Wall clock time and date at job start Tue Mar 31 2020 20:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 H 1.09005 * 109.46474 * 359.97438 * 3 2 1 5 5 C 1.52995 * 109.47451 * 119.99804 * 3 2 1 6 6 C 1.52997 * 109.46968 * 294.99909 * 5 3 2 7 7 C 1.52997 * 109.46768 * 240.00195 * 3 2 1 8 8 C 1.50699 * 109.47633 * 64.99549 * 7 3 2 9 9 O 1.21278 * 119.99655 * 0.02562 * 8 7 3 10 10 N 1.34775 * 120.00149 * 179.97438 * 8 7 3 11 11 C 1.46929 * 120.63323 * 0.02562 * 10 8 7 12 12 C 1.53188 * 108.77469 * 233.58332 * 11 10 8 13 13 C 1.53040 * 109.31409 * 305.36582 * 12 11 10 14 14 C 1.53034 * 109.54091 * 61.36403 * 13 12 11 15 15 H 1.09002 * 109.50004 * 58.58998 * 14 13 12 16 16 N 1.46897 * 109.50056 * 178.65260 * 14 13 12 17 17 C 1.46896 * 111.00417 * 275.00199 * 16 14 13 18 18 C 1.50696 * 109.47643 * 179.97438 * 17 16 14 19 19 O 1.21288 * 119.99546 * 0.02562 * 18 17 16 20 20 N 1.34771 * 120.00090 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00038 * 179.97438 * 20 18 17 22 22 H 1.07994 * 119.99770 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99699 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00603 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99561 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47373 * 90.00058 * 25 23 21 27 27 H 1.48505 * 109.47018 * 210.00096 * 25 23 21 28 28 H 1.48506 * 109.46928 * 329.99578 * 25 23 21 29 29 C 1.46930 * 120.63145 * 179.72008 * 10 8 7 30 30 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 31 31 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 32 32 H 1.07998 * 120.00195 * 179.97438 * 2 1 3 33 33 H 1.09003 * 109.47017 * 55.00198 * 5 3 2 34 34 H 1.09000 * 109.46921 * 175.00195 * 5 3 2 35 35 H 1.08994 * 109.47369 * 299.99808 * 6 5 3 36 36 H 1.09000 * 109.47066 * 60.00375 * 6 5 3 37 37 H 1.09000 * 109.47271 * 179.97438 * 6 5 3 38 38 H 1.09003 * 109.47108 * 184.99796 * 7 3 2 39 39 H 1.09007 * 109.47139 * 304.99362 * 7 3 2 40 40 H 1.09004 * 109.57994 * 353.36652 * 11 10 8 41 41 H 1.08995 * 109.58695 * 113.79130 * 11 10 8 42 42 H 1.09012 * 109.49760 * 65.31209 * 12 11 10 43 43 H 1.08998 * 109.49595 * 185.37390 * 12 11 10 44 44 H 1.09005 * 109.45802 * 181.38913 * 13 12 11 45 45 H 1.09003 * 109.45775 * 301.34260 * 13 12 11 46 46 H 1.00894 * 111.00318 * 151.04029 * 16 14 13 47 47 H 1.09004 * 109.47086 * 299.99971 * 17 16 14 48 48 H 1.09001 * 109.46949 * 59.99318 * 17 16 14 49 49 H 0.97001 * 120.00185 * 0.02562 * 20 18 17 50 50 H 0.97001 * 120.00134 * 179.97438 * 24 23 21 51 51 H 1.08997 * 109.58539 * 246.20420 * 29 10 8 52 52 H 1.09007 * 109.58360 * 6.62672 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3862 1.2492 6 6 2.0564 1.4309 2.4952 7 6 2.9431 1.3861 -1.2493 8 6 2.0698 1.4299 -2.4766 9 8 0.8627 1.3998 -2.3633 10 7 2.6301 1.5035 -3.7002 11 6 4.0909 1.5412 -3.8535 12 6 4.4663 2.7608 -4.7011 13 6 3.6965 2.7150 -6.0229 14 6 2.1931 2.7665 -5.7418 15 1 1.9567 3.6777 -5.1924 16 7 1.4559 2.7550 -7.0124 17 6 1.3352 4.1113 -7.5633 18 6 0.5756 4.0596 -8.8638 19 8 0.1738 2.9973 -9.2895 20 7 0.3417 5.1937 -9.5533 21 6 -0.3489 5.1466 -10.7367 22 1 -0.7059 4.2006 -11.1162 23 6 -0.5895 6.3158 -11.4477 24 7 -0.1547 7.4668 -10.9862 25 14 -1.5311 6.2516 -13.0598 26 1 -2.9830 6.4100 -12.7917 27 1 -1.0689 7.3491 -13.9470 28 1 -1.2897 4.9446 -13.7223 29 6 1.7920 1.5408 -4.9064 30 1 -0.5401 -0.9353 0.0004 31 1 -0.5400 0.9354 0.0044 32 1 1.8500 -0.9353 0.0004 33 1 3.5906 0.5105 1.2951 34 1 3.5540 2.2879 1.2055 35 1 1.4090 2.3065 2.4493 36 1 1.4455 0.5292 2.5389 37 1 2.6830 1.4882 3.3853 38 1 3.5540 2.2877 -1.2057 39 1 3.5906 0.5103 -1.2951 40 1 4.5593 1.6198 -2.8724 41 1 4.4297 0.6324 -4.3508 42 1 4.2085 3.6722 -4.1614 43 1 5.5374 2.7480 -4.9025 44 1 3.9804 3.5688 -6.6383 45 1 3.9358 1.7918 -6.5507 46 1 0.5486 2.3281 -6.9002 47 1 0.8011 4.7449 -6.8552 48 1 2.3295 4.5216 -7.7398 49 1 0.6627 6.0433 -9.2126 50 1 -0.3223 8.2830 -11.4828 51 1 1.9476 0.6319 -5.4876 52 1 0.7431 1.6190 -4.6202 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209182188.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:00 Heat of formation + Delta-G solvation = -66.442636 kcal Electronic energy + Delta-G solvation = -29198.071779 eV Core-core repulsion = 25197.258492 eV Total energy + Delta-G solvation = -4000.813287 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.53604 -38.60210 -37.89231 -36.73498 -35.11306 -33.84538 -32.39499 -31.98552 -31.30738 -31.07261 -29.65034 -26.35968 -26.04881 -24.55188 -23.69710 -22.68300 -21.95488 -20.54742 -19.90493 -19.33240 -18.92211 -17.87753 -17.31886 -16.37827 -16.08783 -15.80056 -15.31815 -15.06796 -14.99127 -14.69655 -14.52552 -14.29755 -14.15839 -14.00020 -13.83307 -13.52452 -13.48582 -13.17101 -12.93674 -12.55273 -12.43397 -12.27164 -12.12984 -11.87264 -11.62400 -11.52881 -11.50449 -11.41933 -11.19440 -11.07618 -11.02758 -10.84954 -10.77164 -10.72634 -10.38445 -10.20971 -9.97238 -9.49978 -9.30248 -8.80307 -8.45001 -8.08685 -7.95095 -6.40735 -3.81538 2.25985 2.50620 2.74421 3.18818 3.27313 3.33481 3.91847 4.08897 4.18786 4.29697 4.43341 4.47962 4.61570 4.70810 4.76319 4.87597 4.90737 4.94024 5.04943 5.09268 5.12655 5.13874 5.21303 5.26156 5.26326 5.36811 5.45051 5.52615 5.55270 5.58170 5.63893 5.68207 5.73759 5.79176 5.81040 5.89647 5.91005 5.97094 5.99562 6.05988 6.18669 6.28521 6.33728 6.55861 6.75479 7.17969 7.25244 7.56254 7.63585 8.04193 8.07362 8.62252 9.18875 9.55276 10.06742 10.77022 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021374 B = 0.001854 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.692985 B =15100.760764 C =15569.605823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.154 4.154 3 C -0.045 4.045 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.132 4.132 8 C 0.512 3.488 9 O -0.531 6.531 10 N -0.612 5.612 11 C 0.106 3.894 12 C -0.135 4.135 13 C -0.110 4.110 14 C 0.076 3.924 15 H 0.045 0.955 16 N -0.662 5.662 17 C 0.052 3.948 18 C 0.441 3.559 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 C 0.112 3.888 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.351 0.649 47 H 0.043 0.957 48 H 0.085 0.915 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.077 0.923 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.169 -10.060 24.911 29.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.172 4.172 3 C -0.064 4.064 4 H 0.099 0.901 5 C -0.153 4.153 6 C -0.209 4.209 7 C -0.172 4.172 8 C 0.301 3.699 9 O -0.407 6.407 10 N -0.347 5.347 11 C -0.017 4.017 12 C -0.174 4.174 13 C -0.148 4.148 14 C -0.035 4.035 15 H 0.063 0.937 16 N -0.295 5.295 17 C -0.080 4.080 18 C 0.227 3.773 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.011 4.011 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.171 0.829 47 H 0.061 0.939 48 H 0.104 0.896 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.095 0.905 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.760 -10.758 24.220 28.994 hybrid contribution -0.768 1.064 -0.231 1.333 sum 10.992 -9.693 23.989 28.111 Atomic orbital electron populations 1.23713 0.95939 1.01376 0.98798 1.22600 0.95978 0.96965 1.01700 1.20176 0.96593 0.97184 0.92438 0.90067 1.21536 0.97846 1.01900 0.94032 1.21758 0.99843 1.02206 0.97073 1.21744 0.98725 1.04080 0.92687 1.20683 0.89081 0.75912 0.84260 1.90717 1.14773 1.49118 1.86056 1.48105 1.07042 1.73589 1.05945 1.21791 0.79876 0.99033 1.00958 1.21944 1.00588 0.98038 0.96813 1.21549 0.93637 1.03426 0.96200 1.21921 0.95032 0.96953 0.89625 0.93726 1.60086 1.24972 1.19495 1.24915 1.21708 1.00716 0.89837 0.95766 1.19788 0.85557 0.85045 0.86945 1.90523 1.55859 1.29525 1.70746 1.41861 1.49638 1.07688 1.20871 1.19710 1.30484 0.95410 0.97264 0.87902 1.25264 0.98108 0.94680 0.99922 1.69612 1.46445 0.98309 1.39987 0.85852 0.79335 0.78026 0.81038 1.20431 1.20930 1.19398 1.21798 0.96123 0.98360 0.84855 0.89205 0.88616 0.88165 0.91857 0.91831 0.92766 0.92383 0.92909 0.88828 0.88927 0.89807 0.91079 0.91600 0.90372 0.91377 0.90861 0.82879 0.93873 0.89638 0.77479 0.91890 0.90468 0.89051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 13.22 29.02 0.38 -1.20 16 2 C -0.15 -1.36 6.76 -36.02 -0.24 -1.60 16 3 C -0.05 -0.35 1.82 -91.77 -0.17 -0.52 16 4 H 0.08 0.78 7.60 -51.93 -0.39 0.38 16 5 C -0.12 -0.67 5.39 -26.74 -0.14 -0.81 16 6 C -0.15 -0.91 9.73 37.16 0.36 -0.55 16 7 C -0.13 -0.94 3.51 -27.89 -0.10 -1.04 16 8 C 0.51 5.57 7.45 -10.99 -0.08 5.48 16 9 O -0.53 -7.69 13.58 5.56 0.08 -7.61 16 10 N -0.61 -6.14 2.97 -172.48 -0.51 -6.66 16 11 C 0.11 0.74 6.34 -3.71 -0.02 0.72 16 12 C -0.14 -1.03 6.08 -26.61 -0.16 -1.19 16 13 C -0.11 -1.19 5.39 -26.69 -0.14 -1.33 16 14 C 0.08 0.96 2.66 -67.35 -0.18 0.78 16 15 H 0.04 0.60 7.80 -51.93 -0.41 0.19 16 16 N -0.66 -10.79 5.93 -107.61 -0.64 -11.43 16 17 C 0.05 0.94 5.97 -4.98 -0.03 0.91 16 18 C 0.44 10.57 7.82 -10.99 -0.09 10.48 16 19 O -0.58 -16.02 15.78 5.55 0.09 -15.93 16 20 N -0.56 -14.48 5.29 -10.97 -0.06 -14.54 16 21 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 25 Si 0.93 21.26 29.55 -169.99 -5.02 16.23 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 29 C 0.11 1.34 5.73 -3.47 -0.02 1.32 16 30 H 0.09 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.10 1.02 7.83 -52.48 -0.41 0.61 16 32 H 0.10 0.79 8.06 -52.49 -0.42 0.36 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.38 7.38 -51.93 -0.38 0.00 16 37 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.09 0.50 7.69 -51.93 -0.40 0.10 16 39 H 0.09 0.50 7.94 -51.93 -0.41 0.09 16 40 H 0.08 0.39 5.93 -51.93 -0.31 0.08 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.79 7.43 -51.93 -0.39 0.41 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.35 6.02 8.07 -39.30 -0.32 5.70 16 47 H 0.04 0.72 8.06 -51.93 -0.42 0.30 16 48 H 0.09 1.41 7.42 -51.93 -0.39 1.03 16 49 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 50 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 51 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 52 H 0.09 1.26 7.00 -51.93 -0.36 0.90 16 LS Contribution 413.41 15.07 6.23 6.23 Total: -1.00 -33.01 413.41 -9.05 -42.07 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -9.07 Total: 12.29 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -0.87 Total: 3.36 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -0.48 Total: -56.64 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: 0.16 Total: -23.54 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.01 -9.05 -42.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209182188.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.376 kcal (2) G-P(sol) polarization free energy of solvation -33.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds