Wall clock time and date at job start Tue Mar 31 2020 19:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47141 * 2 1 4 4 C 1.50698 * 109.47407 * 120.00148 * 2 1 3 5 5 O 1.21284 * 119.99818 * 245.49559 * 4 2 1 6 6 N 1.34771 * 120.00378 * 65.76463 * 4 2 1 7 7 C 1.46503 * 119.99816 * 4.58327 * 6 4 2 8 8 C 1.46499 * 120.00299 * 184.58129 * 6 4 2 9 9 C 1.50703 * 109.46621 * 90.00203 * 8 6 4 10 10 O 1.21281 * 120.00519 * 0.02562 * 9 8 6 11 11 N 1.34777 * 119.99797 * 179.97438 * 9 8 6 12 12 C 1.47159 * 121.21743 * 359.71598 * 11 9 8 13 13 C 1.53294 * 107.73918 * 122.70791 * 12 11 9 14 14 C 1.53097 * 110.50658 * 57.54868 * 13 12 11 15 15 H 1.09002 * 113.06684 * 70.89407 * 14 13 12 16 16 C 1.56029 * 106.38585 * 195.31840 * 14 13 12 17 17 C 1.54500 * 102.61035 * 78.37219 * 16 14 13 18 18 N 1.46651 * 107.02851 * 22.26417 * 17 16 14 19 19 C 1.36945 * 125.63966 * 182.10071 * 18 17 16 20 20 H 1.07995 * 119.99714 * 180.56217 * 19 18 17 21 21 C 1.38815 * 119.99703 * 0.55649 * 19 18 17 22 22 N 1.31616 * 120.00247 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99866 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47342 * 90.00114 * 23 21 19 25 25 H 1.48504 * 109.47264 * 210.00139 * 23 21 19 26 26 H 1.48503 * 109.46983 * 329.99955 * 23 21 19 27 27 C 1.46463 * 108.30131 * 2.57229 * 18 17 16 28 28 H 1.09003 * 108.42116 * 88.74414 * 27 18 17 29 29 C 1.46762 * 121.21978 * 180.02562 * 11 9 8 30 30 H 1.09005 * 109.46811 * 310.19714 * 1 2 3 31 31 H 1.08998 * 109.47039 * 70.20064 * 1 2 3 32 32 H 1.09007 * 109.46809 * 190.20098 * 1 2 3 33 33 H 1.09000 * 109.47276 * 239.99978 * 2 1 3 34 34 H 1.08996 * 109.46921 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.46896 * 300.00084 * 3 2 1 36 36 H 1.09000 * 109.47053 * 59.99842 * 3 2 1 37 37 H 1.09006 * 109.47012 * 95.79385 * 7 6 4 38 38 H 1.08999 * 109.47624 * 215.79722 * 7 6 4 39 39 H 1.09004 * 109.46958 * 335.80131 * 7 6 4 40 40 H 1.08995 * 109.47331 * 209.99794 * 8 6 4 41 41 H 1.08996 * 109.47204 * 330.00413 * 8 6 4 42 42 H 1.08994 * 109.75833 * 242.35708 * 12 11 9 43 43 H 1.09002 * 109.75683 * 3.11372 * 12 11 9 44 44 H 1.08999 * 109.38227 * 297.22997 * 13 12 11 45 45 H 1.08991 * 109.16772 * 177.73131 * 13 12 11 46 46 H 1.09001 * 110.78297 * 196.64615 * 16 14 13 47 47 H 1.08992 * 110.78292 * 319.89656 * 16 14 13 48 48 H 1.08996 * 109.90695 * 142.23582 * 17 16 14 49 49 H 1.09003 * 109.90155 * 263.29438 * 17 16 14 50 50 H 0.96992 * 120.00193 * 180.02562 * 22 21 19 51 51 H 1.08999 * 109.22644 * 352.82598 * 29 11 9 52 52 H 1.08996 * 109.23083 * 112.23409 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.6453 -0.0960 2.0776 6 7 1.8054 -2.0296 1.3868 7 6 1.1593 -2.7936 0.3167 8 6 2.2047 -2.6997 2.6269 9 6 1.0693 -2.6436 3.6162 10 8 0.0288 -2.0981 3.3149 11 7 1.2097 -3.2006 4.8354 12 6 2.4575 -3.8755 5.2265 13 6 2.9825 -3.1895 6.4929 14 6 1.9330 -3.2431 7.6062 15 1 1.7946 -4.2442 8.0148 16 6 2.3796 -2.2056 8.6825 17 6 1.9373 -0.8624 8.0602 18 7 0.8783 -1.1656 7.0922 19 6 0.2431 -0.2533 6.2925 20 1 -0.5337 -0.5770 5.6156 21 6 0.5976 1.0875 6.3520 22 7 1.5445 1.4818 7.1767 23 14 -0.2693 2.3321 5.2617 24 1 -1.4566 2.8707 5.9725 25 1 0.6622 3.4434 4.9415 26 1 -0.7027 1.6716 4.0043 27 6 0.6120 -2.6051 7.1377 28 1 -0.1483 -2.7909 7.8964 29 6 0.1213 -3.1621 5.8192 30 1 -0.3633 0.6633 0.7850 31 1 -0.3633 0.3481 -0.9669 32 1 -0.3633 -1.0115 0.1820 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.9209 -3.2748 -0.2970 38 1 0.5109 -3.5534 0.7531 39 1 0.5655 -2.1211 -0.3023 40 1 2.4507 -3.7401 2.4147 41 1 3.0770 -2.1983 3.0461 42 1 2.2592 -4.9278 5.4296 43 1 3.1915 -3.7860 4.4256 44 1 3.2169 -2.1486 6.2697 45 1 3.8869 -3.6980 6.8266 46 1 1.8650 -2.3822 9.6270 47 1 3.4603 -2.2335 8.8216 48 1 1.5627 -0.1981 8.8389 49 1 2.7788 -0.3958 7.5480 50 1 1.7920 2.4187 7.2186 51 1 -0.6830 -2.5317 5.4402 52 1 -0.2575 -4.1721 5.9753 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222798980.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:33 Heat of formation + Delta-G solvation = -54.227609 kcal Electronic energy + Delta-G solvation = -32708.476069 eV Core-core repulsion = 28708.192465 eV Total energy + Delta-G solvation = -4000.283604 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.68660 -40.92852 -39.46992 -36.67090 -36.43766 -35.53371 -34.67836 -32.87418 -31.35686 -30.07056 -29.48971 -28.06880 -27.48804 -26.53084 -25.44522 -23.92943 -23.66742 -21.77284 -21.28805 -20.02178 -19.60111 -18.57342 -18.36572 -18.15855 -17.44171 -16.93312 -16.45494 -16.33871 -16.14044 -15.96299 -15.55952 -15.44007 -15.08681 -14.94236 -14.36641 -14.26026 -14.08867 -13.79832 -13.78190 -13.69758 -13.36345 -13.27312 -13.17282 -13.10805 -12.99354 -12.85310 -12.76659 -12.67498 -12.56177 -12.35342 -12.14591 -12.11055 -11.99076 -11.73041 -11.41213 -11.29628 -11.17225 -10.91279 -10.77382 -10.70297 -9.66720 -9.45959 -8.83396 -7.89381 -5.17877 1.22426 1.28844 1.37302 1.45232 1.74079 1.94539 2.35110 2.41504 3.30254 3.47800 3.48555 3.70947 3.84778 3.87489 3.92978 3.97314 4.09841 4.13231 4.22020 4.28303 4.30834 4.43242 4.47662 4.51045 4.60543 4.61898 4.66484 4.71310 4.71834 4.73774 4.81193 4.85764 4.89640 4.92772 4.93591 5.02201 5.14099 5.15602 5.20834 5.27477 5.31051 5.40770 5.48563 5.65340 5.71571 5.73846 5.80648 6.20369 6.31200 6.58391 7.12111 7.13956 7.33294 7.81752 8.41551 9.20644 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010677 B = 0.005678 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.939431 B = 4929.973762 C = 6561.112332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C -0.133 4.133 4 C 0.502 3.498 5 O -0.590 6.590 6 N -0.601 5.601 7 C 0.064 3.936 8 C 0.103 3.897 9 C 0.492 3.508 10 O -0.581 6.581 11 N -0.598 5.598 12 C 0.108 3.892 13 C -0.122 4.122 14 C -0.082 4.082 15 H 0.128 0.872 16 C -0.130 4.130 17 C 0.187 3.813 18 N -0.604 5.604 19 C -0.195 4.195 20 H 0.062 0.938 21 C -0.064 4.064 22 N -0.947 5.947 23 Si 0.949 3.051 24 H -0.278 1.278 25 H -0.297 1.297 26 H -0.294 1.294 27 C 0.139 3.861 28 H 0.028 0.972 29 C 0.120 3.880 30 H 0.019 0.981 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.142 0.858 34 H 0.056 0.944 35 H 0.096 0.904 36 H 0.019 0.981 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.155 0.845 41 H 0.091 0.909 42 H 0.114 0.886 43 H 0.096 0.904 44 H 0.024 0.976 45 H 0.103 0.897 46 H 0.069 0.931 47 H 0.080 0.920 48 H -0.005 1.005 49 H 0.002 0.998 50 H 0.240 0.760 51 H 0.045 0.955 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.782 -18.571 -13.686 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.125 4.125 3 C -0.191 4.191 4 C 0.292 3.708 5 O -0.470 6.470 6 N -0.333 5.333 7 C -0.077 4.077 8 C -0.023 4.023 9 C 0.280 3.720 10 O -0.461 6.461 11 N -0.330 5.330 12 C -0.013 4.013 13 C -0.160 4.160 14 C -0.101 4.101 15 H 0.146 0.854 16 C -0.168 4.168 17 C 0.062 3.938 18 N -0.329 5.329 19 C -0.325 4.325 20 H 0.080 0.920 21 C -0.256 4.256 22 N -0.598 5.598 23 Si 0.781 3.219 24 H -0.205 1.205 25 H -0.224 1.224 26 H -0.221 1.221 27 C 0.033 3.967 28 H 0.045 0.955 29 C -0.004 4.004 30 H 0.038 0.962 31 H 0.123 0.877 32 H 0.094 0.906 33 H 0.159 0.841 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.038 0.962 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.173 0.827 41 H 0.109 0.891 42 H 0.132 0.868 43 H 0.115 0.885 44 H 0.043 0.957 45 H 0.121 0.879 46 H 0.087 0.913 47 H 0.098 0.902 48 H 0.013 0.987 49 H 0.020 0.980 50 H 0.050 0.950 51 H 0.064 0.936 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.549 -17.760 -13.471 22.572 hybrid contribution -0.651 2.028 0.210 2.140 sum 2.898 -15.732 -13.261 20.778 Atomic orbital electron populations 1.21974 0.92367 1.02877 1.03153 1.21366 0.97856 0.97268 0.96011 1.21640 1.01267 0.94424 1.01734 1.21625 0.78144 0.82075 0.88936 1.90743 1.43029 1.66602 1.46580 1.47563 1.60492 1.08466 1.16745 1.22384 0.98802 0.97079 0.89430 1.21373 0.94890 1.01527 0.84547 1.21622 0.89679 0.77080 0.83661 1.90636 1.31932 1.44773 1.78770 1.48015 1.16683 1.55730 1.12618 1.22126 0.84494 0.97365 0.97334 1.21884 0.98893 1.00030 0.95172 1.22434 0.93553 0.98862 0.95235 0.85398 1.23038 1.01056 0.94681 0.98067 1.20807 0.89774 0.93306 0.89948 1.44281 1.42145 1.02410 1.44037 1.18965 1.12682 0.87681 1.13158 0.92033 1.25242 1.00448 0.98681 1.01237 1.70135 1.34035 1.14269 1.41368 0.85470 0.77941 0.79691 0.78802 1.20451 1.22426 1.22088 1.21095 0.96780 0.84066 0.94785 0.95503 1.21208 0.89826 1.00768 0.88575 0.96151 0.87690 0.90627 0.84064 0.92510 0.88535 0.96171 0.88777 0.90991 0.88632 0.82731 0.89122 0.86816 0.88533 0.95719 0.87880 0.91270 0.90174 0.98727 0.97965 0.95032 0.93617 0.88363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 8.68 71.98 0.62 -3.06 16 2 C -0.10 -2.69 2.42 -11.54 -0.03 -2.72 16 3 C -0.13 -3.75 8.48 71.98 0.61 -3.14 16 4 C 0.50 18.00 6.98 87.66 0.61 18.61 16 5 O -0.59 -28.69 15.54 -3.04 -0.05 -28.74 16 6 N -0.60 -17.17 2.36 -851.13 -2.01 -19.18 16 7 C 0.06 1.07 9.73 127.77 1.24 2.31 16 8 C 0.10 2.99 4.32 85.63 0.37 3.36 16 9 C 0.49 18.75 7.78 87.66 0.68 19.43 16 10 O -0.58 -27.87 15.89 -3.03 -0.05 -27.92 16 11 N -0.60 -20.12 2.96 -822.11 -2.43 -22.56 16 12 C 0.11 2.47 6.39 86.35 0.55 3.02 16 13 C -0.12 -3.43 5.05 30.73 0.16 -3.27 16 14 C -0.08 -2.43 3.68 -9.37 -0.03 -2.46 16 15 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 16 C -0.13 -4.63 6.32 32.15 0.20 -4.42 16 17 C 0.19 9.71 4.59 86.86 0.40 10.11 16 18 N -0.60 -32.32 3.13 -676.01 -2.12 -34.44 16 19 C -0.19 -12.17 9.69 84.03 0.81 -11.35 16 20 H 0.06 4.01 6.53 -2.91 -0.02 3.99 16 21 C -0.06 -4.15 5.49 84.86 0.47 -3.69 16 22 N -0.95 -63.37 10.31 21.65 0.22 -63.15 16 23 Si 0.95 55.21 29.55 68.60 2.03 57.24 16 24 H -0.28 -15.24 7.11 99.48 0.71 -14.54 16 25 H -0.30 -17.36 7.11 99.48 0.71 -16.65 16 26 H -0.29 -17.65 7.11 99.48 0.71 -16.95 16 27 C 0.14 5.55 3.00 44.78 0.13 5.69 16 28 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 29 C 0.12 4.42 5.67 85.78 0.49 4.91 16 30 H 0.02 0.67 8.11 -2.38 -0.02 0.65 16 31 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.08 1.83 5.41 -2.38 -0.01 1.82 16 33 H 0.14 2.24 7.73 -2.39 -0.02 2.22 16 34 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.02 0.72 8.04 -2.39 -0.02 0.70 16 37 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.07 1.20 8.11 -2.39 -0.02 1.18 16 39 H 0.10 1.44 4.11 -2.39 -0.01 1.43 16 40 H 0.16 2.59 7.82 -2.39 -0.02 2.57 16 41 H 0.09 3.06 7.02 -2.39 -0.02 3.04 16 42 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.10 1.80 6.02 -2.39 -0.01 1.79 16 44 H 0.02 0.99 6.84 -2.39 -0.02 0.97 16 45 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.08 2.52 7.98 -2.39 -0.02 2.50 16 48 H -0.01 -0.33 7.59 -2.39 -0.02 -0.34 16 49 H 0.00 0.13 6.96 -2.39 -0.02 0.11 16 50 H 0.24 15.84 8.31 -92.71 -0.77 15.07 16 51 H 0.05 2.13 5.57 -2.39 -0.01 2.11 16 52 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -99.09 392.91 3.79 -95.30 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 0.90 Total: 10.12 kcal Atomic # 6 Polarization: 26.02 SS G_CDS: 7.29 Total: 33.31 kcal Atomic # 7 Polarization: -132.98 SS G_CDS: -6.34 Total: -139.32 kcal Atomic # 8 Polarization: -56.56 SS G_CDS: -0.10 Total: -56.66 kcal Atomic # 14 Polarization: 55.21 SS G_CDS: 2.03 Total: 57.24 kcal Total: -99.09 3.79 -95.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222798980.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.076 kcal (2) G-P(sol) polarization free energy of solvation -99.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds