Wall clock time and date at job start Tue Mar 31 2020 20:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 H 1.09005 * 109.46474 * 359.97438 * 3 2 1 5 5 C 1.52995 * 109.47451 * 119.99804 * 3 2 1 6 6 C 1.52997 * 109.46968 * 294.99909 * 5 3 2 7 7 C 1.52997 * 109.46768 * 240.00195 * 3 2 1 8 8 C 1.50699 * 109.47633 * 64.99549 * 7 3 2 9 9 O 1.21278 * 119.99655 * 0.02562 * 8 7 3 10 10 N 1.34775 * 120.00149 * 179.97438 * 8 7 3 11 11 C 1.46929 * 120.63323 * 0.02562 * 10 8 7 12 12 C 1.53188 * 108.77469 * 233.58332 * 11 10 8 13 13 C 1.53040 * 109.31409 * 305.36582 * 12 11 10 14 14 C 1.53034 * 109.54091 * 61.36403 * 13 12 11 15 15 H 1.09002 * 109.50004 * 58.58998 * 14 13 12 16 16 N 1.46897 * 109.50056 * 178.65260 * 14 13 12 17 17 C 1.46896 * 111.00417 * 275.00199 * 16 14 13 18 18 C 1.50696 * 109.47643 * 179.97438 * 17 16 14 19 19 O 1.21288 * 119.99546 * 0.02562 * 18 17 16 20 20 N 1.34771 * 120.00090 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00038 * 179.97438 * 20 18 17 22 22 H 1.07994 * 119.99770 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99699 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00603 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99561 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47373 * 90.00058 * 25 23 21 27 27 H 1.48505 * 109.47018 * 210.00096 * 25 23 21 28 28 H 1.48506 * 109.46928 * 329.99578 * 25 23 21 29 29 C 1.46930 * 120.63145 * 179.72008 * 10 8 7 30 30 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 31 31 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 32 32 H 1.07998 * 120.00195 * 179.97438 * 2 1 3 33 33 H 1.09003 * 109.47017 * 55.00198 * 5 3 2 34 34 H 1.09000 * 109.46921 * 175.00195 * 5 3 2 35 35 H 1.08994 * 109.47369 * 299.99808 * 6 5 3 36 36 H 1.09000 * 109.47066 * 60.00375 * 6 5 3 37 37 H 1.09000 * 109.47271 * 179.97438 * 6 5 3 38 38 H 1.09003 * 109.47108 * 184.99796 * 7 3 2 39 39 H 1.09007 * 109.47139 * 304.99362 * 7 3 2 40 40 H 1.09004 * 109.57994 * 353.36652 * 11 10 8 41 41 H 1.08995 * 109.58695 * 113.79130 * 11 10 8 42 42 H 1.09012 * 109.49760 * 65.31209 * 12 11 10 43 43 H 1.08998 * 109.49595 * 185.37390 * 12 11 10 44 44 H 1.09005 * 109.45802 * 181.38913 * 13 12 11 45 45 H 1.09003 * 109.45775 * 301.34260 * 13 12 11 46 46 H 1.00894 * 111.00318 * 151.04029 * 16 14 13 47 47 H 1.09004 * 109.47086 * 299.99971 * 17 16 14 48 48 H 1.09001 * 109.46949 * 59.99318 * 17 16 14 49 49 H 0.97001 * 120.00185 * 0.02562 * 20 18 17 50 50 H 0.97001 * 120.00134 * 179.97438 * 24 23 21 51 51 H 1.08997 * 109.58539 * 246.20420 * 29 10 8 52 52 H 1.09007 * 109.58360 * 6.62672 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3862 1.2492 6 6 2.0564 1.4309 2.4952 7 6 2.9431 1.3861 -1.2493 8 6 2.0698 1.4299 -2.4766 9 8 0.8627 1.3998 -2.3633 10 7 2.6301 1.5035 -3.7002 11 6 4.0909 1.5412 -3.8535 12 6 4.4663 2.7608 -4.7011 13 6 3.6965 2.7150 -6.0229 14 6 2.1931 2.7665 -5.7418 15 1 1.9567 3.6777 -5.1924 16 7 1.4559 2.7550 -7.0124 17 6 1.3352 4.1113 -7.5633 18 6 0.5756 4.0596 -8.8638 19 8 0.1738 2.9973 -9.2895 20 7 0.3417 5.1937 -9.5533 21 6 -0.3489 5.1466 -10.7367 22 1 -0.7059 4.2006 -11.1162 23 6 -0.5895 6.3158 -11.4477 24 7 -0.1547 7.4668 -10.9862 25 14 -1.5311 6.2516 -13.0598 26 1 -2.9830 6.4100 -12.7917 27 1 -1.0689 7.3491 -13.9470 28 1 -1.2897 4.9446 -13.7223 29 6 1.7920 1.5408 -4.9064 30 1 -0.5401 -0.9353 0.0004 31 1 -0.5400 0.9354 0.0044 32 1 1.8500 -0.9353 0.0004 33 1 3.5906 0.5105 1.2951 34 1 3.5540 2.2879 1.2055 35 1 1.4090 2.3065 2.4493 36 1 1.4455 0.5292 2.5389 37 1 2.6830 1.4882 3.3853 38 1 3.5540 2.2877 -1.2057 39 1 3.5906 0.5103 -1.2951 40 1 4.5593 1.6198 -2.8724 41 1 4.4297 0.6324 -4.3508 42 1 4.2085 3.6722 -4.1614 43 1 5.5374 2.7480 -4.9025 44 1 3.9804 3.5688 -6.6383 45 1 3.9358 1.7918 -6.5507 46 1 0.5486 2.3281 -6.9002 47 1 0.8011 4.7449 -6.8552 48 1 2.3295 4.5216 -7.7398 49 1 0.6627 6.0433 -9.2126 50 1 -0.3223 8.2830 -11.4828 51 1 1.9476 0.6319 -5.4876 52 1 0.7431 1.6190 -4.6202 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209182188.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:59 Heat of formation + Delta-G solvation = -88.758414 kcal Electronic energy + Delta-G solvation = -29199.039464 eV Core-core repulsion = 25197.258492 eV Total energy + Delta-G solvation = -4001.780972 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.35792 -40.22655 -39.03021 -37.47419 -36.37633 -35.77397 -33.35362 -33.18981 -32.59198 -31.95663 -30.58805 -27.95118 -26.79946 -25.97314 -24.74915 -23.51283 -22.52133 -21.46680 -21.16895 -20.56783 -19.97528 -19.69463 -18.19750 -17.80051 -17.12989 -16.79840 -16.57239 -16.46448 -16.10031 -15.72278 -15.59308 -15.42691 -15.27283 -15.07868 -14.84290 -14.63890 -14.30383 -14.19654 -13.83162 -13.71703 -13.57240 -13.41692 -13.27448 -12.99431 -12.91458 -12.82628 -12.44148 -12.38030 -12.16108 -12.12539 -12.03577 -11.83600 -11.81868 -11.62910 -11.62285 -11.52896 -11.34511 -10.78614 -10.38611 -10.04462 -10.02601 -9.65517 -9.40935 -8.48754 -5.97902 1.36714 1.40599 1.53578 1.54169 1.71502 1.95136 2.01573 2.28253 2.90708 3.17945 3.41328 3.55653 3.78643 3.84641 3.90396 3.96004 4.06652 4.11886 4.25190 4.28403 4.36197 4.39414 4.42164 4.46801 4.51495 4.53129 4.59259 4.66072 4.70050 4.77753 4.80551 4.88894 5.00066 5.02289 5.05796 5.08188 5.14038 5.20772 5.21679 5.37655 5.40010 5.41584 5.48265 5.50675 5.83637 5.85904 6.05666 6.06419 6.28344 6.47782 6.57078 7.09814 7.24855 7.52572 8.07776 8.68631 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021374 B = 0.001854 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.692985 B =15100.760764 C =15569.605823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.145 4.145 3 C -0.046 4.046 4 H 0.055 0.945 5 C -0.109 4.109 6 C -0.154 4.154 7 C -0.124 4.124 8 C 0.503 3.497 9 O -0.577 6.577 10 N -0.611 5.611 11 C 0.102 3.898 12 C -0.127 4.127 13 C -0.109 4.109 14 C 0.081 3.919 15 H 0.040 0.960 16 N -0.672 5.672 17 C 0.069 3.931 18 C 0.438 3.562 19 O -0.622 6.622 20 N -0.572 5.572 21 C -0.336 4.336 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.271 1.271 27 H -0.269 1.269 28 H -0.273 1.273 29 C 0.118 3.882 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.043 0.957 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.104 0.896 44 H 0.060 0.940 45 H 0.067 0.933 46 H 0.342 0.658 47 H 0.059 0.941 48 H 0.106 0.894 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.075 0.925 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.044 -9.903 26.034 31.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.163 4.163 3 C -0.065 4.065 4 H 0.074 0.926 5 C -0.146 4.146 6 C -0.211 4.211 7 C -0.164 4.164 8 C 0.293 3.707 9 O -0.456 6.456 10 N -0.344 5.344 11 C -0.019 4.019 12 C -0.166 4.166 13 C -0.147 4.147 14 C -0.029 4.029 15 H 0.058 0.942 16 N -0.305 5.305 17 C -0.064 4.064 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.209 5.209 21 C -0.465 4.465 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.560 5.560 25 Si 0.818 3.182 26 H -0.197 1.197 27 H -0.194 1.194 28 H -0.198 1.198 29 C -0.006 4.006 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.133 0.867 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.122 0.878 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.161 0.839 47 H 0.077 0.923 48 H 0.124 0.876 49 H 0.230 0.770 50 H 0.088 0.912 51 H 0.093 0.907 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.689 -10.578 25.368 31.164 hybrid contribution -1.655 0.996 -0.557 2.011 sum 13.034 -9.582 24.811 29.619 Atomic orbital electron populations 1.23683 0.96760 1.00707 1.01200 1.22871 0.95677 0.98216 0.99520 1.20181 0.96629 0.95522 0.94144 0.92643 1.21508 0.97461 1.03367 0.92276 1.21776 0.99967 1.01326 0.98056 1.21804 0.98166 1.06643 0.89746 1.21488 0.89020 0.74837 0.85348 1.90712 1.17042 1.51184 1.86711 1.48225 1.08305 1.72975 1.04936 1.22095 0.77696 0.99181 1.02971 1.21923 1.01504 0.98388 0.94763 1.21559 0.92176 1.02775 0.98201 1.21976 0.96002 0.96979 0.87931 0.94167 1.60150 1.24749 1.18387 1.27205 1.21542 1.00792 0.91294 0.92756 1.20803 0.84619 0.83869 0.88210 1.90490 1.57316 1.30872 1.72193 1.41923 1.49883 1.08406 1.20689 1.19682 1.32647 0.95115 0.99082 0.90302 1.26063 0.98391 0.93982 1.02829 1.69670 1.46525 0.98746 1.41096 0.84909 0.78179 0.78096 0.77026 1.19686 1.19359 1.19761 1.21533 0.95391 0.97888 0.85801 0.88921 0.90485 0.86653 0.90268 0.90326 0.93746 0.93309 0.91706 0.86083 0.86091 0.86323 0.90046 0.91558 0.87768 0.92173 0.91400 0.83900 0.92270 0.87616 0.76978 0.91235 0.90713 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.88 13.22 67.79 0.90 -2.98 16 2 C -0.14 -2.44 6.76 25.65 0.17 -2.27 16 3 C -0.05 -0.64 1.82 -11.54 -0.02 -0.66 16 4 H 0.06 1.07 7.60 -2.38 -0.02 1.05 16 5 C -0.11 -0.94 5.39 30.59 0.16 -0.78 16 6 C -0.15 -1.65 9.73 71.98 0.70 -0.95 16 7 C -0.12 -1.35 3.51 29.85 0.10 -1.24 16 8 C 0.50 10.26 7.45 87.66 0.65 10.91 16 9 O -0.58 -17.18 13.58 -3.02 -0.04 -17.22 16 10 N -0.61 -11.18 2.97 -817.99 -2.43 -13.61 16 11 C 0.10 1.02 6.34 86.36 0.55 1.57 16 12 C -0.13 -1.49 6.08 30.67 0.19 -1.30 16 13 C -0.11 -2.15 5.39 30.62 0.17 -1.98 16 14 C 0.08 2.03 2.66 45.15 0.12 2.15 16 15 H 0.04 1.05 7.80 -2.39 -0.02 1.03 16 16 N -0.67 -22.19 5.93 -494.38 -2.93 -25.12 16 17 C 0.07 2.46 5.97 85.56 0.51 2.97 16 18 C 0.44 21.46 7.82 87.66 0.69 22.14 16 19 O -0.62 -35.44 15.78 -3.05 -0.05 -35.48 16 20 N -0.57 -30.04 5.29 -307.00 -1.62 -31.66 16 21 C -0.34 -19.44 9.68 84.04 0.81 -18.63 16 22 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 23 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 24 N -0.92 -50.14 13.05 21.66 0.28 -49.85 16 25 Si 0.99 43.49 29.55 68.60 2.03 45.52 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 27 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 28 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 29 C 0.12 2.85 5.73 86.52 0.50 3.34 16 30 H 0.09 1.77 8.06 -2.91 -0.02 1.75 16 31 H 0.08 1.85 7.83 -2.91 -0.02 1.82 16 32 H 0.12 1.58 8.06 -2.91 -0.02 1.55 16 33 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.05 0.60 7.38 -2.39 -0.02 0.59 16 37 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.12 0.71 7.69 -2.39 -0.02 0.69 16 39 H 0.12 0.69 7.94 -2.38 -0.02 0.68 16 40 H 0.12 0.42 5.93 -2.38 -0.01 0.41 16 41 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 43 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.06 1.29 7.43 -2.38 -0.02 1.27 16 45 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.34 12.23 8.07 -89.70 -0.72 11.51 16 47 H 0.06 1.95 8.06 -2.38 -0.02 1.93 16 48 H 0.11 3.38 7.42 -2.39 -0.02 3.37 16 49 H 0.40 19.73 7.90 -92.71 -0.73 19.00 16 50 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 51 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 52 H 0.07 1.93 7.00 -2.38 -0.02 1.91 16 Total: -1.00 -75.00 413.41 1.35 -73.65 By element: Atomic # 1 Polarization: 42.27 SS G_CDS: -0.55 Total: 41.72 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 6.66 Total: 12.07 kcal Atomic # 7 Polarization: -113.55 SS G_CDS: -6.70 Total: -120.25 kcal Atomic # 8 Polarization: -52.62 SS G_CDS: -0.09 Total: -52.71 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -75.00 1.35 -73.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209182188.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.111 kcal (2) G-P(sol) polarization free energy of solvation -75.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds