Wall clock time and date at job start Tue Mar 31 2020 20:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00040 * 2 1 4 4 H 1.08993 * 109.47048 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.47186 * 239.99678 * 3 2 1 6 6 C 1.53006 * 109.46626 * 65.00419 * 5 3 2 7 7 C 1.53009 * 109.46877 * 119.99914 * 3 2 1 8 8 C 1.50699 * 109.47068 * 184.99850 * 7 3 2 9 9 O 1.21280 * 119.99619 * 0.02562 * 8 7 3 10 10 N 1.34768 * 120.00011 * 180.02562 * 8 7 3 11 11 C 1.47484 * 127.03507 * 0.02866 * 10 8 7 12 12 C 1.54008 * 107.08854 * 154.51419 * 11 10 8 13 13 H 1.09001 * 110.32786 * 120.29697 * 12 11 10 14 14 C 1.52995 * 110.32909 * 242.41445 * 12 11 10 15 15 C 1.54618 * 105.04120 * 1.30736 * 12 11 10 16 16 H 1.09004 * 110.74110 * 263.33111 * 15 12 11 17 17 N 1.46902 * 110.73971 * 140.18273 * 15 12 11 18 18 C 1.46902 * 110.99846 * 154.99684 * 17 15 12 19 19 C 1.50701 * 109.47017 * 180.02562 * 18 17 15 20 20 O 1.21291 * 119.99963 * 0.02562 * 19 18 17 21 21 N 1.34781 * 119.99715 * 179.97438 * 19 18 17 22 22 C 1.37094 * 119.99641 * 180.02562 * 21 19 18 23 23 H 1.08006 * 120.00257 * 0.02562 * 22 21 19 24 24 C 1.38955 * 120.00029 * 180.02562 * 22 21 19 25 25 N 1.31409 * 119.99381 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00055 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47063 * 89.99906 * 26 24 22 28 28 H 1.48502 * 109.47364 * 210.00027 * 26 24 22 29 29 H 1.48506 * 109.47340 * 329.99869 * 26 24 22 30 30 C 1.48123 * 127.03588 * 179.71166 * 10 8 7 31 31 H 1.07997 * 119.99971 * 359.97438 * 1 2 3 32 32 H 1.08001 * 120.00458 * 179.97438 * 1 2 3 33 33 H 1.08006 * 119.99711 * 180.02562 * 2 1 3 34 34 H 1.08993 * 109.47839 * 305.00488 * 5 3 2 35 35 H 1.09000 * 109.47160 * 185.00050 * 5 3 2 36 36 H 1.09001 * 109.46801 * 59.99811 * 6 5 3 37 37 H 1.09001 * 109.46998 * 179.97438 * 6 5 3 38 38 H 1.09000 * 109.47050 * 299.99699 * 6 5 3 39 39 H 1.08997 * 109.47185 * 305.00471 * 7 3 2 40 40 H 1.09010 * 109.46590 * 65.00172 * 7 3 2 41 41 H 1.09001 * 109.91463 * 273.87940 * 11 10 8 42 42 H 1.09002 * 109.91571 * 34.96434 * 11 10 8 43 43 H 1.09011 * 109.47187 * 58.54312 * 14 12 11 44 44 H 1.08995 * 109.47419 * 178.54300 * 14 12 11 45 45 H 1.08997 * 109.47305 * 298.54811 * 14 12 11 46 46 H 1.00891 * 111.00071 * 278.95360 * 17 15 12 47 47 H 1.08999 * 109.47272 * 300.00484 * 18 17 15 48 48 H 1.09007 * 109.46880 * 60.00423 * 18 17 15 49 49 H 0.97001 * 119.99959 * 0.02562 * 21 19 18 50 50 H 0.97002 * 119.99575 * 179.97438 * 25 24 22 51 51 H 1.09002 * 110.65687 * 337.76915 * 30 10 8 52 52 H 1.08994 * 110.66464 * 100.88523 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1335 0.0005 5 6 2.9431 1.3861 -1.2492 6 6 2.0564 1.4308 -2.4953 7 6 2.9431 1.3861 1.2493 8 6 3.6020 2.7399 1.3128 9 8 3.3886 3.5594 0.4446 10 7 4.4283 3.0399 2.3344 11 6 4.7957 2.1675 3.4653 12 6 6.1705 2.6402 3.9735 13 1 6.1039 2.9448 5.0179 14 6 7.2086 1.5283 3.8102 15 6 6.5340 3.8496 3.0812 16 1 7.1829 3.5429 2.2609 17 7 7.1686 4.9100 3.8755 18 6 8.0254 5.7565 3.0345 19 6 8.6582 6.8299 3.8821 20 8 8.4193 6.8840 5.0700 21 7 9.4903 7.7290 3.3203 22 6 10.0664 8.7051 4.0915 23 1 9.8538 8.7534 5.1493 24 6 10.9240 9.6325 3.5123 25 7 11.1831 9.5734 2.2253 26 14 11.7083 10.9629 4.5629 27 1 13.0030 10.4713 5.0989 28 1 11.9429 12.1734 3.7352 29 1 10.8027 11.3019 5.6900 30 6 5.1583 4.3110 2.5476 31 1 -0.5400 0.9353 0.0004 32 1 -0.5401 -0.9353 -0.0004 33 1 1.8499 -0.9354 -0.0004 34 1 3.5905 0.5105 -1.2952 35 1 3.5540 2.2878 -1.2055 36 1 1.4090 2.3065 -2.4492 37 1 2.6830 1.4889 -3.3852 38 1 1.4455 0.5291 -2.5389 39 1 2.3278 1.2394 2.1370 40 1 3.7085 0.6111 1.2056 41 1 4.0550 2.2579 4.2599 42 1 4.8565 1.1318 3.1308 43 1 7.2730 1.2426 2.7602 44 1 8.1807 1.8860 4.1497 45 1 6.9118 0.6640 4.4043 46 1 6.4767 5.4629 4.3588 47 1 8.8055 5.1458 2.5799 48 1 7.4235 6.2187 2.2519 49 1 9.6816 7.6854 2.3703 50 1 11.7814 10.2209 1.8209 51 1 5.2727 4.8511 1.6077 52 1 4.6484 4.9280 3.2873 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215376702.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:19 Heat of formation + Delta-G solvation = -85.294993 kcal Electronic energy + Delta-G solvation = -29116.702528 eV Core-core repulsion = 25115.071741 eV Total energy + Delta-G solvation = -4001.630786 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.37821 -40.21762 -39.35286 -37.49798 -36.21298 -35.54283 -33.48047 -33.23131 -32.64993 -31.66042 -29.93234 -27.82383 -27.32339 -26.08686 -25.02398 -23.36840 -22.63808 -21.51273 -20.95220 -20.55907 -20.09873 -19.89081 -18.16903 -17.72473 -17.33396 -16.99978 -16.48453 -16.29479 -16.09612 -15.78773 -15.67234 -15.43499 -15.20728 -14.69332 -14.66490 -14.53110 -14.23802 -14.00895 -13.91019 -13.74498 -13.50367 -13.48416 -13.26830 -13.00249 -12.93881 -12.83861 -12.77754 -12.42783 -12.13291 -12.09011 -12.04864 -12.00972 -11.89908 -11.69653 -11.60458 -11.52487 -11.51421 -10.74236 -10.36111 -10.19354 -10.03071 -9.82821 -9.31251 -8.47641 -5.96617 1.37599 1.41357 1.42203 1.54251 1.61188 1.92183 2.03576 2.28564 2.87506 3.19447 3.35929 3.51250 3.66123 3.76606 3.81854 3.91646 4.08263 4.16963 4.22819 4.23822 4.31926 4.39858 4.41117 4.43600 4.50737 4.54550 4.56340 4.60831 4.71330 4.76309 4.80087 4.84918 4.91349 4.96876 5.02663 5.04573 5.11127 5.18097 5.22368 5.34627 5.40107 5.42322 5.44887 5.47664 5.78776 5.87872 5.96647 6.07036 6.31662 6.54198 6.58150 7.11092 7.13953 7.54469 8.09132 8.69742 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019766 B = 0.001906 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.208832 B =14687.357264 C =15552.622682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C -0.044 4.044 4 H 0.057 0.943 5 C -0.121 4.121 6 C -0.146 4.146 7 C -0.120 4.120 8 C 0.523 3.477 9 O -0.582 6.582 10 N -0.619 5.619 11 C 0.105 3.895 12 C -0.091 4.091 13 H 0.091 0.909 14 C -0.135 4.135 15 C 0.084 3.916 16 H 0.091 0.909 17 N -0.659 5.659 18 C 0.064 3.936 19 C 0.439 3.561 20 O -0.621 6.621 21 N -0.573 5.573 22 C -0.334 4.334 23 H 0.081 0.919 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.994 3.006 27 H -0.270 1.270 28 H -0.272 1.272 29 H -0.272 1.272 30 C 0.075 3.925 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.127 0.873 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.040 0.960 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.113 0.887 40 H 0.119 0.881 41 H 0.084 0.916 42 H 0.105 0.895 43 H 0.058 0.942 44 H 0.047 0.953 45 H 0.077 0.923 46 H 0.347 0.653 47 H 0.104 0.896 48 H 0.061 0.939 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.062 0.938 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.568 -24.184 -4.652 30.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.163 4.163 3 C -0.063 4.063 4 H 0.076 0.924 5 C -0.159 4.159 6 C -0.203 4.203 7 C -0.159 4.159 8 C 0.314 3.686 9 O -0.463 6.463 10 N -0.353 5.353 11 C -0.017 4.017 12 C -0.111 4.111 13 H 0.109 0.891 14 C -0.192 4.192 15 C -0.027 4.027 16 H 0.109 0.891 17 N -0.291 5.291 18 C -0.069 4.069 19 C 0.226 3.774 20 O -0.507 6.507 21 N -0.211 5.211 22 C -0.464 4.464 23 H 0.099 0.901 24 C -0.214 4.214 25 N -0.562 5.562 26 Si 0.818 3.182 27 H -0.196 1.196 28 H -0.196 1.196 29 H -0.197 1.197 30 C -0.051 4.051 31 H 0.106 0.894 32 H 0.130 0.870 33 H 0.145 0.855 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.103 0.897 42 H 0.123 0.877 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.096 0.904 46 H 0.167 0.833 47 H 0.123 0.877 48 H 0.079 0.921 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.081 0.919 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.259 -24.018 -4.301 29.887 hybrid contribution 0.019 1.864 -0.644 1.972 sum -17.241 -22.154 -4.945 28.504 Atomic orbital electron populations 1.23996 0.96059 1.02236 1.00647 1.22888 0.95885 0.97521 0.99969 1.20107 0.96534 0.96044 0.93657 0.92414 1.21615 0.98143 1.01975 0.94119 1.21709 0.99684 1.01508 0.97394 1.21711 1.00541 0.92848 1.00801 1.21085 0.77764 0.90545 0.79169 1.90686 1.63630 1.52416 1.39546 1.48843 1.45534 1.16177 1.24717 1.22479 0.95789 0.95458 0.87971 1.22063 0.94308 0.94471 1.00259 0.89088 1.21763 0.97974 0.97436 1.02061 1.22773 0.92155 0.92432 0.95333 0.89126 1.60215 1.25379 1.15375 1.28084 1.21591 0.97833 0.93585 0.93879 1.20796 0.83025 0.84756 0.88793 1.90490 1.66080 1.76377 1.17762 1.41945 1.41062 1.26735 1.11313 1.19687 1.25072 1.07667 0.93947 0.90149 1.26071 0.97400 1.00567 0.97350 1.69679 1.37089 1.38139 1.11260 0.84906 0.78398 0.77166 0.77738 1.19551 1.19640 1.19706 1.23126 0.93211 0.87756 1.00978 0.89430 0.86964 0.85523 0.91089 0.92808 0.94111 0.92865 0.91754 0.86849 0.86249 0.89748 0.87677 0.92342 0.93372 0.90366 0.83283 0.87748 0.92105 0.77053 0.91311 0.91935 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.01 14.32 67.79 0.97 -1.04 16 2 C -0.14 -1.53 7.75 25.65 0.20 -1.33 16 3 C -0.04 -0.67 1.80 -11.54 -0.02 -0.69 16 4 H 0.06 1.15 7.60 -2.39 -0.02 1.13 16 5 C -0.12 -2.10 5.18 30.60 0.16 -1.94 16 6 C -0.15 -2.39 9.73 71.98 0.70 -1.69 16 7 C -0.12 -1.53 4.23 29.85 0.13 -1.40 16 8 C 0.52 11.25 7.57 87.66 0.66 11.91 16 9 O -0.58 -17.83 14.20 -3.03 -0.04 -17.87 16 10 N -0.62 -11.92 3.29 -810.07 -2.67 -14.59 16 11 C 0.11 1.30 6.42 86.53 0.56 1.86 16 12 C -0.09 -1.50 3.34 -9.90 -0.03 -1.53 16 13 H 0.09 1.65 8.05 -2.39 -0.02 1.63 16 14 C -0.13 -1.92 8.89 71.98 0.64 -1.28 16 15 C 0.08 1.87 2.93 46.01 0.13 2.01 16 16 H 0.09 2.04 7.54 -2.39 -0.02 2.02 16 17 N -0.66 -19.63 5.95 -489.90 -2.92 -22.55 16 18 C 0.06 2.16 6.03 85.56 0.52 2.68 16 19 C 0.44 20.82 7.82 87.66 0.69 21.51 16 20 O -0.62 -34.03 15.78 -3.06 -0.05 -34.08 16 21 N -0.57 -29.65 5.29 -306.97 -1.62 -31.27 16 22 C -0.33 -19.09 9.68 84.04 0.81 -18.28 16 23 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 24 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 25 N -0.92 -50.20 13.05 21.66 0.28 -49.92 16 26 Si 0.99 43.19 29.55 68.60 2.03 45.22 16 27 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 28 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 29 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 30 C 0.07 1.73 6.65 86.61 0.58 2.31 16 31 H 0.09 1.05 7.83 -2.91 -0.02 1.03 16 32 H 0.11 0.83 8.06 -2.91 -0.02 0.81 16 33 H 0.13 0.91 8.06 -2.91 -0.02 0.89 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.05 1.28 5.88 -2.39 -0.01 1.27 16 36 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.06 0.88 7.38 -2.39 -0.02 0.86 16 39 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.12 0.95 7.91 -2.38 -0.02 0.93 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.11 0.75 7.08 -2.39 -0.02 0.73 16 43 H 0.06 0.77 8.13 -2.38 -0.02 0.75 16 44 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.35 10.91 7.91 -89.70 -0.71 10.20 16 47 H 0.10 3.23 8.08 -2.39 -0.02 3.21 16 48 H 0.06 1.90 8.14 -2.38 -0.02 1.89 16 49 H 0.40 19.55 7.90 -92.71 -0.73 18.82 16 50 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 51 H 0.06 1.71 7.85 -2.39 -0.02 1.69 16 52 H 0.07 1.68 7.77 -2.39 -0.02 1.66 16 Total: -1.00 -72.44 419.90 1.63 -70.81 By element: Atomic # 1 Polarization: 42.00 SS G_CDS: -0.54 Total: 41.46 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 7.15 Total: 12.78 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -6.92 Total: -118.32 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -0.09 Total: -51.95 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -72.44 1.63 -70.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215376702.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.484 kcal (2) G-P(sol) polarization free energy of solvation -72.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds