Wall clock time and date at job start Tue Mar 31 2020 20:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52997 * 109.47647 * 2 1 4 4 H 1.09002 * 109.47137 * 305.00195 * 3 2 1 5 5 C 1.53001 * 109.47078 * 64.99721 * 3 2 1 6 6 C 1.50700 * 109.47572 * 185.00004 * 3 2 1 7 7 O 1.21285 * 119.99440 * 327.18874 * 6 3 2 8 8 N 1.34774 * 120.00122 * 147.19122 * 6 3 2 9 9 C 1.44315 * 116.32053 * 185.28192 * 8 6 3 10 10 C 1.51626 * 113.16197 * 173.31596 * 9 8 6 11 11 C 1.51148 * 111.09206 * 38.60320 * 10 9 8 12 12 H 1.09002 * 113.08455 * 65.34486 * 11 10 9 13 13 C 1.55596 * 105.79258 * 189.26693 * 11 10 9 14 14 C 1.54329 * 104.72910 * 89.87466 * 13 11 10 15 15 N 1.48408 * 106.87487 * 0.51034 * 14 13 11 16 16 C 1.46901 * 111.00450 * 145.68736 * 15 14 13 17 17 C 1.50699 * 109.47090 * 65.75194 * 16 15 14 18 18 O 1.21297 * 119.99731 * 5.60784 * 17 16 15 19 19 N 1.34773 * 120.00298 * 185.60068 * 17 16 15 20 20 C 1.37101 * 120.00200 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99783 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99853 * 180.02562 * 20 19 17 23 23 N 1.31409 * 120.00309 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99778 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46972 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47027 * 119.99969 * 24 22 20 27 27 H 1.48500 * 109.46992 * 240.00079 * 24 22 20 28 28 C 1.47874 * 104.67923 * 25.86192 * 15 14 13 29 29 H 1.08990 * 109.01716 * 73.38269 * 28 15 14 30 30 C 1.44004 * 116.32332 * 5.30290 * 8 6 3 31 31 H 1.08998 * 109.47170 * 300.00500 * 1 2 3 32 32 H 1.09004 * 109.47272 * 60.00108 * 1 2 3 33 33 H 1.08997 * 109.47616 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.47387 * 239.99431 * 2 1 3 35 35 H 1.09004 * 109.47272 * 119.99892 * 2 1 3 36 36 H 1.08996 * 109.47219 * 297.52683 * 5 3 2 37 37 H 1.08996 * 109.47024 * 57.52734 * 5 3 2 38 38 H 1.09006 * 109.47241 * 177.52648 * 5 3 2 39 39 H 1.09004 * 108.74521 * 294.25909 * 9 8 6 40 40 H 1.08997 * 108.74784 * 52.48266 * 9 8 6 41 41 H 1.09001 * 109.08323 * 159.11210 * 10 9 8 42 42 H 1.09004 * 109.08382 * 278.15413 * 10 9 8 43 43 H 1.09003 * 110.40172 * 331.03494 * 13 11 10 44 44 H 1.08997 * 110.40807 * 208.72465 * 13 11 10 45 45 H 1.09003 * 109.97832 * 119.86719 * 14 13 11 46 46 H 1.09000 * 109.98378 * 241.15431 * 14 13 11 47 47 H 1.08997 * 109.47383 * 185.75844 * 16 15 14 48 48 H 1.09006 * 109.46668 * 305.75740 * 16 15 14 49 49 H 0.97005 * 119.99701 * 0.02562 * 19 17 16 50 50 H 0.97005 * 120.00337 * 180.02562 * 23 22 20 51 51 H 1.09000 * 108.18742 * 55.94711 * 30 8 6 52 52 H 1.09002 * 108.18545 * 299.31552 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5419 1.4442 -0.1238 7 8 4.1919 0.5459 0.3677 8 7 4.1628 2.4439 -0.7807 9 6 5.5889 2.3071 -0.9539 10 6 6.1885 3.3842 -1.8368 11 6 5.5399 4.7244 -1.5765 12 1 5.7338 5.1054 -0.5738 13 6 6.0641 5.6725 -2.6933 14 6 5.0481 5.5214 -3.8451 15 7 4.0172 4.5574 -3.3865 16 6 2.6947 4.9058 -3.9228 17 6 2.7024 4.7461 -5.4213 18 8 3.6758 4.2820 -5.9767 19 7 1.6278 5.1188 -6.1443 20 6 1.6347 4.9731 -7.5075 21 1 2.5011 4.5592 -8.0020 22 6 0.5269 5.3578 -8.2529 23 7 -0.5274 5.8610 -7.6512 24 14 0.5365 5.1599 -10.1104 25 1 1.8323 4.5747 -10.5391 26 1 -0.5724 4.2604 -10.5181 27 1 0.3577 6.4878 -10.7506 28 6 4.0353 4.6627 -1.9116 29 1 3.5685 5.6024 -1.6169 30 6 3.3280 3.5280 -1.2299 31 1 -0.3633 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.5481 2.1645 1.3761 37 1 2.0332 1.5625 2.1509 38 1 2.0361 3.1400 1.3264 39 1 6.0665 2.3507 0.0250 40 1 5.7958 1.3348 -1.4009 41 1 7.2572 3.4565 -1.6347 42 1 6.0414 3.1112 -2.8818 43 1 7.0571 5.3630 -3.0194 44 1 6.0855 6.7028 -2.3380 45 1 4.5866 6.4845 -4.0633 46 1 5.5477 5.1374 -4.7345 47 1 1.9421 4.2462 -3.4910 48 1 2.4606 5.9397 -3.6688 49 1 0.8495 5.4902 -5.7001 50 1 -1.3009 6.1292 -8.1716 51 1 2.7962 3.9282 -0.3667 52 1 2.5883 3.1239 -1.9211 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222274893.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:12 Heat of formation + Delta-G solvation = -68.969997 kcal Electronic energy + Delta-G solvation = -30977.742812 eV Core-core repulsion = 26976.819930 eV Total energy + Delta-G solvation = -4000.922882 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.09608 -39.52972 -37.94737 -35.94212 -35.49757 -34.02390 -33.46610 -31.28806 -30.68715 -30.23666 -29.49272 -26.74884 -25.63564 -24.55689 -24.31362 -23.26344 -21.59025 -20.96004 -19.66053 -19.18100 -18.25791 -17.82831 -17.40722 -16.51706 -16.15813 -15.86089 -15.56146 -15.05947 -14.95025 -14.60953 -14.47248 -14.08223 -13.97281 -13.80976 -13.72071 -13.49707 -13.13536 -12.78049 -12.58839 -12.48222 -12.36580 -12.23391 -12.11424 -11.86261 -11.73180 -11.72960 -11.48124 -11.40063 -11.17082 -10.95851 -10.91551 -10.84603 -10.67804 -10.54511 -10.40863 -10.36338 -10.24913 -9.66651 -9.52913 -8.62401 -8.48382 -8.06479 -7.97406 -6.44486 -3.85169 2.56687 2.97906 3.14241 3.25164 3.32148 3.86738 3.87817 4.17470 4.28143 4.35331 4.54719 4.63178 4.75935 4.81466 4.87306 5.00978 5.06599 5.12739 5.18038 5.22073 5.22637 5.27454 5.30832 5.34687 5.36902 5.44381 5.48702 5.61905 5.67873 5.69696 5.71344 5.71871 5.78769 5.80924 5.88768 5.90140 5.93897 5.95648 6.08164 6.12729 6.19026 6.24221 6.37852 6.44925 6.66779 7.06790 7.15417 7.27497 7.52882 8.03602 8.14406 8.58860 9.15816 9.51496 10.03247 10.73333 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010910 B = 0.003210 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.902652 B = 8720.870386 C =10494.946099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C -0.116 4.116 4 H 0.094 0.906 5 C -0.140 4.140 6 C 0.510 3.490 7 O -0.542 6.542 8 N -0.589 5.589 9 C 0.128 3.872 10 C -0.118 4.118 11 C -0.082 4.082 12 H 0.088 0.912 13 C -0.130 4.130 14 C 0.044 3.956 15 N -0.479 5.479 16 C 0.034 3.966 17 C 0.444 3.556 18 O -0.576 6.576 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 C 0.057 3.943 29 H 0.059 0.941 30 C 0.128 3.872 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.042 0.958 46 H 0.094 0.906 47 H 0.088 0.912 48 H 0.049 0.951 49 H 0.391 0.609 50 H 0.271 0.729 51 H 0.066 0.934 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.861 -1.813 18.228 18.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.144 4.144 3 C -0.137 4.137 4 H 0.112 0.888 5 C -0.198 4.198 6 C 0.298 3.702 7 O -0.420 6.420 8 N -0.322 5.322 9 C 0.005 3.995 10 C -0.156 4.156 11 C -0.101 4.101 12 H 0.106 0.894 13 C -0.168 4.168 14 C -0.084 4.084 15 N -0.204 5.204 16 C -0.098 4.098 17 C 0.229 3.771 18 O -0.459 6.459 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.755 3.245 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.052 4.052 29 H 0.077 0.923 30 C 0.004 3.996 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.061 0.939 46 H 0.113 0.887 47 H 0.106 0.894 48 H 0.067 0.933 49 H 0.224 0.776 50 H 0.081 0.919 51 H 0.084 0.916 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.834 -3.018 17.777 18.952 hybrid contribution -0.956 1.200 -0.607 1.649 sum 4.878 -1.819 17.170 17.942 Atomic orbital electron populations 1.21830 0.95253 1.01927 1.02062 1.21365 0.95733 0.94134 1.03194 1.21458 0.91922 0.99488 1.00838 0.88758 1.21760 1.02180 1.00141 0.95707 1.20778 0.90438 0.81276 0.77696 1.90662 1.67629 1.36532 1.47143 1.46593 1.08012 1.21278 1.56286 1.20528 0.79783 0.99599 0.99590 1.21208 0.99188 0.93287 1.01913 1.21670 0.93589 0.96263 0.98569 0.89414 1.22866 0.99701 0.99000 0.95281 1.22963 0.92844 0.94109 0.98465 1.64663 1.04413 1.48320 1.03014 1.22129 0.91842 0.99623 0.96187 1.19652 0.85000 0.84868 0.87563 1.90522 1.34441 1.48997 1.71977 1.41865 1.15145 1.55724 1.07450 1.19737 1.02262 1.39194 0.81530 0.87898 1.25245 0.95056 0.96948 1.00640 1.69614 1.05338 1.42758 1.36638 0.85820 0.78483 0.77898 0.82278 1.19223 1.20724 1.20780 1.22012 0.96483 0.96464 0.90240 0.92306 1.20288 0.92838 0.87965 0.98498 0.92435 0.92418 0.92491 0.91690 0.90993 0.91072 0.91925 0.92361 0.92591 0.91569 0.90796 0.89354 0.90753 0.91802 0.93928 0.88732 0.89370 0.93281 0.77562 0.91934 0.91592 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.67 37.15 0.36 -0.93 16 2 C -0.11 -1.10 4.95 -26.74 -0.13 -1.23 16 3 C -0.12 -1.19 1.97 -91.77 -0.18 -1.37 16 4 H 0.09 0.91 6.11 -51.93 -0.32 0.60 16 5 C -0.14 -1.16 8.77 37.16 0.33 -0.83 16 6 C 0.51 6.69 6.54 -10.99 -0.07 6.62 16 7 O -0.54 -8.81 16.00 5.55 0.09 -8.72 16 8 N -0.59 -7.22 3.19 -179.94 -0.57 -7.80 16 9 C 0.13 1.54 5.47 -5.90 -0.03 1.51 16 10 C -0.12 -1.30 4.74 -28.36 -0.13 -1.44 16 11 C -0.08 -0.85 3.56 -89.51 -0.32 -1.17 16 12 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 13 C -0.13 -1.42 6.28 -24.65 -0.15 -1.58 16 14 C 0.04 0.65 5.42 -2.29 -0.01 0.64 16 15 N -0.48 -7.31 4.21 -226.09 -0.95 -8.26 16 16 C 0.03 0.56 5.09 -4.98 -0.03 0.54 16 17 C 0.44 10.09 7.47 -10.99 -0.08 10.01 16 18 O -0.58 -15.10 14.60 5.54 0.08 -15.02 16 19 N -0.56 -13.91 5.29 -10.96 -0.06 -13.97 16 20 C -0.30 -8.15 9.68 -14.93 -0.14 -8.29 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.11 13.05 55.50 0.72 -23.39 16 24 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 C 0.06 0.66 2.15 -67.96 -0.15 0.52 16 29 H 0.06 0.62 8.01 -51.93 -0.42 0.20 16 30 C 0.13 1.40 4.77 -6.82 -0.03 1.37 16 31 H 0.06 0.42 6.62 -51.93 -0.34 0.08 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 35 H 0.07 0.78 8.02 -51.93 -0.42 0.37 16 36 H 0.07 0.48 6.69 -51.93 -0.35 0.14 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.44 6.83 -51.93 -0.35 0.09 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.89 7.97 -51.93 -0.41 0.47 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.09 1.21 7.33 -51.93 -0.38 0.83 16 43 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.04 0.65 7.65 -51.93 -0.40 0.25 16 46 H 0.09 1.68 7.34 -51.93 -0.38 1.30 16 47 H 0.09 1.32 6.96 -51.93 -0.36 0.96 16 48 H 0.05 0.74 7.93 -51.93 -0.41 0.33 16 49 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 50 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 51 H 0.07 0.58 6.44 -51.93 -0.33 0.25 16 52 H 0.07 0.87 5.53 -51.93 -0.29 0.58 16 LS Contribution 394.91 15.07 5.95 5.95 Total: -1.00 -32.02 394.91 -9.42 -41.44 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -8.78 Total: 9.11 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -0.88 Total: 4.87 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.86 Total: -53.41 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: 0.17 Total: -23.73 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.02 -9.42 -41.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222274893.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.531 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds