Wall clock time and date at job start Tue Mar 31 2020 20:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.46839 * 2 1 4 4 H 1.08997 * 109.47059 * 305.00234 * 3 2 1 5 5 C 1.52995 * 109.47039 * 65.00263 * 3 2 1 6 6 C 1.52995 * 109.46930 * 185.00130 * 3 2 1 7 7 C 1.50702 * 109.46931 * 175.00147 * 6 3 2 8 8 O 1.21270 * 120.00212 * 0.02562 * 7 6 3 9 9 N 1.34782 * 119.99755 * 180.02562 * 7 6 3 10 10 C 1.49130 * 134.62981 * 0.81454 * 9 7 6 11 11 C 1.54480 * 85.41968 * 154.38941 * 10 9 7 12 12 H 1.09002 * 114.49494 * 139.27500 * 11 10 9 13 13 C 1.53109 * 111.18827 * 269.53581 * 11 10 9 14 14 C 1.53055 * 109.00818 * 140.41520 * 13 11 10 15 15 N 1.46483 * 108.73173 * 297.16566 * 14 13 11 16 16 C 1.46903 * 110.99831 * 191.10748 * 15 14 13 17 17 C 1.50703 * 109.47060 * 293.95167 * 16 15 14 18 18 O 1.21297 * 119.99804 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99988 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00164 * 180.02562 * 19 17 16 21 21 H 1.08008 * 119.99675 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00336 * 179.97438 * 20 19 17 23 23 N 1.31405 * 119.99922 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99822 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47261 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46812 * 120.00207 * 24 22 20 27 27 H 1.48500 * 109.46911 * 239.99836 * 24 22 20 28 28 C 1.45458 * 112.85472 * 65.77339 * 15 14 13 29 29 C 1.46993 * 134.86107 * 180.02562 * 9 7 6 30 30 H 1.08996 * 111.34283 * 93.56012 * 29 9 7 31 31 H 1.08999 * 109.47856 * 59.99746 * 1 2 3 32 32 H 1.09005 * 109.46898 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47468 * 299.99591 * 1 2 3 34 34 H 1.09006 * 109.46927 * 240.00648 * 2 1 3 35 35 H 1.08999 * 109.47856 * 120.00254 * 2 1 3 36 36 H 1.08995 * 109.47419 * 179.97438 * 5 3 2 37 37 H 1.08998 * 109.47523 * 300.00296 * 5 3 2 38 38 H 1.09009 * 109.47243 * 59.99694 * 5 3 2 39 39 H 1.09004 * 109.47221 * 55.00216 * 6 3 2 40 40 H 1.09002 * 109.47700 * 295.00107 * 6 3 2 41 41 H 1.08998 * 114.19782 * 40.31639 * 10 9 7 42 42 H 1.08998 * 113.79856 * 268.41779 * 10 9 7 43 43 H 1.09008 * 109.54582 * 260.27395 * 13 11 10 44 44 H 1.08997 * 109.55073 * 20.55352 * 13 11 10 45 45 H 1.09000 * 109.59161 * 56.93793 * 14 13 11 46 46 H 1.08995 * 109.59335 * 177.23503 * 14 13 11 47 47 H 1.09002 * 109.47194 * 53.94809 * 16 15 14 48 48 H 1.08996 * 109.47184 * 173.95082 * 16 15 14 49 49 H 0.97004 * 120.00281 * 359.97438 * 19 17 16 50 50 H 0.96997 * 120.00348 * 180.02562 * 23 22 20 51 51 H 1.09010 * 108.49560 * 72.50267 * 28 15 14 52 52 H 1.08994 * 108.50305 * 190.11590 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5647 1.4444 -0.1258 7 6 4.0568 2.8635 -0.2492 8 8 3.2659 3.7828 -0.2373 9 7 5.3759 3.1109 -0.3729 10 6 6.5995 2.2611 -0.4399 11 6 7.2266 3.4414 -1.2144 12 1 8.2610 3.6582 -0.9478 13 6 7.0028 3.2953 -2.7220 14 6 6.6873 4.6707 -3.3147 15 7 5.4400 5.1624 -2.7246 16 6 4.9502 6.3478 -3.4409 17 6 5.9147 7.4886 -3.2427 18 8 6.9122 7.3297 -2.5712 19 7 5.6688 8.6855 -3.8115 20 6 6.5465 9.7232 -3.6317 21 1 7.4347 9.5817 -3.0337 22 6 6.2933 10.9570 -4.2186 23 7 5.2128 11.1290 -4.9464 24 14 7.4888 12.3711 -3.9728 25 1 8.6178 11.9221 -3.1191 26 1 8.0108 12.8126 -5.2911 27 1 6.7885 13.5025 -3.3135 28 6 5.5548 5.4255 -1.2987 29 6 6.1949 4.3237 -0.5110 30 1 6.5516 4.6739 0.4576 31 1 -0.3635 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5137 0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 1.9988 3.1541 1.3076 37 1 0.5489 2.1252 1.3970 38 1 2.0698 1.5875 2.1492 39 1 3.8569 0.8802 -1.0114 40 1 4.0029 0.9837 0.7596 41 1 6.4828 1.3561 -1.0361 42 1 7.0607 2.0769 0.5304 43 1 7.9038 2.8955 -3.1874 44 1 6.1668 2.6198 -2.9029 45 1 7.4979 5.3624 -3.0850 46 1 6.5746 4.5859 -4.3955 47 1 4.8683 6.1218 -4.5041 48 1 3.9711 6.6281 -3.0526 49 1 4.8712 8.8125 -4.3489 50 1 5.0362 11.9901 -5.3564 51 1 6.1538 6.3257 -1.1602 52 1 4.5576 5.6104 -0.8996 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221511131.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:56 Heat of formation + Delta-G solvation = -64.070795 kcal Electronic energy + Delta-G solvation = -30618.366227 eV Core-core repulsion = 26617.655791 eV Total energy + Delta-G solvation = -4000.710436 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.06525 -40.53600 -39.50175 -37.28026 -36.95084 -35.77350 -33.39584 -32.97485 -31.93217 -30.71024 -29.78874 -28.11422 -27.40754 -25.65296 -25.21374 -24.21371 -22.82751 -21.38042 -21.12979 -20.53452 -19.95636 -18.91748 -17.97030 -17.69469 -17.36454 -16.88746 -16.71626 -16.34043 -16.09188 -15.86902 -15.61365 -15.51987 -15.28918 -14.94981 -14.64789 -14.49102 -14.21674 -13.93409 -13.62523 -13.45242 -13.37822 -13.16103 -13.08844 -13.04537 -12.80208 -12.72904 -12.47460 -12.45943 -12.32302 -12.15996 -12.14697 -11.91038 -11.70517 -11.66815 -11.51660 -11.42109 -11.37257 -11.20570 -10.94260 -10.30814 -10.03796 -9.50544 -8.92445 -8.49139 -6.00369 1.31836 1.37494 1.51882 1.86383 1.92843 1.97059 2.25583 2.92417 3.15352 3.21081 3.41334 3.53093 3.83037 3.88707 4.01590 4.03975 4.14506 4.21030 4.34252 4.42480 4.46654 4.47246 4.52061 4.53648 4.58062 4.62075 4.63359 4.70008 4.74098 4.78999 4.82241 4.86510 4.93432 4.95961 5.03810 5.11424 5.11826 5.16251 5.22238 5.24584 5.26288 5.36172 5.36373 5.48220 5.54446 5.61284 5.88490 6.06070 6.26258 6.53254 6.94794 7.06473 7.39843 7.49427 8.03069 8.66056 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017369 B = 0.002518 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.676608 B =11118.603402 C =11975.960179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 C -0.075 4.075 4 H 0.050 0.950 5 C -0.149 4.149 6 C -0.119 4.119 7 C 0.525 3.475 8 O -0.583 6.583 9 N -0.641 5.641 10 C 0.117 3.883 11 C -0.112 4.112 12 H 0.108 0.892 13 C -0.083 4.083 14 C 0.044 3.956 15 N -0.504 5.504 16 C 0.055 3.945 17 C 0.410 3.590 18 O -0.616 6.616 19 N -0.570 5.570 20 C -0.332 4.332 21 H 0.080 0.920 22 C -0.015 4.015 23 N -0.920 5.920 24 Si 0.995 3.005 25 H -0.272 1.272 26 H -0.269 1.269 27 H -0.272 1.272 28 C 0.046 3.954 29 C 0.138 3.862 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.040 0.960 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.096 0.904 44 H 0.072 0.928 45 H 0.033 0.967 46 H 0.071 0.929 47 H 0.110 0.890 48 H 0.089 0.911 49 H 0.394 0.606 50 H 0.278 0.722 51 H 0.045 0.955 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.085 -25.997 8.075 27.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.149 4.149 3 C -0.094 4.094 4 H 0.068 0.932 5 C -0.206 4.206 6 C -0.158 4.158 7 C 0.317 3.683 8 O -0.464 6.464 9 N -0.377 5.377 10 C -0.003 4.003 11 C -0.131 4.131 12 H 0.126 0.874 13 C -0.121 4.121 14 C -0.084 4.084 15 N -0.226 5.226 16 C -0.077 4.077 17 C 0.197 3.803 18 O -0.504 6.504 19 N -0.207 5.207 20 C -0.462 4.462 21 H 0.098 0.902 22 C -0.215 4.215 23 N -0.561 5.561 24 Si 0.818 3.182 25 H -0.197 1.197 26 H -0.194 1.194 27 H -0.197 1.197 28 C -0.082 4.082 29 C 0.034 3.966 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.114 0.886 44 H 0.091 0.909 45 H 0.051 0.949 46 H 0.090 0.910 47 H 0.128 0.872 48 H 0.107 0.893 49 H 0.228 0.772 50 H 0.088 0.912 51 H 0.063 0.937 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.482 -25.882 8.410 27.255 hybrid contribution 0.309 2.444 -0.156 2.468 sum -1.173 -23.438 8.254 24.877 Atomic orbital electron populations 1.21826 0.95947 1.01983 1.01545 1.21536 0.95985 0.94424 1.02938 1.20881 0.93348 0.96967 0.98199 0.93191 1.21919 1.01194 1.00519 0.96994 1.21695 0.96868 0.91696 1.05552 1.21024 0.80121 0.92514 0.74675 1.90647 1.54884 1.48607 1.52223 1.50517 1.04661 1.10363 1.72115 1.23916 0.80185 0.95121 1.01125 1.22974 0.98803 0.95347 0.96018 0.87394 1.21390 1.02458 0.95254 0.92993 1.22115 0.90626 0.97011 0.98602 1.61309 1.30686 1.28234 1.02416 1.22024 0.96969 0.87430 1.01301 1.22010 0.89249 0.85336 0.83656 1.90384 1.31867 1.83584 1.44600 1.42165 1.23248 1.09756 1.45496 1.19703 1.04772 0.90539 1.31167 0.90220 1.26107 0.98930 1.00821 0.95631 1.69686 1.26755 1.26472 1.33176 0.84849 0.77732 0.77224 0.78386 1.19675 1.19398 1.19725 1.21166 1.00211 0.98466 0.88379 1.21868 0.89378 0.87402 0.97971 0.89659 0.93623 0.91604 0.92843 0.90979 0.90639 0.94091 0.92639 0.92098 0.87326 0.87074 0.87007 0.87092 0.88596 0.90900 0.94892 0.91033 0.87160 0.89304 0.77192 0.91245 0.93688 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.67 71.98 0.70 -1.41 16 2 C -0.11 -1.43 5.40 30.59 0.17 -1.27 16 3 C -0.07 -1.42 2.04 -10.79 -0.02 -1.44 16 4 H 0.05 1.24 7.96 -2.39 -0.02 1.22 16 5 C -0.15 -3.16 8.69 71.98 0.63 -2.54 16 6 C -0.12 -2.00 4.95 29.85 0.15 -1.86 16 7 C 0.52 14.06 7.69 87.66 0.67 14.74 16 8 O -0.58 -21.52 13.09 -3.00 -0.04 -21.56 16 9 N -0.64 -15.06 3.42 -816.32 -2.79 -17.85 16 10 C 0.12 1.54 8.08 86.35 0.70 2.24 16 11 C -0.11 -2.23 4.39 -10.27 -0.05 -2.27 16 12 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 13 C -0.08 -1.78 5.73 30.65 0.18 -1.60 16 14 C 0.04 1.39 5.00 86.40 0.43 1.82 16 15 N -0.50 -18.07 4.75 -911.99 -4.34 -22.40 16 16 C 0.05 2.13 5.82 85.56 0.50 2.63 16 17 C 0.41 20.03 7.14 87.66 0.63 20.65 16 18 O -0.62 -33.07 11.39 -3.08 -0.04 -33.11 16 19 N -0.57 -30.28 5.29 -306.97 -1.62 -31.90 16 20 C -0.33 -19.18 9.68 84.04 0.81 -18.36 16 21 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 22 C -0.02 -0.82 5.50 84.93 0.47 -0.36 16 23 N -0.92 -50.96 13.05 21.66 0.28 -50.67 16 24 Si 0.99 43.65 29.55 68.60 2.03 45.67 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 27 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 28 C 0.05 1.75 4.70 85.55 0.40 2.16 16 29 C 0.14 3.88 4.31 43.82 0.19 4.07 16 30 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.05 0.75 6.56 -2.39 -0.02 0.74 16 34 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.04 1.17 5.95 -2.39 -0.01 1.15 16 37 H 0.05 1.11 6.56 -2.39 -0.02 1.09 16 38 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.11 0.89 7.94 -2.39 -0.02 0.87 16 42 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 44 H 0.07 1.52 7.70 -2.39 -0.02 1.50 16 45 H 0.03 1.28 6.15 -2.39 -0.01 1.26 16 46 H 0.07 2.14 7.97 -2.39 -0.02 2.12 16 47 H 0.11 3.79 8.00 -2.39 -0.02 3.77 16 48 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 49 H 0.39 20.27 7.90 -92.71 -0.73 19.54 16 50 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 51 H 0.05 2.06 5.11 -2.38 -0.01 2.05 16 52 H 0.05 2.28 6.70 -2.39 -0.02 2.27 16 Total: -1.00 -74.78 398.32 0.21 -74.57 By element: Atomic # 1 Polarization: 39.88 SS G_CDS: 0.18 Total: 40.06 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: 6.54 Total: 17.20 kcal Atomic # 7 Polarization: -114.37 SS G_CDS: -8.46 Total: -122.83 kcal Atomic # 8 Polarization: -54.60 SS G_CDS: -0.07 Total: -54.67 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -74.78 0.21 -74.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221511131.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.501 kcal (2) G-P(sol) polarization free energy of solvation -74.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds