Wall clock time and date at job start Tue Mar 31 2020 20:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 120.00176 * 2 1 4 4 H 1.08996 * 109.47002 * 0.02562 * 3 2 1 5 5 C 1.53001 * 109.46848 * 239.99825 * 3 2 1 6 6 C 1.53000 * 109.47265 * 65.00554 * 5 3 2 7 7 C 1.53005 * 109.47188 * 120.00227 * 3 2 1 8 8 C 1.50697 * 109.46937 * 294.99922 * 7 3 2 9 9 O 1.21284 * 120.00267 * 0.02562 * 8 7 3 10 10 N 1.34774 * 120.00224 * 180.02562 * 8 7 3 11 11 C 1.46931 * 120.62995 * 359.97438 * 10 8 7 12 12 C 1.53186 * 108.77629 * 126.41081 * 11 10 8 13 13 C 1.53051 * 109.31180 * 54.63793 * 12 11 10 14 14 C 1.53037 * 109.53521 * 298.63199 * 13 12 11 15 15 H 1.08997 * 109.52646 * 301.39800 * 14 13 12 16 16 N 1.46895 * 109.49533 * 181.31362 * 14 13 12 17 17 C 1.46906 * 110.99789 * 85.16237 * 16 14 13 18 18 C 1.50703 * 109.47109 * 179.97438 * 17 16 14 19 19 O 1.21296 * 119.99996 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99978 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99848 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00405 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99358 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00464 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99431 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47151 * 90.00176 * 25 23 21 27 27 H 1.48498 * 109.47184 * 210.00131 * 25 23 21 28 28 H 1.48501 * 109.47470 * 330.00337 * 25 23 21 29 29 C 1.46924 * 120.63474 * 179.97438 * 10 8 7 30 30 H 1.07998 * 119.99595 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.00340 * 179.97438 * 1 2 3 32 32 H 1.08002 * 120.00069 * 179.97438 * 2 1 3 33 33 H 1.09003 * 109.46928 * 185.00005 * 5 3 2 34 34 H 1.08998 * 109.47777 * 304.99867 * 5 3 2 35 35 H 1.09000 * 109.47483 * 179.97438 * 6 5 3 36 36 H 1.09003 * 109.46699 * 299.99591 * 6 5 3 37 37 H 1.08998 * 109.47284 * 59.99011 * 6 5 3 38 38 H 1.08998 * 109.47205 * 175.00167 * 7 3 2 39 39 H 1.09003 * 109.47206 * 54.99747 * 7 3 2 40 40 H 1.09002 * 109.58684 * 246.20643 * 11 10 8 41 41 H 1.09000 * 109.58235 * 6.47940 * 11 10 8 42 42 H 1.09006 * 109.49906 * 174.58468 * 12 11 10 43 43 H 1.09000 * 109.50159 * 294.65440 * 12 11 10 44 44 H 1.08999 * 109.45727 * 178.60902 * 13 12 11 45 45 H 1.08997 * 109.45624 * 58.65052 * 13 12 11 46 46 H 1.00902 * 111.00273 * 209.11760 * 16 14 13 47 47 H 1.08992 * 109.47459 * 299.99826 * 17 16 14 48 48 H 1.09004 * 109.47040 * 59.99976 * 17 16 14 49 49 H 0.97002 * 119.99767 * 359.97438 * 20 18 17 50 50 H 0.96997 * 119.99770 * 179.97438 * 24 23 21 51 51 H 1.09004 * 109.58622 * 113.79701 * 29 10 8 52 52 H 1.09000 * 109.70398 * 353.44739 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1335 0.0005 5 6 2.9432 1.3860 -1.2492 6 6 2.0565 1.4307 -2.4953 7 6 2.9432 1.3861 1.2492 8 6 2.0699 1.4300 2.4766 9 8 0.8627 1.3990 2.3633 10 7 2.6302 1.5037 3.7001 11 6 4.0910 1.5414 3.8535 12 6 4.4665 2.7611 4.7007 13 6 3.6966 2.7154 6.0228 14 6 2.1932 2.7670 5.7416 15 1 1.9564 3.6782 5.1922 16 7 1.4561 2.7548 7.0121 17 6 1.3320 4.1115 7.5617 18 6 0.5714 4.0593 8.8617 19 8 0.1724 2.9963 9.2886 20 7 0.3346 5.1936 9.5499 21 6 -0.3569 5.1459 10.7328 22 1 -0.7122 4.1996 11.1130 23 6 -0.6006 6.3154 11.4426 24 7 -0.1679 7.4669 10.9803 25 14 -1.5434 6.2506 13.0539 26 1 -0.5909 6.0613 14.1774 27 1 -2.2867 7.5220 13.2440 28 1 -2.5020 5.1169 13.0214 29 6 1.7920 1.5478 4.9060 30 1 -0.5399 0.9353 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 3.5541 2.2877 -1.2056 34 1 3.5906 0.5104 -1.2952 35 1 2.6831 1.4888 -3.3853 36 1 1.4456 0.5290 -2.5390 37 1 1.4090 2.3063 -2.4494 38 1 3.5541 2.2877 1.2056 39 1 3.5906 0.5104 1.2952 40 1 4.4298 0.6326 4.3508 41 1 4.5595 1.6172 2.8722 42 1 5.5375 2.7480 4.9029 43 1 4.2093 3.6724 4.1608 44 1 3.9806 3.5693 6.6380 45 1 3.9359 1.7923 6.5505 46 1 0.5498 2.3256 6.9003 47 1 2.3252 4.5245 7.7379 48 1 0.7964 4.7431 6.8529 49 1 0.6540 6.0436 9.2087 50 1 -0.3384 8.2833 11.4756 51 1 1.9429 0.6395 5.4894 52 1 0.7429 1.6291 4.6215 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209182187.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:57 Heat of formation + Delta-G solvation = -66.386529 kcal Electronic energy + Delta-G solvation = -29199.564813 eV Core-core repulsion = 25198.753959 eV Total energy + Delta-G solvation = -4000.810854 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.54184 -38.60967 -37.89565 -36.73579 -35.11742 -33.84601 -32.39539 -31.98486 -31.31144 -31.07491 -29.66349 -26.35975 -26.05008 -24.55801 -23.69740 -22.68462 -21.95529 -20.55272 -19.90452 -19.33459 -18.92074 -17.87796 -17.32032 -16.38174 -16.08912 -15.80077 -15.31910 -15.06956 -14.99515 -14.69511 -14.52605 -14.29826 -14.16016 -14.00001 -13.83610 -13.52512 -13.48547 -13.17212 -12.93690 -12.55696 -12.43560 -12.27042 -12.12965 -11.87283 -11.62442 -11.53050 -11.50413 -11.41556 -11.19567 -11.07570 -11.02973 -10.85052 -10.77190 -10.72627 -10.38560 -10.20999 -9.97249 -9.49986 -9.30268 -8.80418 -8.45076 -8.08929 -7.95126 -6.40803 -3.81564 2.25974 2.50518 2.74226 3.18802 3.27299 3.33441 3.91732 4.08777 4.18748 4.29532 4.43368 4.47909 4.61918 4.70637 4.76080 4.87896 4.90796 4.94099 5.04959 5.09206 5.12685 5.13853 5.21461 5.26156 5.26424 5.36737 5.44955 5.52613 5.55273 5.58153 5.63960 5.68115 5.73606 5.79270 5.81093 5.89646 5.91023 5.97071 5.99600 6.06052 6.18489 6.28541 6.33612 6.55931 6.75519 7.17816 7.25111 7.56215 7.63327 8.04138 8.07274 8.62208 9.18820 9.55204 10.06683 10.76966 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021346 B = 0.001854 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.436570 B =15095.214188 C =15566.182693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.154 4.154 3 C -0.045 4.045 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.132 4.132 8 C 0.512 3.488 9 O -0.531 6.531 10 N -0.612 5.612 11 C 0.106 3.894 12 C -0.135 4.135 13 C -0.110 4.110 14 C 0.075 3.925 15 H 0.045 0.955 16 N -0.661 5.661 17 C 0.053 3.947 18 C 0.441 3.559 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.111 3.889 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.351 0.649 47 H 0.086 0.914 48 H 0.043 0.957 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.077 0.923 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.176 -10.039 -24.908 29.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.172 4.172 3 C -0.064 4.064 4 H 0.099 0.901 5 C -0.153 4.153 6 C -0.209 4.209 7 C -0.172 4.172 8 C 0.301 3.699 9 O -0.407 6.407 10 N -0.346 5.346 11 C -0.017 4.017 12 C -0.174 4.174 13 C -0.148 4.148 14 C -0.036 4.036 15 H 0.063 0.937 16 N -0.294 5.294 17 C -0.080 4.080 18 C 0.227 3.773 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.012 4.012 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.171 0.829 47 H 0.104 0.896 48 H 0.061 0.939 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.095 0.905 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.759 -10.737 -24.221 28.987 hybrid contribution -0.753 1.061 0.243 1.324 sum 11.006 -9.676 -23.978 28.102 Atomic orbital electron populations 1.23714 0.95942 1.01382 0.98800 1.22600 0.95979 0.96964 1.01695 1.20176 0.96591 0.97186 0.92436 0.90067 1.21537 0.97845 1.01901 0.94032 1.21759 0.99843 1.02207 0.97072 1.21744 0.98725 1.04082 0.92683 1.20685 0.89082 0.75916 0.84252 1.90718 1.14771 1.49117 1.86059 1.48095 1.07026 1.73576 1.05943 1.21789 0.79869 0.99037 1.00965 1.21943 1.00599 0.98031 0.96808 1.21549 0.93620 1.03433 0.96197 1.21823 0.95063 0.97020 0.89647 0.93746 1.60097 1.25049 1.19378 1.24920 1.21710 1.00699 0.89834 0.95778 1.19794 0.85550 0.85049 0.86955 1.90526 1.55965 1.29485 1.70682 1.41861 1.49625 1.07657 1.20907 1.19711 1.30467 0.95377 0.97312 0.87900 1.25266 0.98132 0.94673 0.99907 1.69613 1.46549 0.98277 1.39910 0.85850 0.79418 0.77647 0.81324 1.20393 1.20948 1.19425 1.21685 0.96125 0.98439 0.84912 0.88609 0.89205 0.88164 0.91833 0.91856 0.92907 0.92377 0.92772 0.88826 0.88923 0.91090 0.89805 0.90368 0.91594 0.91369 0.90855 0.82878 0.89627 0.93873 0.77478 0.91890 0.90506 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 13.22 29.02 0.38 -1.20 16 2 C -0.15 -1.36 6.76 -36.03 -0.24 -1.60 16 3 C -0.05 -0.35 1.82 -91.77 -0.17 -0.52 16 4 H 0.08 0.78 7.60 -51.93 -0.39 0.38 16 5 C -0.12 -0.67 5.39 -26.73 -0.14 -0.81 16 6 C -0.15 -0.91 9.73 37.16 0.36 -0.55 16 7 C -0.13 -0.94 3.51 -27.88 -0.10 -1.04 16 8 C 0.51 5.57 7.45 -10.99 -0.08 5.49 16 9 O -0.53 -7.69 13.58 5.55 0.08 -7.62 16 10 N -0.61 -6.15 2.97 -172.79 -0.51 -6.66 16 11 C 0.11 0.74 6.34 -3.71 -0.02 0.72 16 12 C -0.14 -1.03 6.08 -26.61 -0.16 -1.19 16 13 C -0.11 -1.18 5.40 -26.69 -0.14 -1.33 16 14 C 0.08 0.96 2.64 -67.62 -0.18 0.78 16 15 H 0.04 0.60 7.80 -51.93 -0.41 0.19 16 16 N -0.66 -10.78 5.94 -107.89 -0.64 -11.42 16 17 C 0.05 0.94 5.97 -4.97 -0.03 0.91 16 18 C 0.44 10.56 7.82 -10.98 -0.09 10.48 16 19 O -0.58 -16.02 15.78 5.54 0.09 -15.93 16 20 N -0.56 -14.48 5.29 -10.96 -0.06 -14.54 16 21 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 25 Si 0.93 21.26 29.55 -169.99 -5.02 16.23 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 29 C 0.11 1.34 5.69 -3.73 -0.02 1.32 16 30 H 0.10 1.03 7.83 -52.49 -0.41 0.62 16 31 H 0.09 0.80 8.06 -52.49 -0.42 0.38 16 32 H 0.10 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.38 7.38 -51.93 -0.38 0.00 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 0.50 7.69 -51.93 -0.40 0.10 16 39 H 0.09 0.50 7.94 -51.93 -0.41 0.09 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.39 5.93 -51.93 -0.31 0.08 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.79 7.44 -51.93 -0.39 0.41 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.35 6.02 8.06 -39.29 -0.32 5.70 16 47 H 0.09 1.41 7.43 -51.93 -0.39 1.03 16 48 H 0.04 0.72 8.06 -51.93 -0.42 0.30 16 49 H 0.39 9.62 7.90 -40.82 -0.32 9.29 16 50 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 51 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 52 H 0.09 1.26 7.01 -51.93 -0.36 0.90 16 LS Contribution 413.40 15.07 6.23 6.23 Total: -1.00 -33.01 413.40 -9.06 -42.07 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -9.07 Total: 12.29 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -0.87 Total: 3.36 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.49 Total: -56.63 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: 0.16 Total: -23.55 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.01 -9.06 -42.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209182187.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.316 kcal (2) G-P(sol) polarization free energy of solvation -33.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds