Wall clock time and date at job start Tue Mar 31 2020 20:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00396 * 2 1 4 4 H 1.09002 * 109.46882 * 359.97438 * 3 2 1 5 5 C 1.52992 * 109.47650 * 119.99722 * 3 2 1 6 6 C 1.53001 * 109.46877 * 295.00036 * 5 3 2 7 7 C 1.53008 * 109.46859 * 240.00110 * 3 2 1 8 8 C 1.50695 * 109.47331 * 64.99242 * 7 3 2 9 9 O 1.21289 * 120.00129 * 0.02562 * 8 7 3 10 10 N 1.34776 * 120.00021 * 179.97438 * 8 7 3 11 11 C 1.46924 * 120.62983 * 0.02562 * 10 8 7 12 12 C 1.53197 * 108.77716 * 126.38605 * 11 10 8 13 13 C 1.53035 * 109.31122 * 54.63462 * 12 11 10 14 14 C 1.53044 * 109.53929 * 298.63202 * 13 12 11 15 15 H 1.09001 * 109.49770 * 301.38590 * 14 13 12 16 16 N 1.46895 * 109.49861 * 181.31569 * 14 13 12 17 17 C 1.46906 * 110.99789 * 85.06733 * 16 14 13 18 18 C 1.50703 * 109.47109 * 179.97438 * 17 16 14 19 19 O 1.21296 * 119.99996 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99978 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99848 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00405 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99358 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00464 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99431 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46988 * 60.00440 * 25 23 21 27 27 H 1.48496 * 109.47065 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47452 * 300.00298 * 25 23 21 29 29 C 1.46932 * 120.60213 * 179.97438 * 10 8 7 30 30 H 1.07994 * 119.99593 * 0.02562 * 1 2 3 31 31 H 1.07996 * 119.99791 * 180.02562 * 1 2 3 32 32 H 1.07999 * 120.00049 * 179.97438 * 2 1 3 33 33 H 1.08998 * 109.47000 * 54.99757 * 5 3 2 34 34 H 1.08998 * 109.47286 * 175.00227 * 5 3 2 35 35 H 1.09002 * 109.47315 * 60.00412 * 6 5 3 36 36 H 1.09002 * 109.47140 * 179.97438 * 6 5 3 37 37 H 1.08994 * 109.47541 * 299.99564 * 6 5 3 38 38 H 1.09001 * 109.46727 * 304.99412 * 7 3 2 39 39 H 1.08992 * 109.46553 * 184.99620 * 7 3 2 40 40 H 1.08998 * 109.58621 * 6.60037 * 11 10 8 41 41 H 1.08994 * 109.70455 * 246.24351 * 11 10 8 42 42 H 1.09000 * 109.49558 * 294.68140 * 12 11 10 43 43 H 1.09000 * 109.52301 * 174.60242 * 12 11 10 44 44 H 1.09003 * 109.46054 * 178.62117 * 13 12 11 45 45 H 1.08999 * 109.46285 * 58.65604 * 13 12 11 46 46 H 1.00902 * 111.00273 * 209.02256 * 16 14 13 47 47 H 1.08992 * 109.47459 * 299.99826 * 17 16 14 48 48 H 1.09004 * 109.47040 * 59.99976 * 17 16 14 49 49 H 0.97002 * 119.99767 * 359.97438 * 20 18 17 50 50 H 0.96997 * 119.99770 * 179.97438 * 24 23 21 51 51 H 1.09005 * 109.55770 * 113.81609 * 29 10 8 52 52 H 1.08992 * 109.62016 * 353.38148 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3553 2.1336 -0.0005 5 6 2.9432 1.3862 1.2492 6 6 2.0564 1.4309 2.4952 7 6 2.9432 1.3860 -1.2493 8 6 2.0699 1.4298 -2.4766 9 8 0.8627 1.3997 -2.3633 10 7 2.6303 1.5034 -3.7002 11 6 4.0910 1.5411 -3.8535 12 6 4.5144 0.4294 -4.8187 13 6 3.7407 0.5766 -6.1309 14 6 2.2412 0.4353 -5.8595 15 1 2.0435 -0.5358 -5.4056 16 7 1.5016 0.5453 -7.1239 17 6 1.4340 -0.7526 -7.8088 18 6 0.6692 -0.6008 -9.0984 19 8 0.2246 0.4821 -9.4160 20 7 0.4792 -1.6683 -9.8989 21 6 -0.2161 -1.5301 -11.0724 22 1 -0.6120 -0.5659 -11.3552 23 6 -0.4114 -2.6306 -11.8978 24 7 0.0707 -3.8038 -11.5540 25 14 -1.3595 -2.4425 -13.4964 26 1 -0.6693 -1.4581 -14.3682 27 1 -1.4272 -3.7542 -14.1890 28 1 -2.7347 -1.9653 -13.2031 29 6 1.7914 1.5462 -4.9057 30 1 -0.5399 0.9353 -0.0004 31 1 -0.5399 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 3.5906 0.5105 1.2952 34 1 3.5541 2.2879 1.2055 35 1 1.4456 0.5292 2.5390 36 1 2.6831 1.4882 3.3853 37 1 1.4091 2.3065 2.4493 38 1 3.5907 0.5103 -1.2951 39 1 3.5541 2.2876 -1.2057 40 1 4.5643 1.3835 -2.8844 41 1 4.3935 2.5083 -4.2548 42 1 4.2954 -0.5414 -4.3741 43 1 5.5836 0.5062 -5.0162 44 1 4.0580 -0.1986 -6.8284 45 1 3.9409 1.5573 -6.5625 46 1 0.5781 0.9220 -6.9711 47 1 2.4434 -1.1030 -8.0238 48 1 0.9271 -1.4751 -7.1691 49 1 0.8351 -2.5342 -9.6451 50 1 -0.0660 -4.5720 -12.1301 51 1 1.9034 2.5142 -5.3941 52 1 0.7480 1.3915 -4.6312 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209182186.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:53 Heat of formation + Delta-G solvation = -88.612433 kcal Electronic energy + Delta-G solvation = -29265.414150 eV Core-core repulsion = 25263.639508 eV Total energy + Delta-G solvation = -4001.774641 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.36416 -40.22566 -39.04010 -37.47654 -36.37671 -35.77417 -33.35387 -33.19177 -32.59463 -31.96714 -30.59723 -27.95094 -26.80063 -25.97320 -24.75346 -23.51501 -22.51934 -21.49941 -21.16788 -20.51446 -19.98219 -19.72684 -18.20145 -17.79468 -17.12631 -16.81104 -16.55960 -16.45803 -16.10699 -15.70276 -15.60076 -15.42814 -15.29223 -15.14114 -14.82403 -14.57390 -14.29479 -14.25154 -13.85342 -13.68018 -13.56870 -13.41564 -13.28502 -12.99045 -12.90904 -12.82859 -12.45443 -12.37532 -12.16668 -12.12835 -12.04754 -11.82890 -11.81541 -11.63233 -11.61821 -11.52255 -11.34837 -10.78541 -10.38527 -10.04490 -10.03545 -9.65922 -9.41019 -8.48516 -5.97741 1.38652 1.40591 1.51766 1.53298 1.71014 1.95269 2.01660 2.28347 2.90513 3.18131 3.41204 3.55721 3.79624 3.84557 3.90155 3.95445 4.06633 4.11737 4.25282 4.28319 4.36589 4.38944 4.41750 4.47181 4.51332 4.51775 4.59693 4.66034 4.70568 4.79161 4.80487 4.87372 5.00307 5.02042 5.05792 5.07939 5.13969 5.20839 5.21681 5.37343 5.39757 5.41979 5.48474 5.50459 5.83498 5.85731 6.05000 6.05452 6.28065 6.47760 6.57152 7.09747 7.24838 7.52540 8.07765 8.68618 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020866 B = 0.001904 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.547899 B =14705.930788 C =15342.875606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.146 4.146 3 C -0.045 4.045 4 H 0.058 0.942 5 C -0.109 4.109 6 C -0.154 4.154 7 C -0.124 4.124 8 C 0.503 3.497 9 O -0.577 6.577 10 N -0.610 5.610 11 C 0.102 3.898 12 C -0.127 4.127 13 C -0.109 4.109 14 C 0.081 3.919 15 H 0.039 0.961 16 N -0.672 5.672 17 C 0.069 3.931 18 C 0.437 3.563 19 O -0.622 6.622 20 N -0.571 5.571 21 C -0.337 4.337 22 H 0.079 0.921 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.995 3.005 26 H -0.271 1.271 27 H -0.269 1.269 28 H -0.273 1.273 29 C 0.118 3.882 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.045 0.955 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.104 0.896 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.342 0.658 47 H 0.106 0.894 48 H 0.059 0.941 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.075 0.925 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.707 7.070 26.861 31.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.164 4.164 3 C -0.064 4.064 4 H 0.076 0.924 5 C -0.146 4.146 6 C -0.211 4.211 7 C -0.164 4.164 8 C 0.293 3.707 9 O -0.456 6.456 10 N -0.344 5.344 11 C -0.020 4.020 12 C -0.166 4.166 13 C -0.147 4.147 14 C -0.029 4.029 15 H 0.057 0.943 16 N -0.304 5.304 17 C -0.064 4.064 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.209 5.209 21 C -0.466 4.466 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.818 3.182 26 H -0.196 1.196 27 H -0.194 1.194 28 H -0.198 1.198 29 C -0.006 4.006 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.131 0.869 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.137 0.863 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.122 0.878 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.161 0.839 47 H 0.124 0.876 48 H 0.077 0.923 49 H 0.230 0.770 50 H 0.088 0.912 51 H 0.093 0.907 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.322 7.798 26.267 30.917 hybrid contribution -1.611 -1.078 -0.663 2.049 sum 12.710 6.720 25.604 29.364 Atomic orbital electron populations 1.23681 0.96763 1.00711 1.01214 1.22881 0.95697 0.98281 0.99508 1.20179 0.96635 0.95420 0.94142 0.92361 1.21508 0.97457 1.03374 0.92271 1.21777 0.99970 1.01333 0.98045 1.21805 0.98162 1.06661 0.89738 1.21493 0.89030 0.74794 0.85382 1.90715 1.17038 1.51165 1.86730 1.48217 1.08290 1.73007 1.04885 1.22088 0.77608 0.99960 1.02304 1.21921 1.01338 0.99068 0.94261 1.21558 0.92162 1.02754 0.98221 1.21876 0.95966 0.97282 0.87762 0.94278 1.60162 1.23355 1.24272 1.22648 1.21543 1.00897 0.91663 0.92271 1.20802 0.84819 0.84297 0.87607 1.90491 1.55954 1.27955 1.76473 1.41917 1.49271 1.10316 1.19360 1.19651 1.32083 0.96813 0.98082 0.90280 1.26064 0.98383 0.94114 1.02672 1.69666 1.45964 1.00377 1.40003 0.84970 0.78347 0.77816 0.77083 1.19613 1.19355 1.19787 1.21432 0.95213 0.98762 0.85237 0.90212 0.89198 0.86947 0.90457 0.90130 0.93455 0.91713 0.93577 0.86319 0.85834 0.86345 0.89948 0.91634 0.87762 0.92191 0.91355 0.83900 0.87619 0.92318 0.76984 0.91228 0.90687 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.01 13.22 67.78 0.90 -3.12 16 2 C -0.15 -2.56 6.76 25.65 0.17 -2.38 16 3 C -0.04 -0.62 1.82 -11.54 -0.02 -0.64 16 4 H 0.06 1.09 7.60 -2.39 -0.02 1.07 16 5 C -0.11 -0.93 5.39 30.59 0.16 -0.77 16 6 C -0.15 -1.63 9.73 71.98 0.70 -0.93 16 7 C -0.12 -1.34 3.51 29.85 0.10 -1.24 16 8 C 0.50 10.24 7.45 87.66 0.65 10.89 16 9 O -0.58 -17.15 13.58 -3.06 -0.04 -17.20 16 10 N -0.61 -11.17 2.97 -818.95 -2.43 -13.60 16 11 C 0.10 1.02 6.34 86.36 0.55 1.57 16 12 C -0.13 -1.49 6.08 30.67 0.19 -1.31 16 13 C -0.11 -2.15 5.40 30.62 0.17 -1.99 16 14 C 0.08 2.03 2.64 44.99 0.12 2.15 16 15 H 0.04 1.03 7.80 -2.39 -0.02 1.01 16 16 N -0.67 -22.19 5.94 -495.21 -2.94 -25.13 16 17 C 0.07 2.47 5.97 85.56 0.51 2.98 16 18 C 0.44 21.46 7.82 87.66 0.69 22.14 16 19 O -0.62 -35.42 15.78 -3.08 -0.05 -35.47 16 20 N -0.57 -30.04 5.29 -306.98 -1.62 -31.66 16 21 C -0.34 -19.50 9.68 84.04 0.81 -18.68 16 22 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 23 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 24 N -0.92 -50.13 13.05 21.66 0.28 -49.85 16 25 Si 0.99 43.46 29.55 68.60 2.03 45.49 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 27 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 28 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 29 C 0.12 2.84 5.70 86.35 0.49 3.33 16 30 H 0.08 1.92 7.83 -2.91 -0.02 1.90 16 31 H 0.09 1.84 8.06 -2.91 -0.02 1.81 16 32 H 0.11 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.05 0.60 7.38 -2.39 -0.02 0.58 16 36 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.12 0.74 7.69 -2.39 -0.02 0.72 16 39 H 0.12 0.65 7.94 -2.39 -0.02 0.63 16 40 H 0.12 0.42 5.93 -2.39 -0.01 0.41 16 41 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.06 1.29 7.43 -2.39 -0.02 1.27 16 45 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.34 12.24 8.06 -89.69 -0.72 11.52 16 47 H 0.11 3.39 7.42 -2.39 -0.02 3.37 16 48 H 0.06 1.94 8.06 -2.38 -0.02 1.92 16 49 H 0.40 19.75 7.90 -92.71 -0.73 19.01 16 50 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 51 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 52 H 0.07 1.93 7.00 -2.39 -0.02 1.91 16 Total: -1.00 -74.87 413.38 1.33 -73.54 By element: Atomic # 1 Polarization: 42.63 SS G_CDS: -0.55 Total: 42.08 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 6.66 Total: 11.81 kcal Atomic # 7 Polarization: -113.54 SS G_CDS: -6.71 Total: -120.25 kcal Atomic # 8 Polarization: -52.58 SS G_CDS: -0.09 Total: -52.67 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -74.87 1.33 -73.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209182186.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.074 kcal (2) G-P(sol) polarization free energy of solvation -74.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds