Wall clock time and date at job start Tue Mar 31 2020 19:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47514 * 2 1 4 4 H 1.09000 * 115.54967 * 29.33191 * 3 2 1 5 5 C 1.53075 * 117.51327 * 243.60800 * 3 2 1 6 6 C 1.53003 * 117.49981 * 174.99885 * 3 2 1 7 7 H 1.09002 * 117.49720 * 359.97438 * 6 3 2 8 8 C 1.50703 * 117.49742 * 215.00392 * 6 3 2 9 9 O 1.21285 * 120.00148 * 0.08738 * 8 6 3 10 10 N 1.34774 * 119.99735 * 180.08430 * 8 6 3 11 11 C 1.46504 * 119.99618 * 179.97438 * 10 8 6 12 12 H 1.09001 * 109.46891 * 35.00590 * 11 10 8 13 13 C 1.52997 * 109.47417 * 275.00242 * 11 10 8 14 14 C 1.53002 * 109.46978 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.46891 * 60.00410 * 14 13 11 16 16 C 1.53000 * 109.47328 * 299.99597 * 15 14 13 17 17 C 1.52997 * 109.47060 * 60.00126 * 16 15 14 18 18 H 1.08998 * 109.47533 * 59.99948 * 17 16 15 19 19 N 1.46894 * 109.47515 * 180.02562 * 17 16 15 20 20 C 1.46899 * 111.00313 * 275.00230 * 19 17 16 21 21 C 1.50699 * 109.47386 * 179.97438 * 20 19 17 22 22 O 1.21291 * 119.99890 * 359.97438 * 21 20 19 23 23 N 1.34778 * 120.00215 * 180.02562 * 21 20 19 24 24 C 1.37093 * 120.00291 * 179.97438 * 23 21 20 25 25 H 1.08002 * 119.99982 * 359.97438 * 24 23 21 26 26 C 1.38947 * 120.00170 * 179.97438 * 24 23 21 27 27 N 1.31415 * 120.00092 * 359.97438 * 26 24 23 28 28 Si 1.86802 * 120.00086 * 179.97438 * 26 24 23 29 29 H 1.48503 * 109.46933 * 60.00219 * 28 26 24 30 30 H 1.48497 * 109.47101 * 179.97438 * 28 26 24 31 31 H 1.48498 * 109.47193 * 300.00385 * 28 26 24 32 32 H 1.08994 * 109.47454 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46960 * 300.00404 * 1 2 3 34 34 H 1.09005 * 109.46624 * 60.00231 * 1 2 3 35 35 H 1.09006 * 109.47462 * 239.99626 * 2 1 3 36 36 H 1.08999 * 109.46918 * 120.00084 * 2 1 3 37 37 H 1.09000 * 117.51173 * 145.04792 * 5 3 2 38 38 H 1.08992 * 117.49608 * 0.02562 * 5 3 2 39 39 H 0.96997 * 120.00234 * 0.02562 * 10 8 6 40 40 H 1.09002 * 109.47045 * 60.00127 * 13 11 10 41 41 H 1.09001 * 109.47375 * 300.00052 * 13 11 10 42 42 H 1.08992 * 109.47056 * 300.00064 * 14 13 11 43 43 H 1.09004 * 109.47006 * 180.02562 * 14 13 11 44 44 H 1.09004 * 109.47368 * 179.97438 * 15 14 13 45 45 H 1.09001 * 109.47372 * 59.99964 * 15 14 13 46 46 H 1.09002 * 109.47398 * 180.02562 * 16 15 14 47 47 H 1.09001 * 109.47194 * 300.00476 * 16 15 14 48 48 H 1.00902 * 111.00328 * 151.04219 * 19 17 16 49 49 H 1.09003 * 109.46741 * 300.00007 * 20 19 17 50 50 H 1.09003 * 109.47153 * 59.99606 * 20 19 17 51 51 H 0.97001 * 119.99616 * 359.97438 * 23 21 20 52 52 H 0.96996 * 120.00008 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3885 2.1715 0.4817 5 6 2.8448 1.9079 -1.2161 6 6 3.5502 1.6578 0.1183 7 1 4.1803 0.7718 0.1966 8 6 4.0229 2.8616 0.8919 9 8 3.2159 3.6152 1.3937 10 7 5.3425 3.1006 1.0263 11 6 5.8020 4.2712 1.7779 12 1 5.1245 4.4567 2.6113 13 6 5.8237 5.4926 0.8566 14 6 6.3030 6.7151 1.6418 15 6 7.7121 6.4561 2.1786 16 6 7.6905 5.2348 3.0999 17 6 7.2112 4.0122 2.3148 18 1 7.8889 3.8268 1.4815 19 7 7.1898 2.8397 3.1993 20 6 8.5121 2.2028 3.2614 21 6 8.4513 1.0070 4.1766 22 8 7.4091 0.7144 4.7237 23 7 9.5553 0.2633 4.3879 24 6 9.5001 -0.8242 5.2208 25 1 8.5721 -1.0848 5.7080 26 6 10.6381 -1.5912 5.4383 27 7 11.7672 -1.2745 4.8451 28 14 10.5631 -3.0726 6.5738 29 1 9.5690 -4.0453 6.0534 30 1 11.8996 -3.7168 6.6358 31 1 10.1609 -2.6337 7.9342 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8901 35 1 1.8934 -0.5139 -0.8900 36 1 1.8932 -0.5138 0.8900 37 1 2.7226 2.9432 -1.5344 38 1 3.0102 1.1865 -2.0162 39 1 5.9879 2.4981 0.6247 40 1 4.8197 5.6773 0.4745 41 1 6.5013 5.3071 0.0232 42 1 5.6252 6.9005 2.4750 43 1 6.3180 7.5854 0.9856 44 1 8.0538 7.3273 2.7377 45 1 8.3900 6.2708 1.3454 46 1 8.6943 5.0505 3.4827 47 1 7.0126 5.4201 3.9331 48 1 6.4840 2.1799 2.9083 49 1 8.8079 1.8818 2.2626 50 1 9.2415 2.9164 3.6446 51 1 10.3888 0.4976 3.9507 52 1 12.5617 -1.8097 4.9972 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228674809.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:22 Heat of formation + Delta-G solvation = -97.401385 kcal Electronic energy + Delta-G solvation = -29622.110744 eV Core-core repulsion = 25619.954985 eV Total energy + Delta-G solvation = -4002.155759 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.47618 -40.28731 -39.58003 -37.88788 -36.18804 -35.50488 -35.19918 -33.26998 -32.95476 -30.94265 -30.35275 -27.79535 -25.86377 -25.60397 -24.62559 -23.17564 -22.51410 -21.55662 -21.30084 -21.06198 -20.58459 -19.90697 -18.51497 -17.86162 -17.32844 -16.82786 -16.41902 -16.31186 -16.05476 -15.92048 -15.55033 -15.48280 -15.22214 -15.13669 -15.04936 -14.78128 -14.22504 -13.98602 -13.65043 -13.51265 -13.46957 -13.43296 -13.21097 -13.10962 -12.99516 -12.88551 -12.44198 -12.34696 -12.22044 -12.14634 -12.13084 -11.94996 -11.73918 -11.55107 -11.51349 -11.28259 -11.21575 -11.04210 -10.73569 -10.36807 -10.11599 -10.02360 -9.36529 -8.47373 -5.96026 1.38974 1.41290 1.44582 1.51881 2.04093 2.06301 2.28238 2.80865 2.84731 3.19927 3.44079 3.51764 3.62327 3.74615 3.83788 3.96345 4.02663 4.16938 4.18073 4.24580 4.26196 4.30815 4.36548 4.45616 4.46519 4.47160 4.51385 4.55476 4.59704 4.75158 4.84503 4.89681 4.91274 4.97402 5.00730 5.13891 5.17760 5.18863 5.20651 5.26528 5.27173 5.34048 5.40090 5.43909 5.47729 5.53679 5.89171 6.10154 6.33041 6.45715 6.59692 7.12094 7.18431 7.55460 8.11356 8.69697 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007997 B = 0.002958 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3500.357949 B = 9464.454786 C =12458.062247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.125 4.125 4 H 0.094 0.906 5 C -0.125 4.125 6 C -0.203 4.203 7 H 0.138 0.862 8 C 0.542 3.458 9 O -0.582 6.582 10 N -0.716 5.716 11 C 0.149 3.851 12 H 0.062 0.938 13 C -0.115 4.115 14 C -0.115 4.115 15 C -0.112 4.112 16 C -0.107 4.107 17 C 0.089 3.911 18 H 0.070 0.930 19 N -0.683 5.683 20 C 0.066 3.934 21 C 0.436 3.564 22 O -0.625 6.625 23 N -0.571 5.571 24 C -0.335 4.335 25 H 0.077 0.923 26 C -0.010 4.010 27 N -0.919 5.919 28 Si 0.990 3.010 29 H -0.271 1.271 30 H -0.269 1.269 31 H -0.274 1.274 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.130 0.870 39 H 0.410 0.590 40 H 0.053 0.947 41 H 0.082 0.918 42 H 0.053 0.947 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.068 0.932 47 H 0.053 0.947 48 H 0.342 0.658 49 H 0.073 0.927 50 H 0.104 0.896 51 H 0.397 0.603 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.332 10.940 -17.092 22.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 C -0.144 4.144 4 H 0.112 0.888 5 C -0.162 4.162 6 C -0.224 4.224 7 H 0.155 0.845 8 C 0.330 3.670 9 O -0.462 6.462 10 N -0.366 5.366 11 C 0.044 3.956 12 H 0.080 0.920 13 C -0.155 4.155 14 C -0.153 4.153 15 C -0.150 4.150 16 C -0.146 4.146 17 C -0.020 4.020 18 H 0.088 0.912 19 N -0.316 5.316 20 C -0.066 4.066 21 C 0.224 3.776 22 O -0.512 6.512 23 N -0.208 5.208 24 C -0.465 4.465 25 H 0.095 0.905 26 C -0.210 4.210 27 N -0.560 5.560 28 Si 0.814 3.186 29 H -0.196 1.196 30 H -0.194 1.194 31 H -0.199 1.199 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.149 0.851 39 H 0.246 0.754 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.086 0.914 47 H 0.072 0.928 48 H 0.162 0.838 49 H 0.090 0.910 50 H 0.122 0.878 51 H 0.231 0.769 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.283 11.546 -15.787 22.580 hybrid contribution 0.791 -1.362 -0.088 1.578 sum -10.492 10.184 -15.875 21.583 Atomic orbital electron populations 1.21731 0.94720 1.02231 1.01900 1.21169 0.96705 0.92562 1.02671 1.22470 0.90730 0.99233 1.01936 0.88781 1.23192 0.99655 1.03489 0.89875 1.22373 0.98486 0.98341 1.03218 0.84463 1.20132 0.82158 0.85599 0.79086 1.90665 1.54950 1.50547 1.50073 1.45976 1.07045 1.28474 1.55130 1.21093 0.94725 0.85763 0.94047 0.91954 1.21809 1.01545 0.93763 0.98335 1.21505 0.96751 0.97279 0.99750 1.21535 0.96888 0.97227 0.99341 1.21544 1.01428 0.93345 0.98263 1.21853 0.95024 0.91341 0.93821 0.91242 1.60057 1.05335 1.10605 1.55609 1.21598 0.93079 0.93906 0.97994 1.20899 0.83864 0.86497 0.86349 1.90507 1.31959 1.73649 1.55083 1.41902 1.11005 1.25640 1.42261 1.19605 0.97478 1.05367 1.24025 0.90543 1.25997 0.94112 1.01641 0.99275 1.69656 1.00987 1.41379 1.43930 0.85028 0.77798 0.77555 0.78208 1.19642 1.19350 1.19931 0.91629 0.93557 0.91898 0.89881 0.92252 0.88714 0.85147 0.75432 0.92799 0.89982 0.92856 0.89866 0.90474 0.90454 0.91380 0.92795 0.83783 0.90958 0.87769 0.76891 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.87 71.98 0.71 -1.44 16 2 C -0.09 -1.49 6.22 30.59 0.19 -1.30 16 3 C -0.12 -2.41 5.25 -10.77 -0.06 -2.47 16 4 H 0.09 2.27 7.60 -2.39 -0.02 2.25 16 5 C -0.12 -1.86 9.88 30.62 0.30 -1.56 16 6 C -0.20 -4.02 5.91 -11.54 -0.07 -4.09 16 7 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 8 C 0.54 14.15 7.58 87.66 0.66 14.82 16 9 O -0.58 -19.96 15.92 -3.05 -0.05 -20.01 16 10 N -0.72 -15.80 4.14 -442.51 -1.83 -17.63 16 11 C 0.15 3.48 2.02 44.99 0.09 3.57 16 12 H 0.06 1.93 7.58 -2.39 -0.02 1.91 16 13 C -0.12 -2.15 5.49 30.59 0.17 -1.98 16 14 C -0.11 -1.87 5.92 30.59 0.18 -1.69 16 15 C -0.11 -1.73 5.92 30.59 0.18 -1.55 16 16 C -0.11 -2.30 5.42 30.59 0.17 -2.14 16 17 C 0.09 2.04 2.05 44.92 0.09 2.13 16 18 H 0.07 1.31 7.80 -2.39 -0.02 1.29 16 19 N -0.68 -21.58 5.93 -495.58 -2.94 -24.52 16 20 C 0.07 2.20 5.97 85.56 0.51 2.71 16 21 C 0.44 20.64 7.82 87.66 0.69 21.32 16 22 O -0.63 -35.13 15.78 -3.06 -0.05 -35.18 16 23 N -0.57 -28.98 5.29 -306.99 -1.62 -30.60 16 24 C -0.34 -19.01 9.68 84.04 0.81 -18.20 16 25 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 26 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 27 N -0.92 -49.01 13.05 21.66 0.28 -48.73 16 28 Si 0.99 42.78 29.55 68.60 2.03 44.81 16 29 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 30 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 31 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.08 1.02 7.88 -2.38 -0.02 1.00 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.13 1.27 8.03 -2.39 -0.02 1.25 16 39 H 0.41 7.20 8.60 -92.71 -0.80 6.40 16 40 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 44 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.07 1.48 7.46 -2.39 -0.02 1.46 16 47 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.34 11.73 7.26 -89.69 -0.65 11.08 16 49 H 0.07 1.98 8.06 -2.39 -0.02 1.96 16 50 H 0.10 3.13 7.44 -2.39 -0.02 3.11 16 51 H 0.40 18.97 7.90 -92.71 -0.73 18.23 16 52 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -72.93 418.39 -0.33 -73.26 By element: Atomic # 1 Polarization: 51.79 SS G_CDS: -1.25 Total: 50.54 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 5.10 Total: 8.06 kcal Atomic # 7 Polarization: -115.38 SS G_CDS: -6.11 Total: -121.49 kcal Atomic # 8 Polarization: -55.09 SS G_CDS: -0.10 Total: -55.19 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -72.93 -0.33 -73.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228674809.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.139 kcal (2) G-P(sol) polarization free energy of solvation -72.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds