Wall clock time and date at job start Tue Mar 31 2020 19:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47296 * 2 1 4 4 H 1.08993 * 109.99704 * 305.20560 * 3 2 1 5 5 C 1.54330 * 109.88225 * 66.29814 * 3 2 1 6 6 C 1.55148 * 103.10262 * 141.51909 * 5 3 2 7 7 C 1.55119 * 101.48897 * 324.71966 * 6 5 3 8 8 N 1.47021 * 109.88186 * 184.10617 * 3 2 1 9 9 C 1.34776 * 125.64824 * 61.68073 * 8 3 2 10 10 O 1.21344 * 119.99994 * 4.81544 * 9 8 3 11 11 C 1.49453 * 119.99717 * 184.81682 * 9 8 3 12 12 O 1.21353 * 120.00266 * 359.97438 * 11 9 8 13 13 N 1.34776 * 119.99717 * 179.97438 * 11 9 8 14 14 C 1.46504 * 120.00132 * 180.02562 * 13 11 9 15 15 C 1.52999 * 109.47173 * 180.02562 * 14 13 11 16 16 C 1.53041 * 109.45585 * 295.02486 * 15 14 13 17 17 C 1.53197 * 109.30657 * 178.60454 * 16 15 14 18 18 N 1.46927 * 108.76797 * 54.65777 * 17 16 15 19 19 C 1.36934 * 120.63225 * 126.39992 * 18 17 16 20 20 H 1.07992 * 120.00278 * 210.59045 * 19 18 17 21 21 C 1.38819 * 119.99719 * 30.60301 * 19 18 17 22 22 N 1.31612 * 120.00374 * 15.77574 * 21 19 18 23 23 Si 1.86801 * 119.99444 * 195.78219 * 21 19 18 24 24 H 1.48502 * 109.47178 * 59.99760 * 23 21 19 25 25 H 1.48506 * 109.46796 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47229 * 299.99292 * 23 21 19 27 27 C 1.46924 * 118.73508 * 306.38219 * 18 17 16 28 28 C 1.53043 * 109.45660 * 174.97252 * 15 14 13 29 29 H 1.09001 * 109.47073 * 183.35192 * 1 2 3 30 30 H 1.09005 * 109.46853 * 303.35165 * 1 2 3 31 31 H 1.08996 * 109.47001 * 63.35513 * 1 2 3 32 32 H 1.09001 * 109.47271 * 239.99829 * 2 1 3 33 33 H 1.09004 * 109.46971 * 120.00223 * 2 1 3 34 34 H 1.08994 * 110.71991 * 259.97751 * 5 3 2 35 35 H 1.09001 * 110.72022 * 23.06821 * 5 3 2 36 36 H 1.09005 * 111.00274 * 82.66063 * 6 5 3 37 37 H 1.08994 * 111.00697 * 206.50907 * 6 5 3 38 38 H 1.08995 * 110.20775 * 277.95655 * 7 6 5 39 39 H 1.09001 * 110.51376 * 155.75031 * 7 6 5 40 40 H 0.96998 * 119.99935 * 359.97438 * 13 11 9 41 41 H 1.09002 * 109.46422 * 300.00023 * 14 13 11 42 42 H 1.09000 * 109.46870 * 59.99069 * 14 13 11 43 43 H 1.08993 * 109.46202 * 54.99991 * 15 14 13 44 44 H 1.08999 * 109.49591 * 298.56250 * 16 15 14 45 45 H 1.08999 * 109.50086 * 58.66646 * 16 15 14 46 46 H 1.08997 * 109.60043 * 294.86405 * 17 16 15 47 47 H 1.09002 * 109.57944 * 174.43544 * 17 16 15 48 48 H 0.96993 * 120.00256 * 180.02562 * 22 21 19 49 49 H 1.08999 * 109.58407 * 293.82056 * 27 18 17 50 50 H 1.09003 * 109.58417 * 173.39859 * 27 18 17 51 51 H 1.09001 * 109.49510 * 301.33219 * 28 15 14 52 52 H 1.08999 * 109.49677 * 61.39987 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6076 1.9907 -0.8369 5 6 1.6650 2.1318 1.3289 6 6 2.9145 2.9967 1.6414 7 6 4.0573 2.0916 1.1111 8 7 3.5069 1.4541 -0.0990 9 6 4.2288 0.9640 -1.1262 10 8 3.6670 0.5386 -2.1141 11 6 5.7211 0.9444 -1.0484 12 8 6.2830 1.3702 -0.0607 13 7 6.4430 0.4538 -2.0754 14 6 7.9059 0.4340 -1.9991 15 6 8.4757 -0.1674 -3.2854 16 6 8.0552 -1.6351 -3.3918 17 6 8.5981 -2.2241 -4.6976 18 7 10.0505 -2.0077 -4.7460 19 6 10.9055 -3.0562 -4.9576 20 1 11.8964 -3.0401 -4.5286 21 6 10.4984 -4.1399 -5.7238 22 7 9.4371 -4.0387 -6.4955 23 14 11.4570 -5.7419 -5.6593 24 1 11.4551 -6.2643 -4.2692 25 1 10.8219 -6.7354 -6.5620 26 1 12.8558 -5.4996 -6.0952 27 6 10.5681 -0.6449 -4.5633 28 6 10.0030 -0.0734 -3.2592 29 1 -0.3633 -1.0259 0.0601 30 1 -0.3633 0.5650 0.8585 31 1 -0.3633 0.4609 -0.9185 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 0.7832 2.7596 1.2021 35 1 1.5012 1.3932 2.1136 36 1 2.8818 3.9411 1.0980 37 1 3.0132 3.1677 2.7133 38 1 4.3150 1.3366 1.8537 39 1 4.9330 2.6899 0.8597 40 1 5.9939 0.1131 -2.8648 41 1 8.2771 1.4518 -1.8787 42 1 8.2171 -0.1694 -1.1463 43 1 8.0926 0.3833 -4.1444 44 1 8.4591 -2.1914 -2.5459 45 1 6.9673 -1.7032 -3.3867 46 1 8.1264 -1.7286 -5.5462 47 1 8.3865 -3.2928 -4.7320 48 1 9.1525 -4.7959 -7.0306 49 1 10.2570 -0.0206 -5.4009 50 1 11.6565 -0.6716 -4.5092 51 1 10.3015 0.9702 -3.1597 52 1 10.3881 -0.6441 -2.4142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225102156.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:19 Heat of formation + Delta-G solvation = -60.656162 kcal Electronic energy + Delta-G solvation = -29873.160340 eV Core-core repulsion = 25872.597973 eV Total energy + Delta-G solvation = -4000.562367 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.01458 -39.32860 -37.90233 -37.70149 -35.11943 -33.80504 -32.91236 -31.90039 -30.68277 -29.86697 -28.26419 -27.35270 -25.50487 -24.11763 -23.16070 -22.39853 -22.15311 -21.12838 -20.84089 -19.74787 -19.06316 -17.84210 -17.27427 -16.72757 -16.49211 -15.80961 -15.46441 -15.02308 -14.84324 -14.65356 -14.31400 -14.02772 -13.85734 -13.79004 -13.52551 -13.45362 -13.39402 -13.05931 -12.72959 -12.47583 -12.42630 -12.35035 -12.00115 -11.89586 -11.85732 -11.58179 -11.38230 -11.32788 -11.10429 -10.97879 -10.82347 -10.71193 -10.55572 -10.23959 -10.23429 -9.92649 -9.67557 -9.52311 -9.41689 -9.18571 -8.98625 -8.46022 -6.62387 -5.77970 -3.22925 1.34721 2.14858 3.12563 3.36239 3.38969 3.44672 3.45883 4.10368 4.16127 4.39931 4.42247 4.50519 4.73960 4.82635 4.90714 5.01770 5.04084 5.12477 5.20087 5.29938 5.34417 5.35179 5.42501 5.48261 5.53610 5.56995 5.58268 5.71093 5.76005 5.79045 5.79989 5.86417 5.89879 5.99657 6.07879 6.13622 6.22820 6.33577 6.47872 6.57922 6.66789 6.75655 6.81852 6.93713 6.99163 7.19399 7.36802 7.61389 7.64872 7.80841 7.93712 8.48029 9.23001 9.85763 10.44111 11.30595 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019362 B = 0.002180 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.781468 B =12838.337069 C =13777.604620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C 0.136 3.864 4 H 0.081 0.919 5 C -0.128 4.128 6 C -0.137 4.137 7 C 0.101 3.899 8 N -0.591 5.591 9 C 0.521 3.479 10 O -0.517 6.517 11 C 0.505 3.495 12 O -0.524 6.524 13 N -0.690 5.690 14 C 0.122 3.878 15 C -0.092 4.092 16 C -0.137 4.137 17 C 0.173 3.827 18 N -0.592 5.592 19 C -0.255 4.255 20 H 0.063 0.937 21 C 0.004 3.996 22 N -0.902 5.902 23 Si 0.902 3.098 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.146 3.854 28 C -0.124 4.124 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.414 0.586 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.057 0.943 45 H 0.047 0.953 46 H 0.019 0.981 47 H 0.083 0.917 48 H 0.254 0.746 49 H 0.017 0.983 50 H 0.055 0.945 51 H 0.052 0.948 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.242 14.337 16.490 27.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C 0.033 3.967 4 H 0.099 0.901 5 C -0.166 4.166 6 C -0.175 4.175 7 C -0.022 4.022 8 N -0.326 5.326 9 C 0.304 3.696 10 O -0.392 6.392 11 C 0.286 3.714 12 O -0.401 6.401 13 N -0.343 5.343 14 C -0.001 4.001 15 C -0.111 4.111 16 C -0.176 4.176 17 C 0.047 3.953 18 N -0.315 5.315 19 C -0.385 4.385 20 H 0.081 0.919 21 C -0.195 4.195 22 N -0.546 5.546 23 Si 0.732 3.268 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.208 1.208 27 C 0.019 3.981 28 C -0.164 4.164 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.115 0.885 40 H 0.251 0.749 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.037 0.963 47 H 0.101 0.899 48 H 0.064 0.936 49 H 0.035 0.965 50 H 0.073 0.927 51 H 0.071 0.929 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.122 14.235 16.447 27.075 hybrid contribution 0.221 -1.069 -0.379 1.155 sum -15.901 13.167 16.068 26.161 Atomic orbital electron populations 1.21711 0.94792 1.02079 1.01910 1.21908 0.96494 0.95851 1.03321 1.21763 0.79213 0.97073 0.98650 0.90139 1.22746 0.98470 0.99180 0.96156 1.22902 0.94219 0.98399 1.02016 1.22616 0.97277 0.96222 0.86042 1.48342 1.07113 1.57673 1.19426 1.19936 0.88113 0.79056 0.82491 1.90773 1.72347 1.45908 1.30189 1.19951 0.87759 0.79725 0.84007 1.90713 1.72320 1.46084 1.30990 1.45919 1.08192 1.60580 1.19572 1.21737 0.77096 1.01328 0.99895 1.21335 0.96887 0.97587 0.95261 1.22279 0.98717 0.94267 1.02367 1.20721 0.83277 1.00739 0.90560 1.44018 1.02037 1.01811 1.83611 1.19112 0.97374 0.96640 1.25341 0.91896 1.25116 0.98333 0.99940 0.96088 1.70007 1.26965 1.30304 1.27333 0.86380 0.79463 0.83534 0.77427 1.21018 1.21642 1.20846 1.20889 0.97001 0.87317 0.92851 1.21987 0.93558 0.99633 1.01179 0.92342 0.92531 0.92483 0.90491 0.91690 0.89841 0.90162 0.90525 0.89494 0.90881 0.88473 0.74912 0.91322 0.91019 0.91045 0.92441 0.93443 0.96336 0.89882 0.93569 0.96486 0.92690 0.92891 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.80 37.16 0.36 -0.61 16 2 C -0.14 -1.21 5.39 -26.73 -0.14 -1.35 16 3 C 0.14 1.16 2.88 -66.95 -0.19 0.97 16 4 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 5 C -0.13 -0.71 5.50 -24.90 -0.14 -0.85 16 6 C -0.14 -0.79 7.11 -24.47 -0.17 -0.96 16 7 C 0.10 0.88 5.90 -2.41 -0.01 0.87 16 8 N -0.59 -6.35 3.07 -163.39 -0.50 -6.85 16 9 C 0.52 6.96 7.64 -11.58 -0.09 6.87 16 10 O -0.52 -7.92 15.65 5.50 0.09 -7.84 16 11 C 0.51 7.03 7.85 -11.58 -0.09 6.94 16 12 O -0.52 -7.82 13.90 5.49 0.08 -7.75 16 13 N -0.69 -9.39 5.27 -60.73 -0.32 -9.71 16 14 C 0.12 1.69 5.06 -4.04 -0.02 1.67 16 15 C -0.09 -1.44 2.19 -90.58 -0.20 -1.64 16 16 C -0.14 -2.52 5.25 -26.61 -0.14 -2.66 16 17 C 0.17 4.06 5.28 -3.71 -0.02 4.04 16 18 N -0.59 -14.70 2.98 -172.32 -0.51 -15.21 16 19 C -0.25 -6.99 9.56 -15.06 -0.14 -7.13 16 20 H 0.06 1.69 7.88 -52.49 -0.41 1.28 16 21 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 22 N -0.90 -26.28 11.31 55.49 0.63 -25.65 16 23 Si 0.90 21.76 29.58 -169.99 -5.03 16.73 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 C 0.15 3.00 6.52 -3.71 -0.02 2.97 16 28 C -0.12 -2.04 5.36 -26.61 -0.14 -2.18 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.29 7.35 -51.93 -0.38 -0.09 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.88 6.90 -51.93 -0.36 0.52 16 33 H 0.06 0.56 8.05 -51.93 -0.42 0.14 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.40 7.78 -51.93 -0.40 0.00 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 0.97 6.46 -51.93 -0.34 0.64 16 40 H 0.41 5.56 7.12 -40.82 -0.29 5.27 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.05 0.79 7.15 -51.93 -0.37 0.42 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.08 2.21 6.22 -51.93 -0.32 1.88 16 48 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 49 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 50 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 51 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 52 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 402.57 15.07 6.07 6.07 Total: -1.00 -31.33 402.57 -9.94 -41.27 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -9.18 Total: 1.97 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -1.25 Total: 6.97 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -0.71 Total: -57.42 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.16 Total: -15.59 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.33 -9.94 -41.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225102156.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.388 kcal (2) G-P(sol) polarization free energy of solvation -31.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds