Wall clock time and date at job start Tue Mar 31 2020 20:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53009 * 109.46966 * 2 1 4 4 H 1.08994 * 109.46642 * 55.00198 * 3 2 1 5 5 C 1.52999 * 109.46924 * 294.99960 * 3 2 1 6 6 C 1.52995 * 109.46977 * 175.00088 * 3 2 1 7 7 C 1.50702 * 109.46931 * 185.00064 * 6 3 2 8 8 O 1.21270 * 120.00212 * 0.02562 * 7 6 3 9 9 N 1.34782 * 119.99755 * 180.02562 * 7 6 3 10 10 C 1.49130 * 134.62981 * 0.81454 * 9 7 6 11 11 C 1.54480 * 85.41968 * 154.38941 * 10 9 7 12 12 H 1.09002 * 114.49494 * 139.27500 * 11 10 9 13 13 C 1.53109 * 111.18827 * 269.53581 * 11 10 9 14 14 C 1.53055 * 109.00818 * 140.41520 * 13 11 10 15 15 N 1.46483 * 108.73173 * 297.16566 * 14 13 11 16 16 C 1.46903 * 110.99831 * 191.10748 * 15 14 13 17 17 C 1.50703 * 109.47060 * 293.95167 * 16 15 14 18 18 O 1.21297 * 119.99804 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99988 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00164 * 180.02562 * 19 17 16 21 21 H 1.08008 * 119.99675 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00336 * 179.97438 * 20 19 17 23 23 N 1.31405 * 119.99922 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99822 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47261 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46812 * 120.00207 * 24 22 20 27 27 H 1.48500 * 109.46911 * 239.99836 * 24 22 20 28 28 C 1.45458 * 112.85472 * 65.77339 * 15 14 13 29 29 C 1.46993 * 134.86107 * 180.02562 * 9 7 6 30 30 H 1.08996 * 111.34283 * 93.56012 * 29 9 7 31 31 H 1.08997 * 109.47413 * 59.99687 * 1 2 3 32 32 H 1.08999 * 109.47160 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47115 * 299.99488 * 1 2 3 34 34 H 1.09000 * 109.47115 * 240.00512 * 2 1 3 35 35 H 1.08998 * 109.47789 * 119.99634 * 2 1 3 36 36 H 1.08999 * 109.47286 * 299.99846 * 5 3 2 37 37 H 1.08996 * 109.47227 * 60.00492 * 5 3 2 38 38 H 1.09007 * 109.46698 * 179.97438 * 5 3 2 39 39 H 1.09004 * 109.47221 * 65.00133 * 6 3 2 40 40 H 1.09002 * 109.47700 * 305.00024 * 6 3 2 41 41 H 1.08998 * 114.19782 * 40.31639 * 10 9 7 42 42 H 1.08998 * 113.79856 * 268.41779 * 10 9 7 43 43 H 1.09008 * 109.54582 * 260.27395 * 13 11 10 44 44 H 1.08997 * 109.55073 * 20.55352 * 13 11 10 45 45 H 1.09000 * 109.59161 * 56.93793 * 14 13 11 46 46 H 1.08995 * 109.59335 * 177.23503 * 14 13 11 47 47 H 1.09002 * 109.47194 * 53.94809 * 16 15 14 48 48 H 1.08996 * 109.47184 * 173.95082 * 16 15 14 49 49 H 0.97004 * 120.00281 * 359.97438 * 19 17 16 50 50 H 0.96997 * 120.00348 * 180.02562 * 23 22 20 51 51 H 1.09010 * 108.49560 * 72.50267 * 28 15 14 52 52 H 1.08994 * 108.50179 * 189.95775 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6351 2.1266 -1.3074 6 6 3.5647 1.4444 0.1257 7 6 4.0568 2.8635 0.2492 8 8 3.2659 3.7827 0.2383 9 7 5.3760 3.1109 0.3718 10 6 6.6022 2.2629 0.4074 11 6 7.3360 3.5189 -0.1125 12 1 8.3110 3.6935 0.3425 13 6 7.3625 3.5505 -1.6431 14 6 7.1348 4.9882 -2.1160 15 7 5.8033 5.4201 -1.6844 16 6 5.4256 6.6851 -2.3289 17 6 6.3340 7.7861 -1.8453 18 8 7.2101 7.5410 -1.0431 19 7 6.1728 9.0430 -2.3042 20 6 6.9995 10.0445 -1.8647 21 1 7.7796 9.8263 -1.1504 22 6 6.8337 11.3403 -2.3382 23 7 5.8848 11.6057 -3.2077 24 14 7.9596 12.7049 -1.7387 25 1 8.9385 12.1494 -0.7701 26 1 8.6854 13.2911 -2.8941 27 1 7.1503 13.7590 -1.0761 28 6 5.6815 5.5153 -0.2381 29 6 6.1950 4.3237 0.5105 30 1 6.3856 4.5560 1.5583 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.8933 -0.5137 -0.8900 35 1 1.8934 -0.5137 0.8900 36 1 2.0698 1.5876 -2.1492 37 1 0.5489 2.1253 -1.3969 38 1 1.9981 3.1545 -1.3071 39 1 4.0028 0.9837 -0.7597 40 1 3.8571 0.8801 1.0113 41 1 6.5929 1.4342 -0.3005 42 1 6.9008 1.9633 1.4120 43 1 8.3311 3.1987 -1.9984 44 1 6.5736 2.9084 -2.0348 45 1 7.8904 5.6408 -1.6787 46 1 7.2007 5.0301 -3.2032 47 1 5.5205 6.5845 -3.4101 48 1 4.3937 6.9279 -2.0757 49 1 5.4724 9.2390 -2.9461 50 1 5.7693 12.5101 -3.5386 51 1 6.2413 6.3877 0.0994 52 1 4.6312 5.6651 0.0114 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221511130.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:53 Heat of formation + Delta-G solvation = -64.013199 kcal Electronic energy + Delta-G solvation = -30700.295474 eV Core-core repulsion = 26699.587535 eV Total energy + Delta-G solvation = -4000.707939 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.06408 -40.53429 -39.49774 -37.27936 -36.94771 -35.77280 -33.39522 -32.97384 -31.93006 -30.70797 -29.78470 -28.09631 -27.40616 -25.65186 -25.22452 -24.20394 -22.82614 -21.37310 -21.12151 -20.54174 -19.95822 -18.91880 -17.96621 -17.68731 -17.36403 -16.97276 -16.62903 -16.30929 -16.11706 -15.72864 -15.62211 -15.55023 -15.34951 -15.08849 -14.62238 -14.43389 -14.15228 -13.91239 -13.64474 -13.49542 -13.35392 -13.17914 -13.09029 -13.02776 -12.76370 -12.72725 -12.47352 -12.45906 -12.33743 -12.15360 -12.14399 -11.91357 -11.71373 -11.64628 -11.50042 -11.41063 -11.36639 -11.20914 -10.94145 -10.33047 -10.03809 -9.49376 -8.92189 -8.49093 -6.00324 1.31829 1.37484 1.51864 1.86699 1.92754 1.97067 2.25586 2.92540 3.15378 3.21184 3.41411 3.53223 3.83413 3.88953 4.02340 4.03884 4.14348 4.21316 4.34363 4.41768 4.46806 4.47923 4.51943 4.53897 4.58268 4.62871 4.63618 4.69522 4.76726 4.79195 4.82779 4.87260 4.93950 4.95605 5.04082 5.11683 5.11881 5.17551 5.22702 5.24699 5.27196 5.36330 5.37375 5.48326 5.55077 5.63026 5.88572 6.06240 6.26436 6.53299 6.94905 7.06520 7.39954 7.49491 8.03145 8.66069 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017692 B = 0.002554 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.299046 B =10961.166849 C =11889.341801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.112 4.112 3 C -0.074 4.074 4 H 0.052 0.948 5 C -0.149 4.149 6 C -0.119 4.119 7 C 0.525 3.475 8 O -0.583 6.583 9 N -0.641 5.641 10 C 0.117 3.883 11 C -0.112 4.112 12 H 0.108 0.892 13 C -0.083 4.083 14 C 0.044 3.956 15 N -0.503 5.503 16 C 0.055 3.945 17 C 0.410 3.590 18 O -0.616 6.616 19 N -0.570 5.570 20 C -0.332 4.332 21 H 0.080 0.920 22 C -0.015 4.015 23 N -0.920 5.920 24 Si 0.995 3.005 25 H -0.272 1.272 26 H -0.269 1.269 27 H -0.272 1.272 28 C 0.047 3.953 29 C 0.138 3.862 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.040 0.960 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.033 0.967 46 H 0.071 0.929 47 H 0.110 0.890 48 H 0.089 0.911 49 H 0.394 0.606 50 H 0.278 0.722 51 H 0.045 0.955 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.101 -26.710 4.233 27.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.149 4.149 3 C -0.093 4.093 4 H 0.070 0.930 5 C -0.206 4.206 6 C -0.158 4.158 7 C 0.317 3.683 8 O -0.464 6.464 9 N -0.377 5.377 10 C -0.004 4.004 11 C -0.131 4.131 12 H 0.126 0.874 13 C -0.121 4.121 14 C -0.083 4.083 15 N -0.226 5.226 16 C -0.077 4.077 17 C 0.197 3.803 18 O -0.504 6.504 19 N -0.207 5.207 20 C -0.462 4.462 21 H 0.098 0.902 22 C -0.215 4.215 23 N -0.561 5.561 24 Si 0.818 3.182 25 H -0.197 1.197 26 H -0.194 1.194 27 H -0.197 1.197 28 C -0.082 4.082 29 C 0.034 3.966 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.114 0.886 44 H 0.091 0.909 45 H 0.051 0.949 46 H 0.090 0.910 47 H 0.128 0.872 48 H 0.107 0.893 49 H 0.228 0.772 50 H 0.088 0.912 51 H 0.063 0.937 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.548 -26.631 4.507 27.130 hybrid contribution 0.308 2.442 0.208 2.470 sum -2.240 -24.189 4.716 24.746 Atomic orbital electron populations 1.21825 0.95938 1.01980 1.01552 1.21538 0.95991 0.94425 1.02940 1.20880 0.93316 0.96941 0.98128 0.92964 1.21909 1.01021 1.00639 0.97031 1.21699 0.96873 0.91683 1.05586 1.21024 0.79924 0.92464 0.74919 1.90648 1.54815 1.48533 1.52364 1.50516 1.04712 1.10351 1.72076 1.23916 0.78824 0.94495 1.03115 1.22974 0.97763 0.95466 0.96934 0.87401 1.21389 1.02905 0.94725 0.93071 1.22112 0.89224 0.97209 0.99795 1.61307 1.27905 1.25881 1.07467 1.22022 0.98111 0.86717 1.00851 1.22014 0.88147 0.84831 0.85267 1.90384 1.38507 1.82870 1.38679 1.42164 1.31202 1.07180 1.40115 1.19703 1.13198 0.88425 1.24855 0.90222 1.26107 0.98784 1.00311 0.96297 1.69686 1.32729 1.22697 1.30966 0.84849 0.77798 0.77291 0.78254 1.19677 1.19403 1.19727 1.21161 1.00375 0.98400 0.88266 1.21866 0.89302 0.86683 0.98762 0.89656 0.92986 0.91609 0.93464 0.90835 0.90784 0.92415 0.92733 0.94049 0.87360 0.87027 0.87030 0.87075 0.88618 0.90901 0.94905 0.91047 0.87176 0.89314 0.77195 0.91248 0.93725 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.67 71.98 0.70 -1.38 16 2 C -0.11 -1.42 5.40 30.60 0.17 -1.26 16 3 C -0.07 -1.39 2.04 -10.79 -0.02 -1.41 16 4 H 0.05 1.23 7.95 -2.39 -0.02 1.22 16 5 C -0.15 -3.36 8.69 71.98 0.63 -2.73 16 6 C -0.12 -2.00 4.95 29.85 0.15 -1.86 16 7 C 0.52 14.04 7.69 87.66 0.67 14.72 16 8 O -0.58 -21.49 13.09 -3.00 -0.04 -21.53 16 9 N -0.64 -15.04 3.42 -816.32 -2.79 -17.83 16 10 C 0.12 1.54 8.08 86.35 0.70 2.23 16 11 C -0.11 -2.22 4.39 -10.27 -0.05 -2.27 16 12 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 13 C -0.08 -1.78 5.73 30.65 0.18 -1.60 16 14 C 0.04 1.39 5.00 86.40 0.43 1.83 16 15 N -0.50 -17.98 4.75 -911.99 -4.34 -22.32 16 16 C 0.05 2.14 5.82 85.56 0.50 2.64 16 17 C 0.41 20.01 7.14 87.66 0.63 20.64 16 18 O -0.62 -33.06 11.39 -3.08 -0.04 -33.10 16 19 N -0.57 -30.26 5.29 -306.97 -1.62 -31.89 16 20 C -0.33 -19.17 9.68 84.04 0.81 -18.36 16 21 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 22 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 23 N -0.92 -50.94 13.05 21.66 0.28 -50.65 16 24 Si 0.99 43.65 29.55 68.60 2.03 45.67 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 27 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 28 C 0.05 1.76 4.70 85.55 0.40 2.16 16 29 C 0.14 3.87 4.31 43.82 0.19 4.06 16 30 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.05 0.75 6.56 -2.39 -0.02 0.74 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.05 1.15 6.56 -2.39 -0.02 1.14 16 38 H 0.04 1.26 5.95 -2.38 -0.01 1.25 16 39 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.11 0.89 7.94 -2.39 -0.02 0.87 16 42 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 44 H 0.07 1.52 7.70 -2.39 -0.02 1.50 16 45 H 0.03 1.27 6.15 -2.39 -0.01 1.26 16 46 H 0.07 2.14 7.97 -2.39 -0.02 2.12 16 47 H 0.11 3.78 8.00 -2.39 -0.02 3.76 16 48 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 49 H 0.39 20.26 7.90 -92.71 -0.73 19.53 16 50 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 51 H 0.04 2.04 5.11 -2.38 -0.01 2.03 16 52 H 0.05 2.27 6.71 -2.39 -0.02 2.26 16 Total: -1.00 -74.68 398.34 0.21 -74.47 By element: Atomic # 1 Polarization: 39.95 SS G_CDS: 0.18 Total: 40.13 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 6.54 Total: 17.04 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -8.46 Total: -122.69 kcal Atomic # 8 Polarization: -54.55 SS G_CDS: -0.07 Total: -54.63 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -74.68 0.21 -74.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221511130.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.456 kcal (2) G-P(sol) polarization free energy of solvation -74.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds