Wall clock time and date at job start Tue Mar 31 2020 20:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00040 * 2 1 4 4 H 1.08993 * 109.47048 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.47186 * 239.99678 * 3 2 1 6 6 C 1.53006 * 109.46626 * 65.00419 * 5 3 2 7 7 C 1.53009 * 109.46877 * 119.99914 * 3 2 1 8 8 C 1.50699 * 109.47068 * 184.99850 * 7 3 2 9 9 O 1.21280 * 119.99619 * 0.02562 * 8 7 3 10 10 N 1.34768 * 120.00011 * 180.02562 * 8 7 3 11 11 C 1.47484 * 127.03507 * 0.02866 * 10 8 7 12 12 C 1.54008 * 107.08854 * 154.51419 * 11 10 8 13 13 H 1.09001 * 110.32786 * 120.29697 * 12 11 10 14 14 C 1.52995 * 110.32909 * 242.41445 * 12 11 10 15 15 C 1.54618 * 105.04120 * 1.30736 * 12 11 10 16 16 H 1.09004 * 110.74110 * 263.33111 * 15 12 11 17 17 N 1.46902 * 110.73971 * 140.18273 * 15 12 11 18 18 C 1.46902 * 110.99846 * 154.99684 * 17 15 12 19 19 C 1.50701 * 109.47017 * 180.02562 * 18 17 15 20 20 O 1.21291 * 119.99963 * 0.02562 * 19 18 17 21 21 N 1.34781 * 119.99715 * 179.97438 * 19 18 17 22 22 C 1.37094 * 119.99641 * 180.02562 * 21 19 18 23 23 H 1.08006 * 120.00257 * 0.02562 * 22 21 19 24 24 C 1.38955 * 120.00029 * 180.02562 * 22 21 19 25 25 N 1.31409 * 119.99381 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00055 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47063 * 89.99906 * 26 24 22 28 28 H 1.48502 * 109.47364 * 210.00027 * 26 24 22 29 29 H 1.48506 * 109.47340 * 329.99869 * 26 24 22 30 30 C 1.48123 * 127.03588 * 179.71166 * 10 8 7 31 31 H 1.07997 * 119.99971 * 359.97438 * 1 2 3 32 32 H 1.08001 * 120.00458 * 179.97438 * 1 2 3 33 33 H 1.08006 * 119.99711 * 180.02562 * 2 1 3 34 34 H 1.08993 * 109.47839 * 305.00488 * 5 3 2 35 35 H 1.09000 * 109.47160 * 185.00050 * 5 3 2 36 36 H 1.09001 * 109.46801 * 59.99811 * 6 5 3 37 37 H 1.09001 * 109.46998 * 179.97438 * 6 5 3 38 38 H 1.09000 * 109.47050 * 299.99699 * 6 5 3 39 39 H 1.08997 * 109.47185 * 305.00471 * 7 3 2 40 40 H 1.09010 * 109.46590 * 65.00172 * 7 3 2 41 41 H 1.09001 * 109.91463 * 273.87940 * 11 10 8 42 42 H 1.09002 * 109.91571 * 34.96434 * 11 10 8 43 43 H 1.09011 * 109.47187 * 58.54312 * 14 12 11 44 44 H 1.08995 * 109.47419 * 178.54300 * 14 12 11 45 45 H 1.08997 * 109.47305 * 298.54811 * 14 12 11 46 46 H 1.00891 * 111.00071 * 278.95360 * 17 15 12 47 47 H 1.08999 * 109.47272 * 300.00484 * 18 17 15 48 48 H 1.09007 * 109.46880 * 60.00423 * 18 17 15 49 49 H 0.97001 * 119.99959 * 0.02562 * 21 19 18 50 50 H 0.97002 * 119.99575 * 179.97438 * 25 24 22 51 51 H 1.09002 * 110.65687 * 337.76915 * 30 10 8 52 52 H 1.08994 * 110.66464 * 100.88523 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1335 0.0005 5 6 2.9431 1.3861 -1.2492 6 6 2.0564 1.4308 -2.4953 7 6 2.9431 1.3861 1.2493 8 6 3.6020 2.7399 1.3128 9 8 3.3886 3.5594 0.4446 10 7 4.4283 3.0399 2.3344 11 6 4.7957 2.1675 3.4653 12 6 6.1705 2.6402 3.9735 13 1 6.1039 2.9448 5.0179 14 6 7.2086 1.5283 3.8102 15 6 6.5340 3.8496 3.0812 16 1 7.1829 3.5429 2.2609 17 7 7.1686 4.9100 3.8755 18 6 8.0254 5.7565 3.0345 19 6 8.6582 6.8299 3.8821 20 8 8.4193 6.8840 5.0700 21 7 9.4903 7.7290 3.3203 22 6 10.0664 8.7051 4.0915 23 1 9.8538 8.7534 5.1493 24 6 10.9240 9.6325 3.5123 25 7 11.1831 9.5734 2.2253 26 14 11.7083 10.9629 4.5629 27 1 13.0030 10.4713 5.0989 28 1 11.9429 12.1734 3.7352 29 1 10.8027 11.3019 5.6900 30 6 5.1583 4.3110 2.5476 31 1 -0.5400 0.9353 0.0004 32 1 -0.5401 -0.9353 -0.0004 33 1 1.8499 -0.9354 -0.0004 34 1 3.5905 0.5105 -1.2952 35 1 3.5540 2.2878 -1.2055 36 1 1.4090 2.3065 -2.4492 37 1 2.6830 1.4889 -3.3852 38 1 1.4455 0.5291 -2.5389 39 1 2.3278 1.2394 2.1370 40 1 3.7085 0.6111 1.2056 41 1 4.0550 2.2579 4.2599 42 1 4.8565 1.1318 3.1308 43 1 7.2730 1.2426 2.7602 44 1 8.1807 1.8860 4.1497 45 1 6.9118 0.6640 4.4043 46 1 6.4767 5.4629 4.3588 47 1 8.8055 5.1458 2.5799 48 1 7.4235 6.2187 2.2519 49 1 9.6816 7.6854 2.3703 50 1 11.7814 10.2209 1.8209 51 1 5.2727 4.8511 1.6077 52 1 4.6484 4.9280 3.2873 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215376702.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:20 Heat of formation + Delta-G solvation = -63.795275 kcal Electronic energy + Delta-G solvation = -29115.770230 eV Core-core repulsion = 25115.071741 eV Total energy + Delta-G solvation = -4000.698489 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.52179 -38.83081 -38.01719 -36.77477 -34.75573 -33.80562 -32.58759 -32.08567 -31.23569 -30.92627 -28.86010 -26.64629 -26.34205 -24.77810 -23.84731 -22.46274 -21.98449 -20.50939 -20.00092 -19.41565 -19.12993 -17.90343 -17.26829 -16.59975 -16.12700 -15.68293 -15.40800 -15.24218 -14.89382 -14.68129 -14.51117 -14.16308 -14.01136 -13.80168 -13.72081 -13.42105 -13.29652 -13.19702 -12.91220 -12.79397 -12.35454 -12.21078 -12.17147 -12.08472 -11.66874 -11.53584 -11.48707 -11.41965 -11.20834 -11.13196 -11.02496 -10.99938 -10.86882 -10.80828 -10.39801 -10.22347 -9.90235 -9.67473 -9.51756 -8.95393 -8.47814 -8.09929 -7.96970 -6.42271 -3.83200 1.91175 2.43996 2.72392 3.17684 3.26459 3.32165 3.89141 3.99886 4.16315 4.26805 4.40528 4.42475 4.55734 4.66687 4.73596 4.84301 4.91437 5.01700 5.04329 5.07732 5.12137 5.15763 5.20882 5.25253 5.29086 5.38519 5.43134 5.50765 5.58115 5.62125 5.64234 5.68642 5.70251 5.73167 5.81403 5.87567 5.93086 5.97469 6.06885 6.08928 6.13187 6.17249 6.28058 6.29759 6.44880 7.14246 7.33673 7.54644 7.55665 7.97270 8.05197 8.60036 9.16984 9.53248 10.04284 10.75375 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019766 B = 0.001906 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.208832 B =14687.357264 C =15552.622682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C -0.046 4.046 4 H 0.082 0.918 5 C -0.122 4.122 6 C -0.148 4.148 7 C -0.128 4.128 8 C 0.531 3.469 9 O -0.537 6.537 10 N -0.619 5.619 11 C 0.102 3.898 12 C -0.096 4.096 13 H 0.096 0.904 14 C -0.139 4.139 15 C 0.080 3.920 16 H 0.091 0.909 17 N -0.652 5.652 18 C 0.049 3.951 19 C 0.440 3.560 20 O -0.584 6.584 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.931 3.069 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 C 0.073 3.927 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.051 0.949 44 H 0.067 0.933 45 H 0.055 0.945 46 H 0.352 0.648 47 H 0.087 0.913 48 H 0.045 0.955 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.084 0.916 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.101 -21.702 -4.891 28.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.163 4.163 3 C -0.065 4.065 4 H 0.100 0.900 5 C -0.160 4.160 6 C -0.205 4.205 7 C -0.168 4.168 8 C 0.320 3.680 9 O -0.414 6.414 10 N -0.354 5.354 11 C -0.021 4.021 12 C -0.116 4.116 13 H 0.115 0.885 14 C -0.196 4.196 15 C -0.032 4.032 16 H 0.109 0.891 17 N -0.284 5.284 18 C -0.084 4.084 19 C 0.226 3.774 20 O -0.468 6.468 21 N -0.199 5.199 22 C -0.430 4.430 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.542 5.542 26 Si 0.758 3.242 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 C -0.051 4.051 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.173 0.827 47 H 0.105 0.895 48 H 0.063 0.937 49 H 0.226 0.774 50 H 0.082 0.918 51 H 0.102 0.898 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.791 -21.497 -4.535 27.652 hybrid contribution -0.080 1.109 -0.562 1.246 sum -16.871 -20.389 -5.097 26.950 Atomic orbital electron populations 1.23867 0.95949 1.01830 1.01228 1.22917 0.95912 0.97949 0.99506 1.20180 0.96901 0.95762 0.93687 0.89984 1.21661 0.98054 1.02878 0.93361 1.21727 0.99781 1.01542 0.97442 1.21672 1.00040 0.94769 1.00351 1.20354 0.78131 0.89606 0.79922 1.90698 1.62097 1.50760 1.37819 1.48754 1.46046 1.16437 1.24179 1.22321 0.96638 0.94656 0.88480 1.22090 0.92996 0.95370 1.01138 0.88528 1.21791 0.99383 0.97178 1.01294 1.22745 0.92647 0.92697 0.95079 0.89120 1.60171 1.25113 1.15384 1.27704 1.21749 0.97106 0.94910 0.94635 1.19767 0.84354 0.84617 0.88690 1.90523 1.65172 1.75384 1.15739 1.41864 1.40327 1.26403 1.11317 1.19705 1.23170 1.05696 0.94393 0.87893 1.25273 0.97558 0.99023 0.96099 1.69614 1.36910 1.37438 1.10248 0.85848 0.79381 0.79653 0.79346 1.20384 1.20939 1.19427 1.23289 0.92740 0.86928 1.02186 0.88593 0.88522 0.87386 0.92582 0.89783 0.92806 0.92992 0.92986 0.88887 0.88804 0.91357 0.90595 0.92968 0.91389 0.92626 0.82749 0.89480 0.93655 0.77438 0.91850 0.89771 0.90813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.20 14.32 29.02 0.42 -0.79 16 2 C -0.14 -0.95 7.75 -36.02 -0.28 -1.23 16 3 C -0.05 -0.38 1.80 -91.77 -0.17 -0.55 16 4 H 0.08 0.81 7.60 -51.93 -0.39 0.41 16 5 C -0.12 -1.10 5.18 -26.73 -0.14 -1.24 16 6 C -0.15 -1.24 9.73 37.16 0.36 -0.88 16 7 C -0.13 -0.98 4.23 -27.88 -0.12 -1.10 16 8 C 0.53 5.94 7.57 -10.99 -0.08 5.86 16 9 O -0.54 -7.96 14.20 5.56 0.08 -7.88 16 10 N -0.62 -6.41 3.29 -169.97 -0.56 -6.97 16 11 C 0.10 0.80 6.42 -2.98 -0.02 0.78 16 12 C -0.10 -0.89 3.34 -89.25 -0.30 -1.19 16 13 H 0.10 0.96 8.05 -51.93 -0.42 0.54 16 14 C -0.14 -1.17 8.89 37.15 0.33 -0.84 16 15 C 0.08 0.93 2.93 -66.02 -0.19 0.73 16 16 H 0.09 1.07 7.54 -51.93 -0.39 0.68 16 17 N -0.65 -9.77 5.95 -106.20 -0.63 -10.40 16 18 C 0.05 0.83 6.03 -4.97 -0.03 0.80 16 19 C 0.44 10.23 7.82 -10.98 -0.09 10.14 16 20 O -0.58 -15.58 15.78 5.55 0.09 -15.49 16 21 N -0.56 -14.19 5.29 -10.96 -0.06 -14.25 16 22 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 23 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 26 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 30 C 0.07 0.85 6.65 -2.31 -0.02 0.84 16 31 H 0.10 0.62 7.83 -52.49 -0.41 0.21 16 32 H 0.10 0.49 8.06 -52.49 -0.42 0.07 16 33 H 0.11 0.60 8.06 -52.48 -0.42 0.18 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.97 5.88 -51.93 -0.31 0.67 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.05 0.39 7.38 -51.93 -0.38 0.01 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.57 7.91 -51.92 -0.41 0.16 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.45 7.08 -51.93 -0.37 0.09 16 43 H 0.05 0.42 8.13 -51.92 -0.42 0.00 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.35 5.47 7.91 -39.30 -0.31 5.16 16 47 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 48 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 49 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 50 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 51 H 0.08 1.11 7.85 -51.93 -0.41 0.71 16 52 H 0.07 0.86 7.77 -51.93 -0.40 0.45 16 LS Contribution 419.90 15.07 6.33 6.33 Total: -1.00 -32.27 419.90 -8.72 -40.99 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -9.11 Total: 12.15 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -0.56 Total: 3.33 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.53 Total: -55.45 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.17 Total: -23.37 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -32.27 -8.72 -40.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215376702.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.810 kcal (2) G-P(sol) polarization free energy of solvation -32.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds