Wall clock time and date at job start Tue Mar 31 2020 19:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 H 1.09003 * 115.55421 * 29.33475 * 3 2 1 5 5 C 1.53003 * 117.49939 * 243.62108 * 3 2 1 6 6 C 1.53001 * 60.00180 * 252.51294 * 5 3 2 7 7 H 1.09008 * 117.49958 * 107.48669 * 6 5 3 8 8 C 1.50697 * 117.50270 * 252.50928 * 6 5 3 9 9 O 1.21284 * 119.99964 * 68.61866 * 8 6 5 10 10 N 1.34776 * 120.00292 * 248.61969 * 8 6 5 11 11 C 1.46500 * 120.00026 * 179.97438 * 10 8 6 12 12 C 1.52999 * 109.46829 * 180.02562 * 11 10 8 13 13 C 1.53120 * 109.52136 * 294.67857 * 12 11 10 14 14 C 1.53034 * 109.27840 * 182.44205 * 13 12 11 15 15 N 1.46851 * 109.52444 * 59.18260 * 14 13 12 16 16 C 1.46901 * 110.99996 * 174.15659 * 15 14 13 17 17 C 1.50693 * 109.47631 * 294.21001 * 16 15 14 18 18 O 1.21300 * 119.99663 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00173 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99956 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00084 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99806 * 179.97438 * 20 19 17 23 23 N 1.31406 * 120.00166 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99885 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47368 * 59.99989 * 24 22 20 26 26 H 1.48494 * 109.47292 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47437 * 300.00444 * 24 22 20 28 28 C 1.46847 * 111.19491 * 298.25822 * 15 14 13 29 29 C 1.53039 * 109.52397 * 61.74234 * 28 15 14 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 33 33 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 34 34 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 35 35 H 1.08993 * 117.49852 * 0.02562 * 5 3 2 36 36 H 1.09005 * 117.49786 * 145.02616 * 5 3 2 37 37 H 0.96996 * 119.99798 * 0.02562 * 10 8 6 38 38 H 1.09003 * 109.47426 * 300.00148 * 11 10 8 39 39 H 1.08994 * 109.47145 * 60.00199 * 11 10 8 40 40 H 1.09000 * 109.52770 * 54.87129 * 12 11 10 41 41 H 1.09001 * 109.50558 * 302.38805 * 13 12 11 42 42 H 1.09000 * 109.49894 * 62.50441 * 13 12 11 43 43 H 1.09001 * 109.46810 * 299.16589 * 14 13 12 44 44 H 1.09005 * 109.46335 * 179.19791 * 14 13 12 45 45 H 1.09007 * 109.46836 * 54.21593 * 16 15 14 46 46 H 1.09000 * 109.46618 * 174.20550 * 16 15 14 47 47 H 0.96996 * 119.99847 * 359.97438 * 19 17 16 48 48 H 0.97002 * 120.00363 * 179.97438 * 23 22 20 49 49 H 1.08994 * 109.46262 * 301.71780 * 28 15 14 50 50 H 1.08998 * 109.44908 * 181.74944 * 28 15 14 51 51 H 1.08993 * 109.49906 * 180.87838 * 29 28 15 52 52 H 1.09002 * 109.50071 * 60.76041 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3883 2.1715 0.4818 5 6 2.8439 1.9077 -1.2158 6 6 3.5501 1.6580 0.1183 7 1 4.1804 0.7720 0.1961 8 6 4.0228 2.8621 0.8915 9 8 3.2157 3.6167 1.3915 10 7 5.3424 3.1003 1.0273 11 6 5.8018 4.2711 1.7785 12 6 7.3314 4.3079 1.7802 13 6 7.8713 3.1020 2.5541 14 6 9.3989 3.1768 2.6045 15 7 9.8078 4.4252 3.2609 16 6 11.2638 4.4675 3.4514 17 6 11.6745 3.3931 4.4250 18 8 10.8367 2.6635 4.9119 19 7 12.9728 3.2422 4.7538 20 6 13.3465 2.2644 5.6392 21 1 12.6005 1.6153 6.0734 22 6 14.6851 2.1085 5.9778 23 7 15.5927 2.8986 5.4498 24 14 15.1942 0.7767 7.1846 25 1 14.8024 -0.5521 6.6498 26 1 16.6661 0.8191 7.3766 27 1 14.5187 1.0046 8.4873 28 6 9.3409 5.5975 2.5098 29 6 7.8115 5.5950 2.4565 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 3.0092 1.1862 -2.0159 36 1 2.7212 2.9429 -1.5343 37 1 5.9878 2.4970 0.6270 38 1 5.4175 5.1772 1.3100 39 1 5.4383 4.2103 2.8042 40 1 7.6977 4.2771 0.7540 41 1 7.4726 3.1125 3.5685 42 1 7.5683 2.1827 2.0529 43 1 9.7975 3.1523 1.5903 44 1 9.7858 2.3271 3.1672 45 1 11.7603 4.3007 2.4954 46 1 11.5505 5.4429 3.8443 47 1 13.6428 3.8249 4.3635 48 1 16.5271 2.7900 5.6865 49 1 9.7398 5.5618 1.4961 50 1 9.6856 6.5059 3.0038 51 1 7.4659 6.4568 1.8857 52 1 7.4120 5.6447 3.4695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224599765.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:15 Heat of formation + Delta-G solvation = -65.937867 kcal Electronic energy + Delta-G solvation = -28655.514544 eV Core-core repulsion = 24654.723146 eV Total energy + Delta-G solvation = -4000.791399 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.34937 -39.31133 -37.93348 -37.28717 -35.41190 -33.92276 -32.94861 -32.35600 -31.23627 -30.68234 -28.56167 -26.27376 -24.69057 -24.16384 -23.59278 -23.05968 -21.63064 -20.91939 -20.35706 -19.59929 -19.18134 -17.85562 -17.55902 -16.29790 -15.97698 -15.68932 -15.50059 -15.06802 -14.96774 -14.79287 -14.58941 -14.43369 -14.14008 -13.89695 -13.78703 -13.57186 -13.03393 -12.95834 -12.85558 -12.65447 -12.50547 -12.35626 -12.20170 -11.84431 -11.72018 -11.49803 -11.42535 -11.37402 -11.08376 -11.01463 -10.73335 -10.67915 -10.47219 -10.44589 -10.41955 -10.25125 -10.20787 -9.96746 -9.45417 -9.25374 -8.41849 -7.97174 -7.81891 -6.41505 -3.82331 2.26762 2.89334 3.19807 3.25592 3.29876 3.46337 3.90767 4.00361 4.22657 4.24849 4.37501 4.42354 4.57378 4.72354 4.74434 4.77823 4.82677 4.94562 5.04266 5.08018 5.24403 5.25821 5.28729 5.33002 5.38383 5.43740 5.49973 5.52736 5.56356 5.60040 5.66209 5.69860 5.75009 5.75997 5.80022 5.84628 5.88709 5.99231 6.02088 6.05624 6.17354 6.23744 6.28912 6.45216 6.51725 7.28149 7.32805 7.46060 7.55113 8.01821 8.06658 8.62313 9.18331 9.54964 10.06961 10.76148 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017187 B = 0.001763 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.717418 B =15875.196554 C =17103.137051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.117 4.117 4 H 0.118 0.882 5 C -0.149 4.149 6 C -0.193 4.193 7 H 0.124 0.876 8 C 0.542 3.458 9 O -0.543 6.543 10 N -0.723 5.723 11 C 0.125 3.875 12 C -0.101 4.101 13 C -0.106 4.106 14 C 0.052 3.948 15 N -0.515 5.515 16 C 0.046 3.954 17 C 0.444 3.556 18 O -0.577 6.577 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.056 3.944 29 C -0.106 4.106 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.402 0.598 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.020 0.980 44 H 0.104 0.896 45 H 0.046 0.954 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.028 0.972 50 H 0.075 0.925 51 H 0.066 0.934 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.009 0.586 -15.617 26.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.136 4.136 4 H 0.136 0.864 5 C -0.186 4.186 6 C -0.214 4.214 7 H 0.142 0.858 8 C 0.328 3.672 9 O -0.421 6.421 10 N -0.375 5.375 11 C 0.002 3.998 12 C -0.120 4.120 13 C -0.144 4.144 14 C -0.075 4.075 15 N -0.240 5.240 16 C -0.085 4.085 17 C 0.229 3.771 18 O -0.462 6.462 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.072 4.072 29 C -0.144 4.144 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.122 0.878 36 H 0.117 0.883 37 H 0.236 0.764 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.038 0.962 44 H 0.122 0.878 45 H 0.064 0.936 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.046 0.954 50 H 0.093 0.907 51 H 0.085 0.915 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -22.143 0.671 -14.417 26.431 hybrid contribution 1.754 -0.505 -0.623 1.929 sum -20.389 0.166 -15.040 25.336 Atomic orbital electron populations 1.21742 0.95124 1.01706 1.02153 1.21166 0.96346 0.93561 1.02252 1.22485 0.91320 0.98803 1.00948 0.86418 1.23102 1.02095 1.03129 0.90313 1.22326 0.97931 0.99039 1.02114 0.85837 1.19656 0.82234 0.85536 0.79779 1.90696 1.53996 1.48758 1.48639 1.45966 1.06947 1.28850 1.55691 1.21448 0.93936 0.87703 0.96701 1.21495 0.93213 0.97151 1.00113 1.21610 0.95681 0.96088 1.01028 1.22247 0.94855 0.94284 0.96121 1.61499 1.11596 1.01750 1.49127 1.21833 0.88100 1.00143 0.98420 1.19758 0.83342 0.87519 0.86478 1.90483 1.50520 1.47977 1.57174 1.41865 1.05972 1.31847 1.40426 1.19650 0.92741 1.10617 1.19882 0.87981 1.25246 0.95494 0.98556 0.98596 1.69602 1.02008 1.38596 1.44150 0.85927 0.77186 0.80674 0.80480 1.19957 1.20998 1.19906 1.22079 0.95059 0.94194 0.95901 1.21521 0.95309 0.95958 1.01604 0.92565 0.92449 0.92551 0.91294 0.91628 0.87776 0.88349 0.76378 0.91634 0.91125 0.91006 0.90571 0.92153 0.96229 0.87792 0.93629 0.89391 0.77515 0.91850 0.95352 0.90686 0.91510 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.87 37.16 0.37 -0.47 16 2 C -0.10 -0.58 6.22 -26.73 -0.17 -0.75 16 3 C -0.12 -0.90 5.25 -90.62 -0.48 -1.38 16 4 H 0.12 1.12 7.60 -51.93 -0.39 0.73 16 5 C -0.15 -0.99 9.88 -26.73 -0.26 -1.26 16 6 C -0.19 -1.53 5.91 -91.77 -0.54 -2.08 16 7 H 0.12 0.77 8.14 -51.92 -0.42 0.34 16 8 C 0.54 5.93 7.61 -10.99 -0.08 5.85 16 9 O -0.54 -8.06 16.26 5.55 0.09 -7.97 16 10 N -0.72 -6.72 5.31 -60.30 -0.32 -7.04 16 11 C 0.13 1.27 5.07 -4.04 -0.02 1.25 16 12 C -0.10 -1.01 2.29 -90.50 -0.21 -1.22 16 13 C -0.11 -1.31 5.22 -26.65 -0.14 -1.45 16 14 C 0.05 0.82 5.11 -3.83 -0.02 0.80 16 15 N -0.52 -8.35 4.40 -236.11 -1.04 -9.39 16 16 C 0.05 0.82 5.45 -4.98 -0.03 0.79 16 17 C 0.44 10.34 7.46 -10.99 -0.08 10.25 16 18 O -0.58 -15.29 13.90 5.54 0.08 -15.21 16 19 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 20 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 21 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.41 13.05 55.50 0.72 -23.68 16 24 Si 0.93 20.98 29.55 -169.99 -5.02 15.95 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 C 0.06 0.69 5.46 -3.83 -0.02 0.67 16 29 C -0.11 -1.11 5.38 -26.65 -0.14 -1.26 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.33 7.88 -51.93 -0.41 -0.08 16 35 H 0.10 0.50 8.03 -51.93 -0.42 0.09 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.40 2.88 7.69 -40.82 -0.31 2.57 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.06 0.64 7.27 -51.93 -0.38 0.26 16 43 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.10 2.02 5.78 -51.93 -0.30 1.72 16 45 H 0.05 0.74 8.12 -51.92 -0.42 0.32 16 46 H 0.09 1.41 7.99 -51.93 -0.41 1.00 16 47 H 0.39 9.43 7.90 -40.82 -0.32 9.10 16 48 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 49 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.07 0.87 8.01 -51.93 -0.42 0.46 16 51 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 52 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 416.15 15.07 6.27 6.27 Total: -1.00 -32.64 416.15 -10.56 -43.20 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -9.22 Total: 10.27 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -2.07 Total: 1.83 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.69 Total: -54.34 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: 0.17 Total: -23.18 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.64 -10.56 -43.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224599765.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.736 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds