Wall clock time and date at job start Tue Mar 31 2020 20:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.46839 * 2 1 4 4 H 1.08997 * 109.47059 * 305.00234 * 3 2 1 5 5 C 1.52995 * 109.47039 * 65.00263 * 3 2 1 6 6 C 1.52995 * 109.46930 * 185.00130 * 3 2 1 7 7 C 1.50702 * 109.46931 * 175.00147 * 6 3 2 8 8 O 1.21270 * 120.00212 * 0.02562 * 7 6 3 9 9 N 1.34782 * 119.99755 * 180.02562 * 7 6 3 10 10 C 1.49130 * 134.62981 * 0.81454 * 9 7 6 11 11 C 1.54480 * 85.41968 * 154.38941 * 10 9 7 12 12 H 1.09002 * 114.49494 * 139.27500 * 11 10 9 13 13 C 1.53109 * 111.18827 * 269.53581 * 11 10 9 14 14 C 1.53055 * 109.00818 * 140.41520 * 13 11 10 15 15 N 1.46483 * 108.73173 * 297.16566 * 14 13 11 16 16 C 1.46903 * 110.99831 * 191.10748 * 15 14 13 17 17 C 1.50703 * 109.47060 * 293.95167 * 16 15 14 18 18 O 1.21297 * 119.99804 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99988 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00164 * 180.02562 * 19 17 16 21 21 H 1.08008 * 119.99675 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00336 * 179.97438 * 20 19 17 23 23 N 1.31405 * 119.99922 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99822 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47261 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46812 * 120.00207 * 24 22 20 27 27 H 1.48500 * 109.46911 * 239.99836 * 24 22 20 28 28 C 1.45458 * 112.85472 * 65.77339 * 15 14 13 29 29 C 1.46993 * 134.86107 * 180.02562 * 9 7 6 30 30 H 1.08996 * 111.34283 * 93.56012 * 29 9 7 31 31 H 1.08999 * 109.47856 * 59.99746 * 1 2 3 32 32 H 1.09005 * 109.46898 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47468 * 299.99591 * 1 2 3 34 34 H 1.09006 * 109.46927 * 240.00648 * 2 1 3 35 35 H 1.08999 * 109.47856 * 120.00254 * 2 1 3 36 36 H 1.08995 * 109.47419 * 179.97438 * 5 3 2 37 37 H 1.08998 * 109.47523 * 300.00296 * 5 3 2 38 38 H 1.09009 * 109.47243 * 59.99694 * 5 3 2 39 39 H 1.09004 * 109.47221 * 55.00216 * 6 3 2 40 40 H 1.09002 * 109.47700 * 295.00107 * 6 3 2 41 41 H 1.08998 * 114.19782 * 40.31639 * 10 9 7 42 42 H 1.08998 * 113.79856 * 268.41779 * 10 9 7 43 43 H 1.09008 * 109.54582 * 260.27395 * 13 11 10 44 44 H 1.08997 * 109.55073 * 20.55352 * 13 11 10 45 45 H 1.09000 * 109.59161 * 56.93793 * 14 13 11 46 46 H 1.08995 * 109.59335 * 177.23503 * 14 13 11 47 47 H 1.09002 * 109.47194 * 53.94809 * 16 15 14 48 48 H 1.08996 * 109.47184 * 173.95082 * 16 15 14 49 49 H 0.97004 * 120.00281 * 359.97438 * 19 17 16 50 50 H 0.96997 * 120.00348 * 180.02562 * 23 22 20 51 51 H 1.09010 * 108.49560 * 72.50267 * 28 15 14 52 52 H 1.08994 * 108.50305 * 190.11590 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5647 1.4444 -0.1258 7 6 4.0568 2.8635 -0.2492 8 8 3.2659 3.7828 -0.2373 9 7 5.3759 3.1109 -0.3729 10 6 6.5995 2.2611 -0.4399 11 6 7.2266 3.4414 -1.2144 12 1 8.2610 3.6582 -0.9478 13 6 7.0028 3.2953 -2.7220 14 6 6.6873 4.6707 -3.3147 15 7 5.4400 5.1624 -2.7246 16 6 4.9502 6.3478 -3.4409 17 6 5.9147 7.4886 -3.2427 18 8 6.9122 7.3297 -2.5712 19 7 5.6688 8.6855 -3.8115 20 6 6.5465 9.7232 -3.6317 21 1 7.4347 9.5817 -3.0337 22 6 6.2933 10.9570 -4.2186 23 7 5.2128 11.1290 -4.9464 24 14 7.4888 12.3711 -3.9728 25 1 8.6178 11.9221 -3.1191 26 1 8.0108 12.8126 -5.2911 27 1 6.7885 13.5025 -3.3135 28 6 5.5548 5.4255 -1.2987 29 6 6.1949 4.3237 -0.5110 30 1 6.5516 4.6739 0.4576 31 1 -0.3635 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5137 0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 1.9988 3.1541 1.3076 37 1 0.5489 2.1252 1.3970 38 1 2.0698 1.5875 2.1492 39 1 3.8569 0.8802 -1.0114 40 1 4.0029 0.9837 0.7596 41 1 6.4828 1.3561 -1.0361 42 1 7.0607 2.0769 0.5304 43 1 7.9038 2.8955 -3.1874 44 1 6.1668 2.6198 -2.9029 45 1 7.4979 5.3624 -3.0850 46 1 6.5746 4.5859 -4.3955 47 1 4.8683 6.1218 -4.5041 48 1 3.9711 6.6281 -3.0526 49 1 4.8712 8.8125 -4.3489 50 1 5.0362 11.9901 -5.3564 51 1 6.1538 6.3257 -1.1602 52 1 4.5576 5.6104 -0.8996 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221511131.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:58 Heat of formation + Delta-G solvation = -42.241003 kcal Electronic energy + Delta-G solvation = -30617.419617 eV Core-core repulsion = 26617.655791 eV Total energy + Delta-G solvation = -3999.763825 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.96312 -39.02051 -38.23990 -36.22431 -35.64161 -33.81531 -31.88178 -31.29827 -31.08196 -29.61499 -28.54847 -27.20132 -25.81047 -24.34066 -24.00515 -23.22362 -21.63547 -20.45951 -19.69093 -19.27515 -18.06765 -17.65997 -16.82584 -16.33660 -15.93079 -15.84051 -15.41429 -14.93406 -14.83123 -14.59499 -14.12609 -14.05454 -13.91647 -13.81296 -13.53888 -13.40221 -12.93855 -12.87179 -12.54230 -12.25587 -12.23069 -12.06774 -11.91494 -11.72030 -11.53300 -11.47741 -11.26480 -11.14231 -11.04584 -10.93873 -10.75994 -10.71057 -10.69758 -10.49435 -10.37164 -10.26367 -10.10744 -9.48798 -9.24323 -9.08526 -8.50179 -7.99048 -7.25820 -6.44530 -3.86007 2.84783 2.89173 3.13035 3.24260 3.30962 3.84380 4.14646 4.21717 4.34055 4.49881 4.63549 4.71124 4.80002 4.90653 5.00595 5.07496 5.11303 5.20319 5.23997 5.30246 5.32636 5.36623 5.46083 5.50330 5.53824 5.55948 5.63957 5.68230 5.78165 5.78764 5.80294 5.89376 5.91569 5.93219 6.03706 6.09897 6.12144 6.16799 6.21803 6.29660 6.31720 6.41666 6.45815 6.62121 6.73400 7.48684 7.51635 7.67587 7.90819 8.02373 8.40655 8.56656 9.13506 9.50712 10.00855 10.71958 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017369 B = 0.002518 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.676608 B =11118.603402 C =11975.960179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.076 4.076 4 H 0.079 0.921 5 C -0.153 4.153 6 C -0.130 4.130 7 C 0.538 3.462 8 O -0.531 6.531 9 N -0.638 5.638 10 C 0.099 3.901 11 C -0.114 4.114 12 H 0.093 0.907 13 C -0.092 4.092 14 C 0.047 3.953 15 N -0.510 5.510 16 C 0.047 3.953 17 C 0.408 3.592 18 O -0.595 6.595 19 N -0.557 5.557 20 C -0.301 4.301 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.898 5.898 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.281 1.281 28 C 0.032 3.968 29 C 0.155 3.845 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.044 0.956 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.087 0.913 48 H 0.088 0.912 49 H 0.393 0.607 50 H 0.272 0.728 51 H 0.086 0.914 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.209 -22.728 7.868 24.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.095 4.095 4 H 0.097 0.903 5 C -0.210 4.210 6 C -0.170 4.170 7 C 0.328 3.672 8 O -0.408 6.408 9 N -0.375 5.375 10 C -0.024 4.024 11 C -0.133 4.133 12 H 0.111 0.889 13 C -0.130 4.130 14 C -0.081 4.081 15 N -0.233 5.233 16 C -0.084 4.084 17 C 0.193 3.807 18 O -0.482 6.482 19 N -0.192 5.192 20 C -0.431 4.431 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.539 5.539 24 Si 0.756 3.244 25 H -0.193 1.193 26 H -0.207 1.207 27 H -0.207 1.207 28 C -0.096 4.096 29 C 0.053 3.947 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.106 0.894 48 H 0.106 0.894 49 H 0.226 0.774 50 H 0.082 0.918 51 H 0.103 0.897 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.625 -22.565 8.206 24.154 hybrid contribution 0.682 1.429 -0.118 1.588 sum -1.943 -21.136 8.088 22.714 Atomic orbital electron populations 1.21806 0.95774 1.01287 1.02193 1.21586 0.96151 0.96263 1.01658 1.20913 0.92857 0.95757 0.99956 0.90251 1.21983 1.01026 1.02268 0.95725 1.21688 0.97443 0.94400 1.03438 1.20181 0.80167 0.91275 0.75621 1.90658 1.53409 1.46748 1.49974 1.50394 1.03964 1.10231 1.72919 1.23705 0.83307 0.95674 0.99676 1.22950 0.98834 0.95052 0.96478 0.88890 1.21401 1.00982 0.98118 0.92503 1.22030 0.92845 0.95299 0.97943 1.61219 1.29713 1.29753 1.02639 1.21984 0.98211 0.88563 0.99687 1.21150 0.89181 0.85017 0.85316 1.90386 1.30601 1.83087 1.44162 1.42083 1.23213 1.09363 1.44517 1.19754 1.04476 0.88948 1.29918 0.87940 1.25295 0.97295 0.98967 0.96359 1.69618 1.25717 1.25577 1.32949 0.85809 0.80030 0.80445 0.78105 1.19267 1.20714 1.20693 1.21411 1.02452 0.98020 0.87732 1.21839 0.87673 0.87289 0.97928 0.89849 0.92629 0.93026 0.92423 0.92133 0.92196 0.90617 0.92831 0.93735 0.89495 0.89704 0.90048 0.89973 0.91494 0.91456 0.91512 0.91615 0.89436 0.89399 0.77357 0.91820 0.89659 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.67 37.15 0.36 -0.80 16 2 C -0.12 -0.93 5.40 -26.73 -0.14 -1.07 16 3 C -0.08 -0.77 2.04 -90.62 -0.18 -0.95 16 4 H 0.08 0.96 7.96 -51.93 -0.41 0.55 16 5 C -0.15 -1.64 8.69 37.15 0.32 -1.32 16 6 C -0.13 -1.27 4.95 -27.88 -0.14 -1.41 16 7 C 0.54 7.42 7.69 -10.98 -0.08 7.33 16 8 O -0.53 -9.36 13.09 5.57 0.07 -9.29 16 9 N -0.64 -8.07 3.42 -171.95 -0.59 -8.66 16 10 C 0.10 0.87 8.08 -1.84 -0.01 0.86 16 11 C -0.11 -1.28 4.39 -89.90 -0.39 -1.68 16 12 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 13 C -0.09 -1.11 5.73 -26.65 -0.15 -1.27 16 14 C 0.05 0.75 5.00 -4.02 -0.02 0.73 16 15 N -0.51 -8.95 4.75 -239.61 -1.14 -10.08 16 16 C 0.05 0.89 5.82 -4.97 -0.03 0.86 16 17 C 0.41 9.47 7.14 -10.98 -0.08 9.39 16 18 O -0.59 -15.12 11.39 5.54 0.06 -15.06 16 19 N -0.56 -14.12 5.29 -10.96 -0.06 -14.18 16 20 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 21 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 22 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 24 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 C 0.03 0.57 4.70 -6.19 -0.03 0.54 16 29 C 0.16 2.21 4.31 -69.33 -0.30 1.91 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 1.03 5.95 -51.93 -0.31 0.72 16 37 H 0.05 0.53 6.56 -51.93 -0.34 0.19 16 38 H 0.04 0.42 8.14 -51.92 -0.42 0.00 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.58 7.94 -51.93 -0.41 0.17 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 44 H 0.07 0.83 7.70 -51.93 -0.40 0.43 16 45 H 0.07 1.27 6.15 -51.93 -0.32 0.95 16 46 H 0.07 1.01 7.97 -51.93 -0.41 0.60 16 47 H 0.09 1.50 8.00 -51.93 -0.42 1.08 16 48 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 49 H 0.39 9.68 7.90 -40.82 -0.32 9.35 16 50 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 51 H 0.09 1.80 5.11 -51.92 -0.27 1.54 16 52 H 0.08 1.65 6.70 -51.93 -0.35 1.31 16 LS Contribution 398.32 15.07 6.00 6.00 Total: -1.00 -31.77 398.32 -9.96 -41.73 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -8.88 Total: 12.20 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -1.13 Total: 5.14 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -1.06 Total: -56.75 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: 0.14 Total: -24.35 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.77 -9.96 -41.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221511131.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.512 kcal (2) G-P(sol) polarization free energy of solvation -31.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds