Wall clock time and date at job start Tue Mar 31 2020 20:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53009 * 109.46966 * 2 1 4 4 H 1.08994 * 109.46642 * 55.00198 * 3 2 1 5 5 C 1.52999 * 109.46924 * 294.99960 * 3 2 1 6 6 C 1.52995 * 109.46977 * 175.00088 * 3 2 1 7 7 C 1.50702 * 109.46931 * 185.00064 * 6 3 2 8 8 O 1.21270 * 120.00212 * 0.02562 * 7 6 3 9 9 N 1.34782 * 119.99755 * 180.02562 * 7 6 3 10 10 C 1.49130 * 134.62981 * 0.81454 * 9 7 6 11 11 C 1.54480 * 85.41968 * 154.38941 * 10 9 7 12 12 H 1.09002 * 114.49494 * 139.27500 * 11 10 9 13 13 C 1.53109 * 111.18827 * 269.53581 * 11 10 9 14 14 C 1.53055 * 109.00818 * 140.41520 * 13 11 10 15 15 N 1.46483 * 108.73173 * 297.16566 * 14 13 11 16 16 C 1.46903 * 110.99831 * 191.10748 * 15 14 13 17 17 C 1.50703 * 109.47060 * 293.95167 * 16 15 14 18 18 O 1.21297 * 119.99804 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99988 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00164 * 180.02562 * 19 17 16 21 21 H 1.08008 * 119.99675 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00336 * 179.97438 * 20 19 17 23 23 N 1.31405 * 119.99922 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99822 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47261 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46812 * 120.00207 * 24 22 20 27 27 H 1.48500 * 109.46911 * 239.99836 * 24 22 20 28 28 C 1.45458 * 112.85472 * 65.77339 * 15 14 13 29 29 C 1.46993 * 134.86107 * 180.02562 * 9 7 6 30 30 H 1.08996 * 111.34283 * 93.56012 * 29 9 7 31 31 H 1.08997 * 109.47413 * 59.99687 * 1 2 3 32 32 H 1.08999 * 109.47160 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47115 * 299.99488 * 1 2 3 34 34 H 1.09000 * 109.47115 * 240.00512 * 2 1 3 35 35 H 1.08998 * 109.47789 * 119.99634 * 2 1 3 36 36 H 1.08999 * 109.47286 * 299.99846 * 5 3 2 37 37 H 1.08996 * 109.47227 * 60.00492 * 5 3 2 38 38 H 1.09007 * 109.46698 * 179.97438 * 5 3 2 39 39 H 1.09004 * 109.47221 * 65.00133 * 6 3 2 40 40 H 1.09002 * 109.47700 * 305.00024 * 6 3 2 41 41 H 1.08998 * 114.19782 * 40.31639 * 10 9 7 42 42 H 1.08998 * 113.79856 * 268.41779 * 10 9 7 43 43 H 1.09008 * 109.54582 * 260.27395 * 13 11 10 44 44 H 1.08997 * 109.55073 * 20.55352 * 13 11 10 45 45 H 1.09000 * 109.59161 * 56.93793 * 14 13 11 46 46 H 1.08995 * 109.59335 * 177.23503 * 14 13 11 47 47 H 1.09002 * 109.47194 * 53.94809 * 16 15 14 48 48 H 1.08996 * 109.47184 * 173.95082 * 16 15 14 49 49 H 0.97004 * 120.00281 * 359.97438 * 19 17 16 50 50 H 0.96997 * 120.00348 * 180.02562 * 23 22 20 51 51 H 1.09010 * 108.49560 * 72.50267 * 28 15 14 52 52 H 1.08994 * 108.50179 * 189.95775 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6351 2.1266 -1.3074 6 6 3.5647 1.4444 0.1257 7 6 4.0568 2.8635 0.2492 8 8 3.2659 3.7827 0.2383 9 7 5.3760 3.1109 0.3718 10 6 6.6022 2.2629 0.4074 11 6 7.3360 3.5189 -0.1125 12 1 8.3110 3.6935 0.3425 13 6 7.3625 3.5505 -1.6431 14 6 7.1348 4.9882 -2.1160 15 7 5.8033 5.4201 -1.6844 16 6 5.4256 6.6851 -2.3289 17 6 6.3340 7.7861 -1.8453 18 8 7.2101 7.5410 -1.0431 19 7 6.1728 9.0430 -2.3042 20 6 6.9995 10.0445 -1.8647 21 1 7.7796 9.8263 -1.1504 22 6 6.8337 11.3403 -2.3382 23 7 5.8848 11.6057 -3.2077 24 14 7.9596 12.7049 -1.7387 25 1 8.9385 12.1494 -0.7701 26 1 8.6854 13.2911 -2.8941 27 1 7.1503 13.7590 -1.0761 28 6 5.6815 5.5153 -0.2381 29 6 6.1950 4.3237 0.5105 30 1 6.3856 4.5560 1.5583 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.8933 -0.5137 -0.8900 35 1 1.8934 -0.5137 0.8900 36 1 2.0698 1.5876 -2.1492 37 1 0.5489 2.1253 -1.3969 38 1 1.9981 3.1545 -1.3071 39 1 4.0028 0.9837 -0.7597 40 1 3.8571 0.8801 1.0113 41 1 6.5929 1.4342 -0.3005 42 1 6.9008 1.9633 1.4120 43 1 8.3311 3.1987 -1.9984 44 1 6.5736 2.9084 -2.0348 45 1 7.8904 5.6408 -1.6787 46 1 7.2007 5.0301 -3.2032 47 1 5.5205 6.5845 -3.4101 48 1 4.3937 6.9279 -2.0757 49 1 5.4724 9.2390 -2.9461 50 1 5.7693 12.5101 -3.5386 51 1 6.2413 6.3877 0.0994 52 1 4.6312 5.6651 0.0114 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221511130.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:55 Heat of formation + Delta-G solvation = -42.234824 kcal Electronic energy + Delta-G solvation = -30699.351093 eV Core-core repulsion = 26699.587535 eV Total energy + Delta-G solvation = -3999.763557 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.96306 -39.01692 -38.23689 -36.21838 -35.64166 -33.81582 -31.88201 -31.29865 -31.08073 -29.60750 -28.54147 -27.16262 -25.81058 -24.34446 -24.00558 -23.21963 -21.63574 -20.44007 -19.69446 -19.27975 -18.07036 -17.65997 -16.80950 -16.35849 -15.92783 -15.87291 -15.25955 -15.06299 -14.69348 -14.59407 -14.32278 -14.02226 -13.89952 -13.80801 -13.59570 -13.16649 -13.04437 -12.85678 -12.55923 -12.24759 -12.21800 -12.03679 -11.86893 -11.72249 -11.54027 -11.47763 -11.26271 -11.14154 -11.05424 -10.92574 -10.74559 -10.69909 -10.67958 -10.46863 -10.37206 -10.26396 -10.11346 -9.48759 -9.26392 -9.08709 -8.49108 -7.99077 -7.25866 -6.44572 -3.86046 2.85204 2.88711 3.13003 3.24237 3.30934 3.84329 4.14611 4.21685 4.34178 4.49794 4.64476 4.71573 4.81546 4.88753 5.01152 5.07621 5.11560 5.20116 5.23862 5.30358 5.33012 5.37077 5.46221 5.54323 5.56026 5.56336 5.63389 5.69083 5.78816 5.79473 5.81803 5.90124 5.92463 5.94735 6.05017 6.11716 6.12107 6.16731 6.21794 6.30129 6.31994 6.45625 6.51158 6.62221 6.73344 7.48621 7.51598 7.67467 7.90833 8.02329 8.40680 8.56606 9.13471 9.50665 10.00808 10.71906 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017692 B = 0.002554 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.299046 B =10961.166849 C =11889.341801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.075 4.075 4 H 0.076 0.924 5 C -0.153 4.153 6 C -0.130 4.130 7 C 0.538 3.462 8 O -0.531 6.531 9 N -0.638 5.638 10 C 0.099 3.901 11 C -0.114 4.114 12 H 0.093 0.907 13 C -0.092 4.092 14 C 0.047 3.953 15 N -0.510 5.510 16 C 0.047 3.953 17 C 0.407 3.593 18 O -0.595 6.595 19 N -0.557 5.557 20 C -0.301 4.301 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.898 5.898 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.281 1.281 28 C 0.032 3.968 29 C 0.155 3.845 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.045 0.955 37 H 0.051 0.949 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.087 0.913 48 H 0.088 0.912 49 H 0.393 0.607 50 H 0.272 0.728 51 H 0.086 0.914 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.201 -23.423 4.294 24.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.094 4.094 4 H 0.094 0.906 5 C -0.210 4.210 6 C -0.170 4.170 7 C 0.328 3.672 8 O -0.408 6.408 9 N -0.375 5.375 10 C -0.024 4.024 11 C -0.133 4.133 12 H 0.111 0.889 13 C -0.130 4.130 14 C -0.081 4.081 15 N -0.233 5.233 16 C -0.084 4.084 17 C 0.193 3.807 18 O -0.482 6.482 19 N -0.192 5.192 20 C -0.431 4.431 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.539 5.539 24 Si 0.756 3.244 25 H -0.193 1.193 26 H -0.207 1.207 27 H -0.207 1.207 28 C -0.096 4.096 29 C 0.053 3.947 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.106 0.894 48 H 0.106 0.894 49 H 0.226 0.774 50 H 0.082 0.918 51 H 0.103 0.897 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.668 -23.296 4.573 24.023 hybrid contribution 0.678 1.424 0.178 1.587 sum -2.990 -21.873 4.751 22.582 Atomic orbital electron populations 1.21804 0.95786 1.01272 1.02186 1.21590 0.96141 0.96306 1.01644 1.20910 0.92778 0.95691 1.00023 0.90581 1.21982 1.00862 1.02598 0.95577 1.21693 0.97498 0.94346 1.03461 1.20181 0.79979 0.91232 0.75847 1.90658 1.53342 1.46677 1.50124 1.50394 1.04040 1.10210 1.72860 1.23705 0.82464 0.95385 1.00814 1.22949 0.98010 0.94816 0.97530 0.88893 1.21401 1.01186 0.97915 0.92501 1.22029 0.91467 0.95037 0.99577 1.61219 1.26801 1.27482 1.07785 1.21984 0.99247 0.87648 0.99561 1.21151 0.88421 0.84594 0.86506 1.90387 1.37420 1.82404 1.38027 1.42083 1.30961 1.06745 1.39384 1.19753 1.12463 0.86950 1.23930 0.87941 1.25295 0.97484 0.98672 0.96467 1.69618 1.31855 1.21851 1.30532 0.85809 0.79707 0.80314 0.78560 1.19268 1.20716 1.20694 1.21405 1.02826 0.97590 0.87792 1.21836 0.86989 0.87001 0.98890 0.89851 0.92304 0.93037 0.92764 0.92073 0.92283 0.93573 0.92971 0.90267 0.89455 0.89749 0.90052 0.89970 0.91503 0.91450 0.91517 0.91619 0.89439 0.89405 0.77359 0.91821 0.89680 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.67 37.15 0.36 -0.79 16 2 C -0.12 -0.93 5.40 -26.73 -0.14 -1.07 16 3 C -0.08 -0.76 2.04 -90.62 -0.18 -0.94 16 4 H 0.08 0.89 7.95 -51.93 -0.41 0.48 16 5 C -0.15 -1.74 8.69 37.16 0.32 -1.42 16 6 C -0.13 -1.28 4.95 -27.88 -0.14 -1.42 16 7 C 0.54 7.41 7.69 -10.98 -0.08 7.33 16 8 O -0.53 -9.36 13.09 5.57 0.07 -9.28 16 9 N -0.64 -8.06 3.42 -171.95 -0.59 -8.65 16 10 C 0.10 0.87 8.08 -1.84 -0.01 0.86 16 11 C -0.11 -1.28 4.39 -89.90 -0.39 -1.67 16 12 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 13 C -0.09 -1.11 5.73 -26.65 -0.15 -1.26 16 14 C 0.05 0.75 5.00 -4.02 -0.02 0.73 16 15 N -0.51 -8.89 4.75 -239.61 -1.14 -10.03 16 16 C 0.05 0.89 5.82 -4.97 -0.03 0.86 16 17 C 0.41 9.45 7.14 -10.98 -0.08 9.37 16 18 O -0.59 -15.11 11.39 5.54 0.06 -15.04 16 19 N -0.56 -14.11 5.29 -10.96 -0.06 -14.17 16 20 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 21 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -24.54 13.05 55.50 0.72 -23.81 16 24 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 C 0.03 0.57 4.70 -6.19 -0.03 0.54 16 29 C 0.16 2.20 4.31 -69.33 -0.30 1.91 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.54 6.56 -51.93 -0.34 0.20 16 38 H 0.08 1.16 5.95 -51.92 -0.31 0.85 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.58 7.94 -51.93 -0.41 0.17 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 44 H 0.07 0.83 7.70 -51.93 -0.40 0.43 16 45 H 0.07 1.27 6.15 -51.93 -0.32 0.95 16 46 H 0.07 1.01 7.97 -51.93 -0.41 0.59 16 47 H 0.09 1.49 8.00 -51.93 -0.42 1.07 16 48 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 49 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 50 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 51 H 0.09 1.80 5.11 -51.92 -0.27 1.53 16 52 H 0.08 1.65 6.71 -51.93 -0.35 1.30 16 LS Contribution 398.34 15.07 6.00 6.00 Total: -1.00 -31.71 398.34 -9.96 -41.66 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -8.89 Total: 12.26 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -1.13 Total: 5.03 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -1.06 Total: -56.66 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: 0.14 Total: -24.33 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.71 -9.96 -41.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221511130.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.571 kcal (2) G-P(sol) polarization free energy of solvation -31.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds