065 2.4493 38 1 3.5907 0.5103 -1.2951 39 1 3.5541 2.2876 -1.2057 40 1 4.5643 1.3835 -2.8844 41 1 4.3935 2.5083 -4.2548 42 1 4.2954 -0.5414 -4.3741 43 1 5.5836 0.5062 -5.0162 44 1 4.0580 -0.1986 -6.8284 45 1 3.9409 1.5573 -6.5625 46 1 0.5781 0.9220 -6.9711 47 1 2.4434 -1.1030 -8.0238 48 1 0.9271 -1.4751 -7.1691 49 1 0.8351 -2.5342 -9.6451 50 1 -0.0660 -4.5720 -12.1301 51 1 1.9034 2.5142 -5.3941 52 1 0.7480 1.3915 -4.6312 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209182186.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:54 Heat of formation + Delta-G solvation = -66.317632 kcal Electronic energy + Delta-G solvation = -29264.447375 eV Core-core repulsion = 25263.639508 eV Total energy + Delta-G solvation = -4000.807866 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.54081 -38.60611 -37.89192 -36.73372 -35.11539 -33.84391 -32.39623 -31.97457 -31.30979 -31.07311 -29.66060 -26.35844 -26.04841 -24.55620 -23.69532 -22.68410 -21.94571 -20.58538 -19.83006 -19.34228 -18.94716 -17.87631 -17.32287 -16.35109 -16.10808 -15.78760 -15.31694 -15.05583 -14.99274 -14.69024 -14.54985 -14.33718 -14.14417 -13.92617 -13.83829 -13.57011 -13.49260 -13.17721 -12.89866 -12.55930 -12.43305 -12.24373 -12.15827 -11.86119 -11.62887 -11.52117 -11.51023 -11.41167 -11.19560 -11.05557 -11.02095 -10.85051 -10.76184 -10.72573 -10.43274 -10.20367 -9.96504 -9.48889 -9.29452 -8.80263 -8.44891 -8.08688 -7.94977 -6.40513 -3.81354 2.27533 2.50347 2.74562 3.21256 3.26701 3.31343 3.91947 4.08961 4.18907 4.29651 4.44006 4.47753 4.62017 4.70755 4.76212 4.88474 4.90648 4.93817 5.05827 5.09630 5.13131 5.14304 5.21872 5.26371 5.27112 5.37289 5.44039 5.53086 5.55437 5.58295 5.63736 5.68229 5.73891 5.80191 5.81215 5.89771 5.91341 5.97286 5.99875 6.06228 6.18655 6.28641 6.33761 6.57905 6.76773 7.17894 7.25182 7.56177 7.63532 8.04160 8.07227 8.62431 9.18890 9.55336 10.06892 10.77165 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020866 B = 0.001904 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.547899 B =14705.930788 C =15342.875606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.155 4.155 3 C -0.045 4.045 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.133 4.133 8 C 0.512 3.488 9 O -0.531 6.531 10 N -0.612 5.612 11 C 0.106 3.894 12 C -0.135 4.135 13 C -0.110 4.110 14 C 0.075 3.925 15 H 0.044 0.956 16 N -0.661 5.661 17 C 0.053 3.947 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 C 0.111 3.889 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.351 0.649 47 H 0.085 0.915 48 H 0.043 0.957 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.077 0.923 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.808 7.378 25.779 29.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.173 4.173 3 C -0.063 4.063 4 H 0.099 0.901 5 C -0.153 4.153 6 C -0.209 4.209 7 C -0.172 4.172 8 C 0.301 3.699 9 O -0.407 6.407 10 N -0.346 5.346 11 C -0.017 4.017 12 C -0.174 4.174 13 C -0.148 4.148 14 C -0.036 4.036 15 H 0.062 0.938 16 N -0.294 5.294 17 C -0.080 4.080 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.012 4.012 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.171 0.829 47 H 0.104 0.896 48 H 0.061 0.939 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.095 0.905 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.367 8.124 25.162 28.781 hybrid contribution -0.717 -1.199 -0.353 1.441 sum 10.650 6.924 24.809 27.872 Atomic orbital electron populations 1.23715 0.95940 1.01390 0.98761 1.22607 0.95995 0.96984 1.01723 1.20172 0.96566 0.97174 0.92426 0.90087 1.21535 0.97849 1.01895 0.94037 1.21759 0.99839 1.02208 0.97070 1.21744 0.98730 1.04083 0.92687 1.20687 0.89088 0.75875 0.84288 1.90719 1.14772 1.49101 1.86073 1.48098 1.07023 1.73619 1.05899 1.21783 0.79798 0.99606 1.00475 1.21943 1.00431 0.98801 0.96220 1.21548 0.93623 1.03354 0.96274 1.21825 0.94990 0.97364 0.89373 0.93770 1.60097 1.23566 1.25231 1.20538 1.21709 1.00857 0.90327 0.95123 1.19791 0.85724 0.85440 0.86405 1.90524 1.54474 1.26507 1.75173 1.41853 1.49040 1.09665 1.19457 1.19663 1.30004 0.97094 0.96185 0.87954 1.25264 0.98061 0.94723 0.99892 1.69605 1.45857 0.99944 1.38949 0.85910 0.79893 0.77264 0.81101 1.19884 1.20989 1.19917 1.21696 0.95935 0.99223 0.84307 0.88629 0.89174 0.88146 0.91837 0.91855 0.92355 0.92915 0.92796 0.88886 0.88864 0.89825 0.91041 0.91621 0.90372 0.91381 0.90848 0.82883 0.89636 0.93885 0.77477 0.91836 0.90472 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 13.22 29.01 0.38 -1.25 16 2 C -0.16 -1.41 6.76 -36.02 -0.24 -1.66 16 3 C -0.04 -0.35 1.82 -91.77 -0.17 -0.51 16 4 H 0.08 0.76 7.60 -51.93 -0.39 0.36 16 5 C -0.12 -0.67 5.39 -26.73 -0.14 -0.81 16 6 C -0.15 -0.91 9.73 37.16 0.36 -0.55 16 7 C -0.13 -0.94 3.51 -27.88 -0.10 -1.04 16 8 C 0.51 5.57 7.45 -10.99 -0.08 5.49 16 9 O -0.53 -7.69 13.58 5.55 0.08 -7.62 16 10 N -0.61 -6.15 2.97 -172.78 -0.51 -6.66 16 11 C 0.11 0.74 6.34 -3.71 -0.02 0.72 16 12 C -0.14 -1.04 6.08 -26.61 -0.16 -1.20 16 13 C -0.11 -1.19 5.40 -26.69 -0.14 -1.33 16 14 C 0.08 0.96 2.64 -67.61 -0.18 0.78 16 15 H 0.04 0.60 7.80 -51.93 -0.41 0.19 16 16 N -0.66 -10.80 5.94 -107.88 -0.64 -11.44 16 17 C 0.05 0.95 5.97 -4.97 -0.03 0.92 16 18 C 0.44 10.57 7.82 -10.98 -0.09 10.49 16 19 O -0.58 -16.03 15.78 5.54 0.09 -15.94 16 20 N -0.56 -14.49 5.29 -10.96 -0.06 -14.55 16 21 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 22 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.75 13.05 55.50 0.72 -24.02 16 25 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 29 C 0.11 1.34 5.70 -3.72 -0.02 1.32 16 30 H 0.10 1.03 7.83 -52.49 -0.41 0.62 16 31 H 0.09 0.86 8.06 -52.49 -0.42 0.43 16 32 H 0.10 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.39 7.38 -51.93 -0.38 0.00 16 36 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.09 0.53 7.69 -51.93 -0.40 0.13 16 39 H 0.09 0.48 7.94 -51.93 -0.41 0.06 16 40 H 0.08 0.39 5.93 -51.93 -0.31 0.08 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.79 7.43 -51.93 -0.39 0.41 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.35 6.03 8.06 -39.29 -0.32 5.71 16 47 H 0.09 1.42 7.42 -51.93 -0.39 1.03 16 48 H 0.04 0.72 8.06 -51.93 -0.42 0.30 16 49 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 50 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 51 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 52 H 0.09 1.26 7.00 -51.93 -0.36 0.90 16 LS Contribution 413.38 15.07 6.23 6.23 Total: -1.00 -32.99 413.38 -9.06 -42.05 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -9.07 Total: 12.45 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -0.87 Total: 3.25 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.49 Total: -56.67 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: 0.16 Total: -23.56 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.99 -9.06 -42.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209182186.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.268 kcal (2) G-P(sol) polarization free energy of solvation -32.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds