Wall clock time and date at job start Tue Mar 31 2020 19:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 H 1.09003 * 115.55421 * 29.33475 * 3 2 1 5 5 C 1.53003 * 117.49939 * 243.62108 * 3 2 1 6 6 C 1.53001 * 60.00180 * 252.51294 * 5 3 2 7 7 H 1.09008 * 117.49958 * 107.48669 * 6 5 3 8 8 C 1.50697 * 117.50270 * 252.50928 * 6 5 3 9 9 O 1.21284 * 119.99964 * 68.61866 * 8 6 5 10 10 N 1.34776 * 120.00292 * 248.61969 * 8 6 5 11 11 C 1.46500 * 120.00026 * 179.97438 * 10 8 6 12 12 C 1.52999 * 109.46829 * 180.02562 * 11 10 8 13 13 C 1.53120 * 109.52136 * 294.67857 * 12 11 10 14 14 C 1.53034 * 109.27840 * 182.44205 * 13 12 11 15 15 N 1.46851 * 109.52444 * 59.18260 * 14 13 12 16 16 C 1.46901 * 110.99996 * 174.15659 * 15 14 13 17 17 C 1.50693 * 109.47631 * 294.21001 * 16 15 14 18 18 O 1.21300 * 119.99663 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00173 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99956 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00084 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99806 * 179.97438 * 20 19 17 23 23 N 1.31406 * 120.00166 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99885 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47368 * 59.99989 * 24 22 20 26 26 H 1.48494 * 109.47292 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47437 * 300.00444 * 24 22 20 28 28 C 1.46847 * 111.19491 * 298.25822 * 15 14 13 29 29 C 1.53039 * 109.52397 * 61.74234 * 28 15 14 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 33 33 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 34 34 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 35 35 H 1.08993 * 117.49852 * 0.02562 * 5 3 2 36 36 H 1.09005 * 117.49786 * 145.02616 * 5 3 2 37 37 H 0.96996 * 119.99798 * 0.02562 * 10 8 6 38 38 H 1.09003 * 109.47426 * 300.00148 * 11 10 8 39 39 H 1.08994 * 109.47145 * 60.00199 * 11 10 8 40 40 H 1.09000 * 109.52770 * 54.87129 * 12 11 10 41 41 H 1.09001 * 109.50558 * 302.38805 * 13 12 11 42 42 H 1.09000 * 109.49894 * 62.50441 * 13 12 11 43 43 H 1.09001 * 109.46810 * 299.16589 * 14 13 12 44 44 H 1.09005 * 109.46335 * 179.19791 * 14 13 12 45 45 H 1.09007 * 109.46836 * 54.21593 * 16 15 14 46 46 H 1.09000 * 109.46618 * 174.20550 * 16 15 14 47 47 H 0.96996 * 119.99847 * 359.97438 * 19 17 16 48 48 H 0.97002 * 120.00363 * 179.97438 * 23 22 20 49 49 H 1.08994 * 109.46262 * 301.71780 * 28 15 14 50 50 H 1.08998 * 109.44908 * 181.74944 * 28 15 14 51 51 H 1.08993 * 109.49906 * 180.87838 * 29 28 15 52 52 H 1.09002 * 109.50071 * 60.76041 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3883 2.1715 0.4818 5 6 2.8439 1.9077 -1.2158 6 6 3.5501 1.6580 0.1183 7 1 4.1804 0.7720 0.1961 8 6 4.0228 2.8621 0.8915 9 8 3.2157 3.6167 1.3915 10 7 5.3424 3.1003 1.0273 11 6 5.8018 4.2711 1.7785 12 6 7.3314 4.3079 1.7802 13 6 7.8713 3.1020 2.5541 14 6 9.3989 3.1768 2.6045 15 7 9.8078 4.4252 3.2609 16 6 11.2638 4.4675 3.4514 17 6 11.6745 3.3931 4.4250 18 8 10.8367 2.6635 4.9119 19 7 12.9728 3.2422 4.7538 20 6 13.3465 2.2644 5.6392 21 1 12.6005 1.6153 6.0734 22 6 14.6851 2.1085 5.9778 23 7 15.5927 2.8986 5.4498 24 14 15.1942 0.7767 7.1846 25 1 14.8024 -0.5521 6.6498 26 1 16.6661 0.8191 7.3766 27 1 14.5187 1.0046 8.4873 28 6 9.3409 5.5975 2.5098 29 6 7.8115 5.5950 2.4565 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 3.0092 1.1862 -2.0159 36 1 2.7212 2.9429 -1.5343 37 1 5.9878 2.4970 0.6270 38 1 5.4175 5.1772 1.3100 39 1 5.4383 4.2103 2.8042 40 1 7.6977 4.2771 0.7540 41 1 7.4726 3.1125 3.5685 42 1 7.5683 2.1827 2.0529 43 1 9.7975 3.1523 1.5903 44 1 9.7858 2.3271 3.1672 45 1 11.7603 4.3007 2.4954 46 1 11.5505 5.4429 3.8443 47 1 13.6428 3.8249 4.3635 48 1 16.5271 2.7900 5.6865 49 1 9.7398 5.5618 1.4961 50 1 9.6856 6.5059 3.0038 51 1 7.4659 6.4568 1.8857 52 1 7.4120 5.6447 3.4695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224599765.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:14 Heat of formation + Delta-G solvation = -88.273346 kcal Electronic energy + Delta-G solvation = -28656.483083 eV Core-core repulsion = 24654.723146 eV Total energy + Delta-G solvation = -4001.759938 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.19526 -40.61467 -39.38282 -38.07786 -36.51548 -35.83597 -34.00724 -33.23784 -32.87303 -31.72881 -29.77773 -27.63271 -26.08201 -24.93700 -24.45176 -24.10422 -22.61485 -21.55207 -21.14887 -20.99320 -20.51552 -19.85740 -18.31497 -17.72556 -17.08550 -16.80638 -16.53409 -16.48343 -16.17713 -15.76096 -15.63176 -15.42176 -15.31587 -15.17394 -15.03682 -14.84664 -14.25476 -13.88870 -13.66924 -13.53196 -13.50959 -13.41345 -13.24049 -13.08544 -12.98347 -12.84513 -12.56155 -12.42507 -12.19674 -12.13699 -12.08979 -11.93234 -11.69161 -11.54202 -11.45921 -11.25303 -11.24011 -11.04607 -10.75664 -10.22411 -10.10163 -9.98081 -9.12363 -8.45347 -5.93842 1.39710 1.41578 1.46650 1.52261 2.07569 2.14403 2.29099 2.81568 2.85302 3.21556 3.41303 3.62893 3.68939 3.77117 3.79534 3.86337 3.92578 4.19297 4.24815 4.28081 4.32495 4.35466 4.41702 4.48273 4.51306 4.55832 4.57281 4.60936 4.66430 4.71849 4.77943 4.87341 4.90895 4.93613 4.99454 5.03432 5.08681 5.15463 5.22149 5.23146 5.25848 5.28866 5.38771 5.41582 5.48857 5.51759 5.93376 6.14451 6.33372 6.52867 6.62660 7.14550 7.22153 7.58590 8.14849 8.71769 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017187 B = 0.001763 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.717418 B =15875.196554 C =17103.137051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.127 4.127 4 H 0.092 0.908 5 C -0.132 4.132 6 C -0.197 4.197 7 H 0.146 0.854 8 C 0.535 3.465 9 O -0.590 6.590 10 N -0.713 5.713 11 C 0.132 3.868 12 C -0.085 4.085 13 C -0.099 4.099 14 C 0.055 3.945 15 N -0.538 5.538 16 C 0.058 3.942 17 C 0.441 3.559 18 O -0.614 6.614 19 N -0.575 5.575 20 C -0.333 4.333 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.991 3.009 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.274 1.274 28 C 0.056 3.944 29 C -0.104 4.104 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.131 0.869 36 H 0.090 0.910 37 H 0.414 0.586 38 H 0.069 0.931 39 H 0.050 0.950 40 H 0.093 0.907 41 H 0.048 0.952 42 H 0.078 0.922 43 H 0.036 0.964 44 H 0.058 0.942 45 H 0.066 0.934 46 H 0.108 0.892 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.046 0.954 50 H 0.083 0.917 51 H 0.094 0.906 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.880 0.537 -17.730 27.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.129 4.129 3 C -0.145 4.145 4 H 0.110 0.890 5 C -0.169 4.169 6 C -0.218 4.218 7 H 0.164 0.836 8 C 0.323 3.677 9 O -0.471 6.471 10 N -0.365 5.365 11 C 0.008 3.992 12 C -0.104 4.104 13 C -0.137 4.137 14 C -0.073 4.073 15 N -0.263 5.263 16 C -0.073 4.073 17 C 0.228 3.772 18 O -0.500 6.500 19 N -0.212 5.212 20 C -0.463 4.463 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.199 1.199 28 C -0.071 4.071 29 C -0.142 4.142 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.149 0.851 36 H 0.109 0.891 37 H 0.251 0.749 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.111 0.889 41 H 0.067 0.933 42 H 0.096 0.904 43 H 0.054 0.946 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.126 0.874 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.064 0.936 50 H 0.102 0.898 51 H 0.113 0.887 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.988 0.629 -16.559 27.533 hybrid contribution 1.664 -0.456 0.035 1.726 sum -20.324 0.173 -16.525 26.195 Atomic orbital electron populations 1.21748 0.95035 1.02210 1.01796 1.21161 0.96426 0.92395 1.02895 1.22476 0.90894 0.99339 1.01827 0.88970 1.23189 1.00199 1.03381 0.90177 1.22382 0.98290 0.98421 1.02735 0.83615 1.20221 0.82214 0.85884 0.79343 1.90675 1.55177 1.50565 1.50684 1.45907 1.06879 1.28690 1.54997 1.21308 0.93889 0.88242 0.95771 1.21366 0.92745 0.95689 1.00620 1.21530 0.93557 0.98343 1.00245 1.22123 0.96645 0.92609 0.95914 1.61467 1.10501 1.03340 1.51037 1.21702 0.89574 0.98470 0.97536 1.20825 0.82287 0.87830 0.86253 1.90464 1.51378 1.49603 1.58563 1.41933 1.06868 1.31809 1.40636 1.19614 0.93026 1.11936 1.21700 0.90402 1.26001 0.94964 1.00402 0.99818 1.69662 1.02339 1.39421 1.44707 0.85013 0.77356 0.78000 0.78108 1.19692 1.19479 1.19907 1.22192 0.96001 0.92601 0.96345 1.21538 0.94122 0.97230 1.01324 0.91582 0.93518 0.92268 0.91618 0.89919 0.85133 0.89141 0.74866 0.91274 0.93183 0.88863 0.93292 0.90367 0.94553 0.92388 0.91608 0.87409 0.77076 0.91348 0.93559 0.89817 0.88719 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.87 71.98 0.71 -0.85 16 2 C -0.09 -0.98 6.22 30.60 0.19 -0.79 16 3 C -0.13 -1.86 5.25 -10.79 -0.06 -1.92 16 4 H 0.09 1.84 7.60 -2.39 -0.02 1.83 16 5 C -0.13 -1.50 9.88 30.60 0.30 -1.19 16 6 C -0.20 -2.84 5.91 -11.54 -0.07 -2.91 16 7 H 0.15 1.43 8.14 -2.38 -0.02 1.41 16 8 C 0.54 11.42 7.61 87.66 0.67 12.08 16 9 O -0.59 -17.88 16.26 -3.04 -0.05 -17.93 16 10 N -0.71 -12.23 5.31 -463.07 -2.46 -14.69 16 11 C 0.13 2.51 5.07 86.38 0.44 2.95 16 12 C -0.09 -1.52 2.29 -10.71 -0.02 -1.55 16 13 C -0.10 -2.37 5.22 30.65 0.16 -2.21 16 14 C 0.05 1.67 5.11 86.32 0.44 2.12 16 15 N -0.54 -16.90 4.40 -900.93 -3.96 -20.86 16 16 C 0.06 2.00 5.45 85.55 0.47 2.47 16 17 C 0.44 20.95 7.46 87.65 0.65 21.60 16 18 O -0.61 -33.83 13.90 -3.09 -0.04 -33.87 16 19 N -0.57 -29.51 5.29 -306.98 -1.62 -31.14 16 20 C -0.33 -18.95 9.68 84.04 0.81 -18.14 16 21 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 22 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 23 N -0.92 -49.60 13.05 21.66 0.28 -49.32 16 24 Si 0.99 43.01 29.55 68.60 2.03 45.04 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 28 C 0.06 1.23 5.46 86.33 0.47 1.70 16 29 C -0.10 -1.95 5.38 30.65 0.16 -1.78 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 34 H 0.08 0.61 7.88 -2.39 -0.02 0.59 16 35 H 0.13 0.80 8.03 -2.39 -0.02 0.79 16 36 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.41 4.95 7.69 -92.71 -0.71 4.23 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.08 1.55 7.27 -2.39 -0.02 1.54 16 43 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.06 2.32 5.78 -2.38 -0.01 2.31 16 45 H 0.07 2.01 8.12 -2.38 -0.02 1.99 16 46 H 0.11 3.27 7.99 -2.39 -0.02 3.25 16 47 H 0.40 19.27 7.90 -92.71 -0.73 18.54 16 48 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 49 H 0.05 0.88 8.14 -2.39 -0.02 0.87 16 50 H 0.08 1.71 8.01 -2.39 -0.02 1.69 16 51 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 52 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -73.87 416.15 -0.56 -74.43 By element: Atomic # 1 Polarization: 37.48 SS G_CDS: -0.53 Total: 36.95 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 5.80 Total: 11.39 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -7.76 Total: -116.00 kcal Atomic # 8 Polarization: -51.71 SS G_CDS: -0.09 Total: -51.81 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -73.87 -0.56 -74.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224599765.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.841 kcal (2) G-P(sol) polarization free energy of solvation -73.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds